View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0130Ase25 (Length: 532)
Name: NF0130Ase25
Description: NF0130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0130Ase25 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 423; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 8 - 526
Target Start/End: Original strand, 41127772 - 41128290
Alignment:
| Q |
8 |
tctttttggtgacatgcattgtcaccatcttcattggttcattgcatgcaagaagcagaaaatcaaactacaagcttccacctggcccttcctttttcac |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
41127772 |
tctttttggtgacatgcattgtcaccatcttcattgattcattgcatgcaag---cagaaaatcaaactacaagcttccacctggaccttcctttttcac |
41127868 |
T |
|
| Q |
108 |
tatcatgtcaaatgtngttgaattgtacaacaagccacaannnacacttgcaaaacttgctaagttctatggtcctattatgcgcattannn---gcaca |
204 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||| ||||||||| || |||||||||| |||||||||||||||||||||| ||||| |
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| T |
41127869 |
tatcatgtcaaatgttgttgaattgtacaacaagccacaacaaacacttgcagaatttgctaagttatatggtcctattatgcgcattaagctatgcaca |
41127968 |
T |
|
| Q |
205 |
gannctaccataatcatctcatcatcacatatggccaaagagattctttttacaaatgattcattgttcactgatagatctgttcctganaacacaacna |
304 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
41127969 |
gaaactaccataatcatctcatcatcacatatggccaaagagattctttttacaaatgattcattgttcactgatagatctgttcctgataacacaacaa |
41128068 |
T |
|
| Q |
305 |
ctcncaatcacaacaattttagcttagttttcctcccattttcacctctttggcaacatcttaggaaaatatgtcataataatttattctctaccaagac |
404 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
41128069 |
ctcataatcacaacaattttagcttagttttcctcccattttcacctctttggcaacatcttaggaaaatatgtcataataatttattttctaccaagac |
41128168 |
T |
|
| Q |
405 |
tcttgatggaagtcaagagcttagacgtatgaaattaaaagatcttctaaatgatatgcataaaagcagcataactggtgaagctgttgatgttggaaga |
504 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41128169 |
tcttgatggaagtcaagatcttagacgtatgaaattaaaagatcttctaaatgatatgcataaaagcagcataactggtgaagctgttgatgttggaaga |
41128268 |
T |
|
| Q |
505 |
gctgctttcanggcttgcatta |
526 |
Q |
| |
|
|||||||||| ||||||||||| |
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|
| T |
41128269 |
gctgctttcaaggcttgcatta |
41128290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 8 - 526
Target Start/End: Complemental strand, 41144912 - 41144391
Alignment:
| Q |
8 |
tctttttggtgacatgcattgtcaccatcttcattggttcattgcatgcaagaagcagaaaatcaaactacaagcttccacctggcccttcctttttcac |
107 |
Q |
| |
|
|||||||| |||||||||||||||| ||| |||||||||| | || ||||||| |||| | |||||||||||||||||||| |||||||||||||| |
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| T |
41144912 |
tctttttgttgacatgcattgtcacatacttttttggttcatttcttggcagaagcaaaaaacctaactacaagcttccacctggaccttcctttttcac |
41144813 |
T |
|
| Q |
108 |
tatcatgtcaaatgtngttgaattgtacaacaagccacaannnacacttgcaaaacttgctaagttctatggtcctattatgcgcattannn---gcaca |
204 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| ||||||||| || |||||||||| |||||||||||||||||||||| ||||| |
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|
| T |
41144812 |
tatcatgtcaaatgttgttgaattgtacaacaagccacaacaaacacttgcagaatttgctaagttatatggtcctattatgcgcattaagttatgcaca |
41144713 |
T |
|
| Q |
205 |
gannctaccataatcatctcatcatcacatatggccaaagagattctttttacaaatgattcattgttcactgatagatctgttcctganaacacaacna |
304 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
41144712 |
gaaactaccataatcatctcatcatcacatatggccaaagagattctttttacaaatgattcattgttcactgatagatctgttcctgataacacaacaa |
41144613 |
T |
|
| Q |
305 |
ctcncaatcacaacaattttagcttagttttcctcccattttcacctctttggcaacatcttaggaaaatatgtcataataatttattctctaccaagac |
404 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
41144612 |
ctcaaaatcacaacaattttagcttagttttcctcccattttcacctctttggcaacatcttaggaaaatatgtcataataatttattatctaccaagac |
41144513 |
T |
|
| Q |
405 |
tcttgatggaagtcaagagcttagacgtatgaaattaaaagatcttctaaatgatatgcataaaagcagcataactggtgaagctgttgatgttggaaga |
504 |
Q |
| |
|
|||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41144512 |
tcttgatggaagtcaagaacttagacgaaagaaattaaaagatcttctaaatgatatgcataaaagcagcataactggtgaagctgttgatgttggaaga |
41144413 |
T |
|
| Q |
505 |
gctgctttcanggcttgcatta |
526 |
Q |
| |
|
|||||||||| ||||||||||| |
|
|
| T |
41144412 |
gctgctttcaaggcttgcatta |
41144391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 8 - 526
Target Start/End: Complemental strand, 41120496 - 41119975
Alignment:
| Q |
8 |
tctttttggtgacatgcattgtcaccatcttcattggttcattgcatgcaagaagcagaaaatcaaactacaagcttccacctggcccttcctttttcac |
107 |
Q |
| |
|
|||||||| |||||||||||||||| ||| |||||||| | ||||||| || |||||||||||| | || ||||||||| || ||||||||||||| |
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| T |
41120496 |
tctttttgctgacatgcattgtcacgtacttttttggttcactacatgcaaaaatcagaaaatcaaattgcatgcttccaccagggccttcctttttcat |
41120397 |
T |
|
| Q |
108 |
tatcatgtcaaatgtngttgaattgtacaacaagccacaannnacacttgcaaaacttgctaagttctatggtcctattatgcgcattannn---gcaca |
204 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||||| |||||||||||| |||||| ||| ||||||||| ||||| | |||| | ||| |
|
|
| T |
41120396 |
tatcatgtcacatgttgttgaattgtacaacaagccacaacaaacacttgcaaaatttgctaggttttatggtcctgttatgagtattaaattatggaca |
41120297 |
T |
|
| Q |
205 |
gannctaccataatcatctcatcatcacatatggccaaagagattctttttacaaatgattcattgttcactgatagatctgttcctganaacacaacna |
304 |
Q |
| |
|
|| |||| ||||| ||||| |||||| |||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||| |||||||| | |
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|
| T |
41120296 |
gaaactacaataataatctcttcatcagatatggccaaagagattcttcatactcatgattcattgttcattgatagatctgttcctgataacacaacaa |
41120197 |
T |
|
| Q |
305 |
ctcncaatcacaacaattttagcttagttttcctcccattttcacctctttggcaacatcttaggaaaatatgtcataataatttattctctaccaagac |
404 |
Q |
| |
|
||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| |||||||| ||||| |||||||||| | |||||| |
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|
| T |
41120196 |
ctcataatcacaacaattttagcttagtcttcctcccattttcacctctctggcaacaccttagaaaaatatgccataaccatttattctccaacaagac |
41120097 |
T |
|
| Q |
405 |
tcttgatggaagtcaagagcttagacgtatgaaattaaaagatcttctaaatgatatgcataaaagcagcataactggtgaagctgttgatgttggaaga |
504 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||| |||| ||||||||||||||| |||||||| |
|
|
| T |
41120096 |
tcttgatgcaagtcaagaacttagacgtatgaaattaaaagactttctcaatgatatgcataaaagcagcttaaccggtgaagctgttgatattggaaga |
41119997 |
T |
|
| Q |
505 |
gctgctttcanggcttgcatta |
526 |
Q |
| |
|
|||||||||| ||||||||||| |
|
|
| T |
41119996 |
gctgctttcaaggcttgcatta |
41119975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 79 - 492
Target Start/End: Original strand, 41033772 - 41034195
Alignment:
| Q |
79 |
aagcttccacctggcccttcctttttcactatcatgtcaaatgtngttgaattgtacaacaag-ccacaannnacacttgcaaaacttgctaagttctat |
177 |
Q |
| |
|
||||||||||| || |||||| |||| |||||||||||| | || ||||||| ||||| || ||||| || || |||||| ||||||| |||||| |
|
|
| T |
41033772 |
aagcttccaccaggaccttccatttttactatcatgtcacacgtttttgaattatacaaaaaaaccacatcaaaccctagcaaaatttgctaaattctat |
41033871 |
T |
|
| Q |
178 |
ggtcctattatgcgcattannn-------gcacagannctaccataatcatctcatcatcacatatggccaaagagattctttttacaaatgattcattg |
270 |
Q |
| |
|
|||||||||||| | |||| |||| || |||||||||| ||||| |||||| ||||||| |||||||||||| ||| ||||||||||| |
|
|
| T |
41033872 |
ggtcctattatgagtattaagttatgcatgcaccgagactaccataatgatctcttcatcagatatggctaaagagattcttaatactcatgattcattg |
41033971 |
T |
|
| Q |
271 |
ttcactgatagatctgttcctganaacacaacnactcncaatcacaacaattttagcttagttttcctcccattttcacctctttggcaacatcttagga |
370 |
Q |
| |
|
| | ||| |||||||||||||| | |||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||| | |
|
|
| T |
41033972 |
tgctgtgacagatctgttcctgatatcacaacaactcatgatcacaacaattttagcatagttttcctcccattttcacctcttttgcaacaccttagaa |
41034071 |
T |
|
| Q |
371 |
aaatatgtcataataatttattctctaccaagactcttgatggaagtcaagagcttagacgtatgaaattaaaagatcttctaaat--gatatgcataaa |
468 |
Q |
| |
|
||| || ||| || || ||||||| | ||||| |||||||| ||||||||| ||||||||||||||||| ||||||||||| ||| |||||||||||| |
|
|
| T |
41034072 |
aaacgtgccattatcatctattctcaaacaagaatcttgatgcaagtcaagaacttagacgtatgaaattgaaagatcttctcaatgagatatgcataaa |
41034171 |
T |
|
| Q |
469 |
agcagcataactggtgaagctgtt |
492 |
Q |
| |
|
|| || |||||||| |||||||| |
|
|
| T |
41034172 |
agtagtttaactggtaaagctgtt |
41034195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 466 - 512
Target Start/End: Original strand, 31129974 - 31130020
Alignment:
| Q |
466 |
aaaagcagcataactggtgaagctgttgatgttggaagagctgcttt |
512 |
Q |
| |
|
||||||||| ||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
31129974 |
aaaagcagcttaattggtgaagctgttgatgtaggaagagctgcttt |
31130020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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