View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0130Ase21 (Length: 413)
Name: NF0130Ase21
Description: NF0130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0130Ase21 |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 9 - 407
Target Start/End: Complemental strand, 55233703 - 55233315
Alignment:
| Q |
9 |
gtacttcangcgatttcnagttaaattcaagagangaagagagggtaagactgattaccgagccaggnngagtttgattactcaagacgctaacaannan |
108 |
Q |
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| T |
55233703 |
gtacttcaagcgatttcaagttaaattcaagagaagaagagagggtaagactgattaccgagccagggtgagtttgattactcaagacgctaacaaatac |
55233604 |
T |
|
| Q |
109 |
ggcactcccaaataccgttacgttgttcgatnggtaagnaaccatcctcttctcttgcatagcattgctacttaattttcaatcccttaccattattatt |
208 |
Q |
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| T |
55233603 |
ggcactcccaaataccgttacgttgttcgattggtaagtaaccatcctcttctcttgcatagcattgctacttaatttt--at---ttat-----ttatt |
55233514 |
T |
|
| Q |
209 |
tatttattacttttagacaaacaaagacattgtctgtcaaattgtctctgctaccattgctggtgatattgttcttgctgnngcttacgcacatgagctt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
55233513 |
tatttattacttttagacaaacaaagacattgtctgtcaaattgtctctgctaccattgctggtgatattgttcttgctgctgcttacgcacatgagctt |
55233414 |
T |
|
| Q |
309 |
cctcaatttggcctccntgtaggccttactaactatgctgcaggcactttacttctattttctctatattgttatgcctctttttaatccatgtaatta |
407 |
Q |
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| T |
55233413 |
cctcaatttggcctccacgtaggccttactaactatgctgcaggtactttacttctattttctctatattgttatgcctctttttaatccatgtaatta |
55233315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 352
Target Start/End: Complemental strand, 10464781 - 10464675
Alignment:
| Q |
246 |
caaattgtctctgctaccattgctggtgatattgttcttgctgnngcttacgcacatgagcttcctcaatttggcctccntgtaggccttactaactatg |
345 |
Q |
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| T |
10464781 |
caaatagtgtctgctagtattgctggtgatattgttcttgctgctgcatattctcatgagctgccacactttggtctgaaagtaggccttacaaattatg |
10464682 |
T |
|
| Q |
346 |
ctgcagg |
352 |
Q |
| |
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||||||| |
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| T |
10464681 |
ctgcagg |
10464675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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