View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0130Ase7 (Length: 203)
Name: NF0130Ase7
Description: NF0130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0130Ase7 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 10 - 196
Target Start/End: Original strand, 12697981 - 12698167
Alignment:
| Q |
10 |
taatagaagacnctgctttgaaagttacaagtcttgaagagaacattttcaatgggtagtttaactgttggaaaaggacattcaattcccttcgctagca |
109 |
Q |
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| T |
12697981 |
taatagaagacactactttgaaagttacaagtcttgaacagaacattttcaatgggtagtttaactgttggaaaaggacattcaattcccttcgctagca |
12698080 |
T |
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| Q |
110 |
gcaattcacatggtttaggaaccacgttacttgtaactccagaaacataacatcagtgcnnttatgatatgaattgtaaatgatatt |
196 |
Q |
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| T |
12698081 |
gcaattcacatggtttaggaaccacgttacttgtaactccagaaacataacatcagtgcaattatgatataaattataaatgatatt |
12698167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 4e-46; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 14 - 154
Target Start/End: Original strand, 45077813 - 45077953
Alignment:
| Q |
14 |
agaagacnctgctttgaaagttacaagtcttgaagagaacattttcaatgggtagtttaactgttggaaaaggacattcaattcccttcgctagcagcaa |
113 |
Q |
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| T |
45077813 |
agaagacactactttggaagttacaagtcttgaattgaacattttcgatggctagtttatctgttggaaaaggacattcaatttccttctcttgcagcaa |
45077912 |
T |
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| Q |
114 |
ttcacatggtttaggaaccacgttacttgtaactccagaaa |
154 |
Q |
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| T |
45077913 |
ttcacatggtttaggaaccacattacttgtaactccagaaa |
45077953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 14 - 154
Target Start/End: Original strand, 45082109 - 45082249
Alignment:
| Q |
14 |
agaagacnctgctttgaaagttacaagtcttgaagagaacattttcaatgggtagtttaactgttggaaaaggacattcaattcccttcgctagcagcaa |
113 |
Q |
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| T |
45082109 |
agaagacactactttggaagttgcaagtcttgaattgaacattttcaatgggtagtttatctcttggaaaaggacattcaatttccttctctttcagcag |
45082208 |
T |
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| Q |
114 |
ttcacatggtttaggaaccacgttacttgtaactccagaaa |
154 |
Q |
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| T |
45082209 |
ttcacatggtttaggaaccacattacttgtaactccagaaa |
45082249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 25 - 157
Target Start/End: Original strand, 45067034 - 45067166
Alignment:
| Q |
25 |
ctttgaaagttacaagtcttgaagagaacattttcaatgggtagtttaactgttggaaaaggacattcaattcccttcgctagcagcaattcacatggtt |
124 |
Q |
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| T |
45067034 |
ctttgaaagttacaagtcttgaactgaacattttcaatgggtagtttatctgttggaaaaggacattcgattttcttctctggcagcatatcacatggtt |
45067133 |
T |
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| Q |
125 |
taggaaccacgttacttgtaactccagaaacat |
157 |
Q |
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| T |
45067134 |
taggaaccgcattacttgcaactccagaaacat |
45067166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 31 - 157
Target Start/End: Original strand, 45074597 - 45074726
Alignment:
| Q |
31 |
aagttacaagtcttgaagagaacattttcaatgggtagtttaactgttggaaaaggacattcaa---ttcccttcgctagcagcaattcacatggtttag |
127 |
Q |
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||||||||||||||||| ||||||||||||||| |||||| | ||||||||||||||||||| || | ||| || |||||||||||| ||| ||| |
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| T |
45074597 |
aagttacaagtcttgaactgaacattttcaatggtaagtttatcagttggaaaaggacattcaaatttttctttctctgccagcaattcacagggtgtag |
45074696 |
T |
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| Q |
128 |
gaaccacgttacttgtaactccagaaacat |
157 |
Q |
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|| ||| |||||||||||||||||||||| |
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| T |
45074697 |
gactcacattacttgtaactccagaaacat |
45074726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 33 - 157
Target Start/End: Original strand, 34504368 - 34504492
Alignment:
| Q |
33 |
gttacaagtcttgaagagaacattttcaatgggtagtttaactgttggaaaaggacattcaattcccttcgctagcagcaattcacatggtttaggaacc |
132 |
Q |
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||||||||||||||| |||||| |||||| | | |||| |||||||||| |||||||||||| |||| || ||||| |||||||||||||||||| |
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| T |
34504368 |
gttacaagtcttgaactgaacatcttcaatagccaatttatctgttggaaagggacattcaattttcttctctgacagcagatcacatggtttaggaacc |
34504467 |
T |
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| Q |
133 |
acgttacttgtaactccagaaacat |
157 |
Q |
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| T |
34504468 |
acattacttgtaactccagaaacat |
34504492 |
T |
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