View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0130Ase27 (Length: 901)

Name: NF0130Ase27
Description: NF0130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0130Ase27
NF0130Ase27
[»] chr4 (3 HSPs)
chr4 (9-643)||(42308730-42309368)
chr4 (385-446)||(51252696-51252757)
chr4 (391-446)||(54470199-54470254)
[»] chr3 (4 HSPs)
chr3 (9-130)||(51569394-51569515)
chr3 (385-446)||(36820196-36820257)
chr3 (394-446)||(42510249-42510301)
chr3 (385-434)||(31142619-31142668)
[»] chr1 (5 HSPs)
chr1 (9-130)||(43733406-43733526)
chr1 (9-130)||(47973395-47973514)
chr1 (9-130)||(10463752-10463872)
chr1 (391-446)||(43423711-43423766)
chr1 (391-445)||(51812517-51812571)
[»] chr8 (3 HSPs)
chr8 (9-130)||(25863696-25863816)
chr8 (167-222)||(29520489-29520544)
chr8 (391-446)||(42493541-42493596)
[»] chr7 (5 HSPs)
chr7 (392-446)||(41948509-41948563)
chr7 (394-446)||(38920789-38920841)
chr7 (391-446)||(40169641-40169696)
chr7 (391-446)||(42187462-42187517)
chr7 (385-446)||(36514442-36514503)
[»] chr5 (1 HSPs)
chr5 (187-222)||(2078582-2078617)
[»] chr2 (3 HSPs)
chr2 (369-444)||(23714498-23714573)
chr2 (369-444)||(24102170-24102245)
chr2 (393-446)||(6218961-6219014)


Alignment Details
Target: chr4 (Bit Score: 487; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 9 - 643
Target Start/End: Complemental strand, 42309368 - 42308730
Alignment:
Q  9 tactttattgagttaaattggaaccagatgtactgtctgaaaatttcctatttactgaattttagaagtttaagtgttgcttttcattctactctaatgt 108  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42309368 tactttattgagttaaattggaagcagatgtactgtctgaaaatttcctatttactgaattttagaagtttaagtgttgcttttcattctactctaatgt 42309269  T
Q  109 tctgaanccggttgatatatacntatttttagtttgaggntanaatatgtgttctaaaccttgctacacatagctagncccaagcccggataaaaggata 208  Q
    |||||| | ||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  42309268 tctgaatctggttgatatatacttatttttagtttgaggttagaatatgtgttctaaaccttgctacacatagctagtcccaagcccggataaaaggata 42309169  T
Q  209 gggttgtgttaggcatcaaacgtanacttattcgaatccctaacatgaatctaatatccaatagctgtanctagngntgttgtatgga--agagtgttgg 306  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||  ||||||||||    
T  42309168 gggttgtgttaggcctcaaacgtaaacttattcgaatccctaacatgaatctaatatccaatagctgtaactagtgatgttgtatggaacagagtgttgg 42309069  T
Q  307 gatctcnagaaccaacacgaaaataaattaggcttagaaaagctaangatgttttgtttgaaaggattaaaaatganncattatagagagttgggatagc 406  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  42309068 gatctcaagaaccaacacgaaaataaattaggcttagaaaagctaaagatgttttgtttgaaaggattaaaaatgaaacattatagagagttgggatagc 42308969  T
Q  407 acttataatagaaaagattgtggaaactaggcttatgtggggtgtgtttggtttataagagaagttgccatttctagaagtaggtaagagtgtgagaant 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |    
T  42308968 acttataatagaaaagattgtggaaactaggcttatgtggggtgtgtttggtttataagagaagttgtcatttctagaagtaggtaagagtgtgagaaat 42308869  T
Q  507 atcttccatgntttgnctagctagaccgttagnagagaganatactatnngtttttaanngaccaaaannccctttaatt-aaaaaccnatataagcttt 605  Q
    |||||||||| ||||  ||| ||||  || || ||||||| |||||||  ||||||||  ||| ||||  |||||||||| ||||||| |||||||||||    
T  42308868 atcttccatggtttggttagatagaaagtgagaagagagaaatactattagtttttaaatgacaaaaataccctttaattaaaaaaccaatataagcttt 42308769  T
Q  606 tctcaatcaaattgtganaaga-aanttgtggagagaga 643  Q
    |||| |||||||||||| |||| || |||||||||||||    
T  42308768 tctccatcaaattgtgagaagagaagttgtggagagaga 42308730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 385 - 446
Target Start/End: Complemental strand, 51252757 - 51252696
Alignment:
Q  385 cattatagagagttgggatagcacttataatagaaaagattgtggaaactaggcttatgtgg 446  Q
    ||||| ||||||||||| |||||| | || |||||||||| |||||||||||||||| ||||    
T  51252757 cattagagagagttggggtagcacctctagtagaaaagatggtggaaactaggcttaggtgg 51252696  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 391 - 446
Target Start/End: Original strand, 54470199 - 54470254
Alignment:
Q  391 agagagttgggatagcacttataatagaaaagattgtggaaactaggcttatgtgg 446  Q
    ||||||||||| |||||| |||| |||||||||| ||||||||||| |||| ||||    
T  54470199 agagagttggggtagcacctatagtagaaaagatggtggaaactagacttaagtgg 54470254  T

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Target: chr3 (Bit Score: 59; Significance: 2e-24; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 51569394 - 51569515
Alignment:
Q  9 tactttattgagttaaattggaaccagatgtactgtctgaaaatttcctatttactgaattttagaagtttaagtgttgcttttcattctactctaatgt 108  Q
    |||||||||||||||||||||||||||||||| ||||| |  |  |||  |||||||||||||| ||||||| ||||||||||||||||| |||||||||    
T  51569394 tactttattgagttaaattggaaccagatgtattgtcttactagctcccgtttactgaattttaaaagtttatgtgttgcttttcattctgctctaatgt 51569493  T
Q  109 tctgaanccggttgatatatac 130  Q
    || ||| | || || |||||||    
T  51569494 tccgaatctggctggtatatac 51569515  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 385 - 446
Target Start/End: Complemental strand, 36820257 - 36820196
Alignment:
Q  385 cattatagagagttgggatagcacttataatagaaaagattgtggaaactaggcttatgtgg 446  Q
    ||||| ||||||||||| |||||| |||| ||| |||||| |||||||||||||||| ||||    
T  36820257 cattagagagagttggggtagcacctatattagcaaagatggtggaaactaggcttaggtgg 36820196  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 394 - 446
Target Start/End: Complemental strand, 42510301 - 42510249
Alignment:
Q  394 gagttgggatagcacttataatagaaaagattgtggaaactaggcttatgtgg 446  Q
    ||||||||||||||| |||| |||||||||| ||||||| |||||||| ||||    
T  42510301 gagttgggatagcacctatagtagaaaagatagtggaaaataggcttaggtgg 42510249  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 385 - 434
Target Start/End: Complemental strand, 31142668 - 31142619
Alignment:
Q  385 cattatagagagttgggatagcacttataatagaaaagattgtggaaact 434  Q
    |||||||||||||||   |||||||||||||||| || ||||||||||||    
T  31142668 cattatagagagttgaagtagcacttataatagataaaattgtggaaact 31142619  T

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Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 43733406 - 43733526
Alignment:
Q  9 tactttattgagttaaattggaaccagatgtactgtctgaaaatttcctatttactgaattttagaagtttaagtgttgcttttcattctactctaatgt 108  Q
    |||||||||||||| |||||||||||||| ||||  || ||||||||||  ||||||||||||| ||| |   | ||||||||||||||| ||||||||     
T  43733406 tactttattgagttgaattggaaccagatatacta-cttaaaatttcctgcttactgaattttaaaaggtattgcgttgcttttcattctgctctaatgg 43733504  T
Q  109 tctgaanccggttgatatatac 130  Q
    | |||| | |||||||||||||    
T  43733505 tttgaatctggttgatatatac 43733526  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 47973514 - 47973395
Alignment:
Q  9 tactttattgagttaaattggaaccagatgtactgtctgaaaatttcctatttactgaattttagaagtttaagtgttgcttttcattctactctaatgt 108  Q
    |||||||||||||| |||||||||||||| |||||  |  |||||||||  ||||||||||||| ||| |   ||||||||||||||||| ||| ||||     
T  47973514 tactttattgagttgaattggaaccagatatactgctt--aaatttcctgcttactgaattttaaaaggtattgtgttgcttttcattctgctcgaatgg 47973417  T
Q  109 tctgaanccggttgatatatac 130  Q
    | |||| | |||||||||||||    
T  47973416 tttgaatctggttgatatatac 47973395  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 10463752 - 10463872
Alignment:
Q  9 tactttattgagttaaattggaaccagatgtactgtctgaaaatttcctatttactgaattttagaagtttaagtgttgcttttcattctactctaatgt 108  Q
    |||||||||||||| |||||||| ||||| ||||  || |||||||| |  ||||||||||||| ||| |   | ||||||||||||||| ||||||||     
T  10463752 tactttattgagttgaattggaatcagatatacta-cttaaaatttcttgcttactgaattttaaaaggtattgcgttgcttttcattctgctctaatgg 10463850  T
Q  109 tctgaanccggttgatatatac 130  Q
    | |||| | |||||||||||||    
T  10463851 tttgaatctggttgatatatac 10463872  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 391 - 446
Target Start/End: Original strand, 43423711 - 43423766
Alignment:
Q  391 agagagttgggatagcacttataatagaaaagattgtggaaactaggcttatgtgg 446  Q
    ||||||||||| || ||| |||| |||||||||| |||||||||||||||| ||||    
T  43423711 agagagttggggtaacacctatagtagaaaagatggtggaaactaggcttaggtgg 43423766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 391 - 445
Target Start/End: Original strand, 51812517 - 51812571
Alignment:
Q  391 agagagttgggatagcacttataatagaaaagattgtggaaactaggcttatgtg 445  Q
    ||||||||||| || ||  |||| |||||||||| ||||||||||||||||||||    
T  51812517 agagagttggggtaacaactatagtagaaaagatggtggaaactaggcttatgtg 51812571  T

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Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 25863816 - 25863696
Alignment:
Q  9 tactttattgagttaaattggaaccagatgtactgtctgaaaatttcctatttactgaattttagaagtttaagtgttgcttttcattctactctaatgt 108  Q
    |||||||||||||| |||||||| ||||| ||||  || |||||||| |  ||||||||||||| ||| |   | ||||||||||||||| ||||||||     
T  25863816 tactttattgagttgaattggaatcagatatacta-cttaaaatttcttgcttactgaattttaaaaggtattgcgttgcttttcattctgctctaatgg 25863718  T
Q  109 tctgaanccggttgatatatac 130  Q
    | |||| | |||||||||||||    
T  25863717 tttgaatctggttgatatatac 25863696  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 222
Target Start/End: Original strand, 29520489 - 29520544
Alignment:
Q  167 ccttgctacacatagctagncccaagcccggataaaaggatagggttgtgttaggc 222  Q
    |||||||| |||||||| | ||||||||||| |||||||| |||||||||||||||    
T  29520489 ccttgctatacatagctggtcccaagcccgggtaaaaggagagggttgtgttaggc 29520544  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 391 - 446
Target Start/End: Complemental strand, 42493596 - 42493541
Alignment:
Q  391 agagagttgggatagcacttataatagaaaagattgtggaaactaggcttatgtgg 446  Q
    ||||||||||| || ||| |||| ||||||||||||||||||||||||||| ||||    
T  42493596 agagagttggggtaacacctatagtagaaaagattgtggaaactaggcttaggtgg 42493541  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 392 - 446
Target Start/End: Original strand, 41948509 - 41948563
Alignment:
Q  392 gagagttgggatagcacttataatagaaaagattgtggaaactaggcttatgtgg 446  Q
    |||||||||  ||||||||| |||||||||||| |||||||||||||||| ||||    
T  41948509 gagagttggcgtagcacttacaatagaaaagatggtggaaactaggcttaagtgg 41948563  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 394 - 446
Target Start/End: Original strand, 38920789 - 38920841
Alignment:
Q  394 gagttgggatagcacttataatagaaaagattgtggaaactaggcttatgtgg 446  Q
    |||||||| |||||| |||| |||||||||| |||||||||||||||| ||||    
T  38920789 gagttggggtagcacctatagtagaaaagatggtggaaactaggcttaagtgg 38920841  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 391 - 446
Target Start/End: Original strand, 40169641 - 40169696
Alignment:
Q  391 agagagttgggatagcacttataatagaaaagattgtggaaactaggcttatgtgg 446  Q
    ||||| ||||| ||||||||||| |||||||||| ||||||| |||||||| ||||    
T  40169641 agagaattggggtagcacttatagtagaaaagatggtggaaaataggcttaggtgg 40169696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 391 - 446
Target Start/End: Original strand, 42187462 - 42187517
Alignment:
Q  391 agagagttgggatagcacttataatagaaaagattgtggaaactaggcttatgtgg 446  Q
    ||||||| ||| |||||| ||||||||||||||| ||||||| |||||||| ||||    
T  42187462 agagagtcggggtagcacctataatagaaaagatggtggaaaataggcttaggtgg 42187517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 385 - 446
Target Start/End: Complemental strand, 36514503 - 36514442
Alignment:
Q  385 cattatagagagttgggatagcacttataatagaaaagattgtggaaactaggcttatgtgg 446  Q
    ||||| ||||||||||| |||||| |||| |||||||||| || |||||||| |||| ||||    
T  36514503 cattagagagagttggggtagcacctatagtagaaaagatggtagaaactagacttaggtgg 36514442  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 222
Target Start/End: Complemental strand, 2078617 - 2078582
Alignment:
Q  187 cccaagcccggataaaaggatagggttgtgttaggc 222  Q
    |||||||||||||||||||| |||||||||||||||    
T  2078617 cccaagcccggataaaaggagagggttgtgttaggc 2078582  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 369 - 444
Target Start/End: Complemental strand, 23714573 - 23714498
Alignment:
Q  369 aggattaaaaatgann-cattatagagagttgggatagcacttataatagaaaagattgtggaaactaggcttatgt 444  Q
    ||||||||||||||   ||||| | ||||||||| |||||| |||| |||||||||| ||||||||||| |||||||    
T  23714573 aggattaaaaatgacgacattagatagagttggg-tagcacatatagtagaaaagatggtggaaactagacttatgt 23714498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 369 - 444
Target Start/End: Complemental strand, 24102245 - 24102170
Alignment:
Q  369 aggattaaaaatgann-cattatagagagttgggatagcacttataatagaaaagattgtggaaactaggcttatgt 444  Q
    ||||||||||||||   ||||| | ||||||||| |||||| |||| |||||||||| ||||||||||| |||||||    
T  24102245 aggattaaaaatgacgacattagatagagttggg-tagcacatatagtagaaaagatggtggaaactagacttatgt 24102170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 393 - 446
Target Start/End: Original strand, 6218961 - 6219014
Alignment:
Q  393 agagttgggatagcacttataatagaaaagattgtggaaactaggcttatgtgg 446  Q
    ||||||||| ||||||||||| |||||||||| ||||| | |||||||| ||||    
T  6218961 agagttggggtagcacttatagtagaaaagatagtggataataggcttaggtgg 6219014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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