View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0130Ase30 (Length: 381)
Name: NF0130Ase30
Description: NF0130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0130Ase30 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 3 - 357
Target Start/End: Original strand, 660036 - 660400
Alignment:
| Q |
3 |
caacactgtcatcattatagtttagttcttgcttccnncnantattgtttctngtagaaagtacnncnnactaatcntaatggaaaacaattttcacacc |
102 |
Q |
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| T |
660036 |
caacaatgtcatcattatagtttagttcttgcatccatcaaatattgtttctagtagaaagtacaacaaactaatcataatggaaaacaattttcacacc |
660135 |
T |
|
| Q |
103 |
tgcattatattgtatcagtgtttgtttttgcaccaaagc----------atagcttttgcttgacttggcaacaacctaatcntatctatagncaaaatt |
192 |
Q |
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| T |
660136 |
tgcattatattgtatcagtgtttgtttttgcaccaaagcaaagggaagcatagcttttgcttgacttggcaacaacctaatcatatctatagtcaaaatt |
660235 |
T |
|
| Q |
193 |
ttatacactgatgtgcaatgtgcattagggctttatttgngttgtattttctccacatatattagcncgaatccaagataaatgaaaaaccagttcaaga |
292 |
Q |
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| T |
660236 |
ttatacactgatgtgcaatgtgcattagggctttatttgagttgtattttctccacatatattagcatgaatccaagataaatgaaaaactagttcaaga |
660335 |
T |
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| Q |
293 |
aatctgagttgaaaccaaataacttcctacctaggngtgaataatatacaaaatgcaagaaagag |
357 |
Q |
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| T |
660336 |
aatctgagttgaaaccaaataacttcctacctaggcatgaataatatacaaaatgcaagaaagag |
660400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 198 - 357
Target Start/End: Complemental strand, 22071131 - 22070977
Alignment:
| Q |
198 |
cactgatgtgcaatgtgcattagggctttatttgngttgtattttctccacatatattagcncgaatccaagataaatgaaaaaccagttcaagaaatct |
297 |
Q |
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| T |
22071131 |
cactgatgtgca---tgcattagggccatatttaagttgtattttctccacatatattagcatgaatccaagatcaattaaaaaccagtacagaaaattt |
22071035 |
T |
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| Q |
298 |
gagttgaaaccaaataacttcctacctaggngtgaataatatacaaaatgcaagaaagag |
357 |
Q |
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| T |
22071034 |
gagttgaaatcaaataacttcctatcaagggtttaata--atacaaaatgcaagaaagag |
22070977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 167
Target Start/End: Complemental strand, 22071593 - 22071542
Alignment:
| Q |
116 |
atcagtgtttgtttttgcaccaaagcatagcttttgcttgacttggcaacaa |
167 |
Q |
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| T |
22071593 |
atcagtgtttgtttttgcaccaaagcatagcttcagctcgacttggcaacaa |
22071542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 233 - 320
Target Start/End: Complemental strand, 22065139 - 22065052
Alignment:
| Q |
233 |
gttgtattttctccacatatattagcncgaatccaagataaatgaaaaaccagttcaagaaatctgagttgaaaccaaataacttcct |
320 |
Q |
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| T |
22065139 |
gttgtattttctccacatatgtaaacatgaatccaagatcaactaaaaactagttcaagaaatttgagttgaaatcgaataatttcct |
22065052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 315
Target Start/End: Complemental strand, 15963311 - 15963258
Alignment:
| Q |
262 |
aatccaagataaatgaaaaaccagttcaagaaatctgagttgaaaccaaataac |
315 |
Q |
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|||||||||| ||| |||||| |||| |||||| |||| ||||||||||||||| |
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| T |
15963311 |
aatccaagatgaattaaaaacaagtttaagaaaactgaattgaaaccaaataac |
15963258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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