View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0130Ase8 (Length: 418)
Name: NF0130Ase8
Description: NF0130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0130Ase8 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 10 - 412
Target Start/End: Complemental strand, 39281703 - 39281299
Alignment:
| Q |
10 |
cagctcttgcaacgtgcagttatgtatggcaagaatgaaatccttcaaaagtgatgtatctacngtgaaatttccacttaccgctatgtgaagattattg |
109 |
Q |
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| T |
39281703 |
cagctcttgcaacgtgcagttatgtatggcaaaaacgaaatccttcaaaagtgatgtatctacagcaaaatttccacttaccgctatgtgaagattattg |
39281604 |
T |
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| Q |
110 |
angatggatggggganagccaannnnctaacacataaatatggcaatgcatcctatggatgaaacgtggcggataatagcggctagccaaaagccccnat |
209 |
Q |
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| T |
39281603 |
atgatggatggtggaaagccaaaaatctgccacataaatatggcaatgcatcctatggatgaaacgtggcggataatagcggctagccaaaagccccaat |
39281504 |
T |
|
| Q |
210 |
ttcccatgagaatagtaaattgctcagaataagaattactatct--gacaattcaaatcaatgagaattataaagtgaatctcttatggcaggagtttta |
307 |
Q |
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| T |
39281503 |
ttcccatgagaatagtaaattgctcagaatcagaattactatatcagacaattcaaatcaacgagaattatacagtgaatctcttatggcaggagtttta |
39281404 |
T |
|
| Q |
308 |
aaacaccaaattggccttttaacgagatgaagctctctgttccaccaaataaacatagaccaaggtcttactccctttgatgcttttttacaaaataatt |
407 |
Q |
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| T |
39281403 |
aaacaccaaattggccttttaacgagatgaagctctctgttccaccaaataaacatagaccaaggtcttactccctttgatgcttttttacaaaataatt |
39281304 |
T |
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| Q |
408 |
tatta |
412 |
Q |
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| T |
39281303 |
tatta |
39281299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 296 - 410
Target Start/End: Original strand, 17348789 - 17348903
Alignment:
| Q |
296 |
gcaggagttttaaaacaccaaattggccttttaacgagatgaagctctctgttccaccaaataaacatagaccaaggtcttactccctttgatgcttttt |
395 |
Q |
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||||||| | |||||||||||||||||||| ||| || | |||||| |||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
17348789 |
gcaggagctataaaacaccaaattggccttctaatatgaaaacgctctccattccaccaaataaacatagaagaaggtcttactccctttgatacttttt |
17348888 |
T |
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| Q |
396 |
tacaaaataatttat |
410 |
Q |
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| T |
17348889 |
tacaaaacaatttat |
17348903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 231
Target Start/End: Original strand, 17348557 - 17348648
Alignment:
| Q |
139 |
acacataaatatggcaatgcatcctatggatgaaacgtggcggataatagcggctagccaaaagccccnatttcccatgagaatagtaaattg |
231 |
Q |
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| T |
17348557 |
acacacaaatatggcaatgcaccctttggatgaaatgtggcggattatggaggctag-taaaagtcctgatttgccatgagaatagtaaattg |
17348648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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