View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0130Ase23 (Length: 807)
Name: NF0130Ase23
Description: NF0130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0130Ase23 |
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Alignment Details
Target: chr3 (Bit Score: 467; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 7 - 558
Target Start/End: Complemental strand, 41677419 - 41676869
Alignment:
| Q |
7 |
taatcatanggattctcttatcattctctacaaaaatcactctcaaataaggtaaaaaatttctatncctttccctctgttactctccctcccctccaaa |
106 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
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| T |
41677419 |
taatcataaggattctcttatcattctctacaaaaatcactctcaaataaggtaaaagatttctatacctttccctctgttactctccctcccctccaaa |
41677320 |
T |
|
| Q |
107 |
ctcccaaacggagcctaacaggacggtccttggttatttgttgtttgcataaatttcagaatgaaagcaatataaatgcngtgattaacgggtgttgata |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
41677319 |
ctcccaaacggagcctaacaggacggtccttggttatttgttgtttgcataaatttcaaaatgaaagcaatataaatgcagtgattaacgggtgttgata |
41677220 |
T |
|
| Q |
207 |
tgcntgttctgtaacaggtgtttcagggcctataatctaatttatagaatgtggctggataattgncaatgagaggctaccaagctgaaggngtgttggt |
306 |
Q |
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||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
41677219 |
tgcatgttctataacaggtgtttcagggcctataatctaatttatagaatgtggctggataattgtcaatgagaggctaccaagctgaaggtgtgttggt |
41677120 |
T |
|
| Q |
307 |
gnnnnnnngcatatanctganctaacagagacccttgttctgtatttgaagttcgaaagctcatttgagaaagagtgaagatcaaagtatgctgttatag |
406 |
Q |
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| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41677119 |
gaaaaaaagcatataactgaactaacagagacccttgttctgtatttgaagttcgaaagctcatttgagaaagagtgaagatcaaagtatgctgttatag |
41677020 |
T |
|
| Q |
407 |
atgctattcngagcaacaccaccnaaaaaactaaataattaaacatatggcattaccttacctggtgtgcnatattgtgaatcactaatatactacgtgc |
506 |
Q |
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||||||||| ||||||||||||| |||||||||||||| ||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
41677019 |
atgctattccgagcaacaccaccaaaaaaactaaataaataaacatatgg-attaacttacctggtgtgcaatattgtgaatcactaatatactacgtgc |
41676921 |
T |
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| Q |
507 |
atccttatataccccatatggacnatactttgatgccaaaagtctgcaatac |
558 |
Q |
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| T |
41676920 |
atccttatataccccatatggacgatactttgatgccaaaagtctgcaatac |
41676869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 588 - 676
Target Start/End: Complemental strand, 41676855 - 41676764
Alignment:
| Q |
588 |
acaantcncaagaagctttaa-taaaacttaaaatgtgnaaccctacntnccccg-ngaagcatagtaaaaaggt-nttggaantaagaaaa |
676 |
Q |
| |
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|||| || ||||||||||||| |||||||||||||||| || ||||| | || || ||||||||||||||| || |||||| |||||||| |
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| T |
41676855 |
acaaatcacaagaagctttaaataaaacttaaaatgtgaaaacctacataccacgaggaagcatagtaaaaaagtatttggaaataagaaaa |
41676764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 9e-23; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 386 - 537
Target Start/End: Complemental strand, 19250818 - 19250665
Alignment:
| Q |
386 |
gatcaaagtatgctgttatagatgctatt-cngagcaacaccaccnaaaaaac--taaataattaaacatatggcattaccttacctggtgtgcnatatt |
482 |
Q |
| |
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||||||||||| | ||||||||||||||| | ||||||||| || |||||| ||||||| |||| | ||| |||| || ||||| ||||| ||||| |
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| T |
19250818 |
gatcaaagtatacagttatagatgctattgcctagcaacaccccccaaaaaaaattaaataaataaaaacatga-attaactcacctgatgtgcaatatt |
19250720 |
T |
|
| Q |
483 |
gtgaatcactaatatactacgtgcatccttatataccccatatggacnatacttt |
537 |
Q |
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||||||||||||||||||||| |||||||||||| || ||||||||| ||||||| |
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| T |
19250719 |
gtgaatcactaatatactacgcgcatccttatatgcctcatatggacgatacttt |
19250665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 386 - 537
Target Start/End: Complemental strand, 19324002 - 19323849
Alignment:
| Q |
386 |
gatcaaagtatgctgttatagatgctatt-cngagcaacaccaccnaaaaaac--taaataattaaacatatggcattaccttacctggtgtgcnatatt |
482 |
Q |
| |
|
||||||||||| | ||||||||||||||| | ||||||||| || |||||| ||||||| |||| | ||| |||| || ||||| ||||| ||||| |
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| T |
19324002 |
gatcaaagtatacagttatagatgctattgcctagcaacaccccccaaaaaaaattaaataaataaaaacatga-attaactcacctgatgtgcaatatt |
19323904 |
T |
|
| Q |
483 |
gtgaatcactaatatactacgtgcatccttatataccccatatggacnatacttt |
537 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| || ||||||||| ||||||| |
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| T |
19323903 |
gtgaatcactaatatactacgcgcatccttatatgcctcatatggacgatacttt |
19323849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 466 - 533
Target Start/End: Complemental strand, 3752008 - 3751941
Alignment:
| Q |
466 |
acctggtgtgcnatattgtgaatcactaatatactacgtgcatccttatataccccatatggacnata |
533 |
Q |
| |
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|||| |||||| |||||||||||||||||||||||||| |||||||||||| || ||||||||| ||| |
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| T |
3752008 |
acctcgtgtgcaatattgtgaatcactaatatactacgcgcatccttatatgcctcatatggacgata |
3751941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 3e-22; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 388 - 537
Target Start/End: Complemental strand, 34324078 - 34323929
Alignment:
| Q |
388 |
tcaaagtatgctgttatagatgctatt-cngagcaacaccaccnaaaaaactaaataattaaacatatggcattaccttacctggtgtgcnatattgtga |
486 |
Q |
| |
|
||||||||| | ||||||||||||||| | ||||||| | | |||||| ||||||| |||| | ||| |||| || |||||||| || ||||||||| |
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| T |
34324078 |
tcaaagtatacagttatagatgctattgcctagcaacaacccaaaaaaaattaaataaataaaaacatga-attaactcacctggtgggcaatattgtga |
34323980 |
T |
|
| Q |
487 |
atcactaatatactacgtgcatccttatataccccatatggacnatacttt |
537 |
Q |
| |
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||||||||||||||||| |||||||||||| || ||||||||| ||||||| |
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| T |
34323979 |
atcactaatatactacgcgcatccttatatgcctcatatggacgatacttt |
34323929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 386 - 516
Target Start/End: Complemental strand, 23810254 - 23810124
Alignment:
| Q |
386 |
gatcaaagtatgctgttatagatgctatt-cngagcaacaccaccnaaaaaactaaataattaaacatatggcattaccttacctggtgtgcnatattgt |
484 |
Q |
| |
|
||||||||||| | |||||||||||||| | ||||||||| | |||||| ||||||| |||| | ||| |||| || ||||||||||| ||||||| |
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| T |
23810254 |
gatcaaagtatacaattatagatgctattgcctagcaacaccccaaaaaaaattaaataaataaaaacatga-attaactcacctggtgtgcaatattgt |
23810156 |
T |
|
| Q |
485 |
gaatcactaatatactacgtgcatccttatat |
516 |
Q |
| |
|
|||||| |||||||||||| |||||||||||| |
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|
| T |
23810155 |
gaatcattaatatactacgcgcatccttatat |
23810124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 466 - 516
Target Start/End: Original strand, 22978229 - 22978279
Alignment:
| Q |
466 |
acctggtgtgcnatattgtgaatcactaatatactacgtgcatccttatat |
516 |
Q |
| |
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||||||||||| ||||||||||||| |||||||||||| |||||||||||| |
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|
| T |
22978229 |
acctggtgtgcaatattgtgaatcattaatatactacgcgcatccttatat |
22978279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 466 - 516
Target Start/End: Original strand, 2627557 - 2627606
Alignment:
| Q |
466 |
acctggtgtgcnatattgtgaatcactaatatactacgtgcatccttatat |
516 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
2627557 |
acctggtgtgcaatattgtgaatcactaatatac-acgcacatccttatat |
2627606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 472 - 537
Target Start/End: Complemental strand, 42920792 - 42920727
Alignment:
| Q |
472 |
tgtgcnatattgtgaatcactaatatactacgtgcatccttatataccccatatggacnatacttt |
537 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||| ||| || ||||||||| ||||||| |
|
|
| T |
42920792 |
tgtgcaatattgtgaatcactaatatactacgcgcatccttttatgcctcatatggacaatacttt |
42920727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 468 - 537
Target Start/End: Original strand, 47389956 - 47390029
Alignment:
| Q |
468 |
ctggtgtgcnatattgtgaatcactaatata----ctacgtgcatccttatataccccatatggacnatacttt |
537 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||| |||||||||||| || ||||||||| ||||||| |
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|
| T |
47389956 |
ctggtgtgcaatattgtgaatcactaatatatatactacgcgcatccttatatgcctcatatggacgatacttt |
47390029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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