View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0130Ase3 (Length: 336)
Name: NF0130Ase3
Description: NF0130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0130Ase3 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 7 - 328
Target Start/End: Complemental strand, 35849909 - 35849588
Alignment:
| Q |
7 |
taatagngaaacctttgttagtgttacagaaaaatgtagcaatacagtcattacaaagaggtcccgtgcnaggttcacgaacaaacccgtgctcgacagt |
106 |
Q |
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|||||| ||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
35849909 |
taatagagaaacctttgttattgttgcagaaaattgtagcaatacagtcattacaaagaggtcccgtgcaaggttcacaaacaaacccgtgctcgacagt |
35849810 |
T |
|
| Q |
107 |
tcctggccgcagccgtggacgctgcgctttagctgacgtgaatgtttccgaccatgttgcgcaaccaccaccaccacaaccacctatccaaccttaggng |
206 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
35849809 |
tcctggccgcagccgtggacgctgcgctttagctgatgtgaatctttccgaccatgttgcgcaaccaccaccaccacaaccacctatccaaccttaggtg |
35849710 |
T |
|
| Q |
207 |
ngatgtttggagcaatttccactaattaaggccagccagctagctgttgttcatataatagttgtttatgtgtacataaatttgttanaggcaatacttt |
306 |
Q |
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||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
35849709 |
tgatgtttggagcaatttccactaattaaggcaagccagccagctgttgttcatataatagttgtttatgtgtacataaatttgttatagacaatacttt |
35849610 |
T |
|
| Q |
307 |
ttcaattcaattagatggatat |
328 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
35849609 |
ttcaattcaattagatggatat |
35849588 |
T |
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