View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0130Eco14 (Length: 811)
Name: NF0130Eco14
Description: NF0130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0130Eco14 |
 | |
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| [»] scaffold0028 (3 HSPs) |
| | |
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| [»] scaffold0209 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 34 - 579
Target Start/End: Original strand, 20422791 - 20423339
Alignment:
| Q |
34 |
aagacacattttagntgattttcttgctaattttcaatttcagattgctatatcngnncagcagataancatgtctgcgttttcatgttggagcaatttc |
133 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||| |||||||||||||||||||| |
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| T |
20422791 |
aagacacattttagttgattttcttgctaattttcaatttcagattgctatatctgttcagcagataatcatgtctgcgatttcatgttggagcaatttc |
20422890 |
T |
|
| Q |
134 |
agttgttgatatagcattaggtgnngcttgattgttgnatatcntattgtattatgaaaatcattttttcattctaatgcatgaactaaactttttgttt |
233 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||| ||| |
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|
| T |
20422891 |
agttgttgatatagcattaggtgtttcttgattgttgtatatcttattgtattatgtaaataattttttcattctaatgcatgaactaaacttttttttt |
20422990 |
T |
|
| Q |
234 |
-cttgcttggngtttagaatcaaatgaacatacaaaatctaaaccttcaaactaantctgctattctcaaggctctgtgtatnctgaagaaagagggcta |
332 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||| |
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|
| T |
20422991 |
tcttgcttggtgtttagaatcaaatgaacatacaaaatctaaaccttcaaactaaatctgctattctcaaggttctgtgtatactgaagaaagagggcta |
20423090 |
T |
|
| Q |
333 |
tctactaggatgaccaaggctcatcaataaatttgaagtttcactgttgttnaatagtacctgtgaattttatnaaatttgcccgcttngcatatccttg |
432 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||| ||||||||||| |
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|
| T |
20423091 |
tctactaggatgaccaaggttcatcaataaatttgaagtttcactgttgtttaatagtacctgtgaattttatttaatttggtcgctttgcatatccttg |
20423190 |
T |
|
| Q |
433 |
caggcacagggagatntgtgacgatatcatttttgctaacaatgncaactcacttctcaggttagntagcnanccantcaatagggtnngtgttgggttt |
532 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||| ||| | | |||||||||| ||||||||||| |
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|
| T |
20423191 |
caggtacagggagatatgtgacgatatcatttttgctaacaatgtcgactcacttctcaggttagttagttaattaatcaatagggtttgtgttgggttt |
20423290 |
T |
|
| Q |
533 |
tttattttntccaagc-aaaggtagtg-aacctatgcctganactattc |
579 |
Q |
| |
|
|||||||| || |||| |||||||||| ||||||||| ||| ||||||| |
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|
| T |
20423291 |
tttattttttcaaagcaaaaggtagtgaaacctatgcatgagactattc |
20423339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 174; Significance: 3e-93; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 34 - 269
Target Start/End: Complemental strand, 9883401 - 9883166
Alignment:
| Q |
34 |
aagacacattttagntgattttcttgctaattttcaatttcagattgctatatcngnncagcagataancatgtctgcgttttcatgttggagcaatttc |
133 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||| | |||||||||||||||||||| |
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|
| T |
9883401 |
aagacacattttagttgattttcttgctaattttcaatttcagattgctatatctgttcagcagataatcatgtctgagatttcatgttggagcaatttc |
9883302 |
T |
|
| Q |
134 |
agttgttgatatagcattaggtgnngcttgattgttgnatatcntattgtattatgaaaatcattttttcattctaatgcatgaactaaactttttgttt |
233 |
Q |
| |
|
|||| |||||||||||||||||| |||||||| || ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
9883301 |
agtttttgatatagcattaggtgtttcttgattggtgtatatcttattgtattatgtaaatcattttttcattctaatgcatgaactaaactttctgttt |
9883202 |
T |
|
| Q |
234 |
cttgcttggngtttagaatcaaatgaacatacaaaa |
269 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||| |
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|
| T |
9883201 |
cttgcttggtgtttggaatcaaatgaacatacaaaa |
9883166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 114; Significance: 2e-57; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 49 - 285
Target Start/End: Complemental strand, 4652239 - 4652003
Alignment:
| Q |
49 |
tgattttcttgctaattttcaatttcagattgctatatcngnncagcagataancatgtctgcgttttcatgttggagcaatttcagttgttgatatagc |
148 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| | ||| |||||| | ||| || | |||||||||||| |||||| | ||||||||||||| |
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|
| T |
4652239 |
tgattttcttgctaattttcgatttcagattgctatatatgttcagtagataatcgtgtatgagatttcatgttggatcaatttgatttgttgatatagc |
4652140 |
T |
|
| Q |
149 |
attaggtgnngcttgattgttgnatatcntattgtattatgaaaatcattttttcattctaatgcatgaactaaactttttgtttcttgcttggngttta |
248 |
Q |
| |
|
|| ||||| |||||||| || || || |||| |||| | |||||||||||||||||||| ||||| ||||||||| | ||||| |||||| ||||| |
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|
| T |
4652139 |
ataaggtgtttcttgattgctgtatctcttattatattctataaatcattttttcattctaaggcatgtactaaacttcatatttctcgcttggtgttta |
4652040 |
T |
|
| Q |
249 |
gaatcaaatgaacatacaaaatctaaaccttcaaact |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
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|
| T |
4652039 |
gaatcaaatgaacatacaaaatctaaaccttcaaact |
4652003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 342 - 389
Target Start/End: Complemental strand, 4652000 - 4651953
Alignment:
| Q |
342 |
atgaccaaggctcatcaataaatttgaagtttcactgttgttnaatag |
389 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||||||||| ||||| |
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|
| T |
4652000 |
atgaccaaggttcatcaataaatttgcagtttcactgttgtttaatag |
4651953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 391 - 501
Target Start/End: Complemental strand, 4651877 - 4651768
Alignment:
| Q |
391 |
acctgtgaattttatnaaatttgcccgcttngcatatccttgcaggcacagggagatntgtgacgatatcatttttgctaacaatgncaactcacttctc |
490 |
Q |
| |
|
|||||||||||| || |||||| ||||| |||||||||| |||| ||| ||||| | ||| | |||||||| |||||||||| | ||||||||||| |
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|
| T |
4651877 |
acctgtgaatttgatttaatttggtcgctttgcatatcctt-caggtacaacgagatattcgacaacatcattttggctaacaatgtcgactcacttctc |
4651779 |
T |
|
| Q |
491 |
aggttagntag |
501 |
Q |
| |
|
||||||| ||| |
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|
| T |
4651778 |
aggttagttag |
4651768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 98; Significance: 8e-48; HSPs: 3)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 240 - 389
Target Start/End: Complemental strand, 19456 - 19307
Alignment:
| Q |
240 |
tggngtttagaatcaaatgaacatacaaaatctaaaccttcaaactaantctgctattctcaaggctctgtgtatnctgaagaaagagggctatctacta |
339 |
Q |
| |
|
||| ||||||||||||||||||||||| |||||||||||||||||| | ||| |||||||||| ||||||||| || ||||||||||||||||||||| |
|
|
| T |
19456 |
tggtgtttagaatcaaatgaacatacagaatctaaaccttcaaactcaatctaaaattctcaaggttctgtgtatactaaagaaagagggctatctacta |
19357 |
T |
|
| Q |
340 |
ggatgaccaaggctcatcaataaatttgaagtttcactgttgttnaatag |
389 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||| ||||||| ||||| |
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|
| T |
19356 |
ggatgaccaaggttcatcaataaatttgcagtttcattgttgtttaatag |
19307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 389 - 535
Target Start/End: Complemental strand, 19231 - 19085
Alignment:
| Q |
389 |
gtacctgtgaattttatnaaatttgcccgcttngcatatccttgcaggcacagggagatntgtgacgatatcatttttgctaacaatgncaactcacttc |
488 |
Q |
| |
|
||||||||||||||||| |||||| |||| ||||||||||||||| ||| ||||| | |||||| |||||||| |||||| ||| | ||||||||| |
|
|
| T |
19231 |
gtacctgtgaattttatttaatttggttgctttgcatatccttgcaggtacaacgagatatttgacgacatcattttggctaacgatgtcgactcacttc |
19132 |
T |
|
| Q |
489 |
tcaggttagntagcnanccantcaatagggtnngtgttgggtttttt |
535 |
Q |
| |
|
||||||||| ||| | | |||||||||| ||||||| |||||| |
|
|
| T |
19131 |
tcaggttagttagttaattaatcaatagggtttgtgttggttttttt |
19085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 19506 - 19458
Alignment:
| Q |
38 |
cacattttagntgattttcttgctaattttcaatttcagattgctatat |
86 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
19506 |
cacattttagttgattttcttgctaatttttgatttcagattactatat |
19458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 9e-20; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 73 - 255
Target Start/End: Original strand, 39090843 - 39091027
Alignment:
| Q |
73 |
tcagattgctatatcngnncagcagataancatgtctgcgttttcatgttggagcaatttcagttgttgatatagcattaggtgnngc--ttgattgttg |
170 |
Q |
| |
|
||||||||||||||| |||||||||| ||||| || | |||||||||||| |||||| | |||||||||||||| || || | ||||||||| |
|
|
| T |
39090843 |
tcagattgctatatcatttcagcagataatcatgtatgagatttcatgttggatcaatttgatttgttgatatagcacaagatgtttcctgtgattgttg |
39090942 |
T |
|
| Q |
171 |
natatcntattgtattatgaaaatcattttttcattctaatgcatgaactaaactttttgtttcttgcttggngtttagaatcaa |
255 |
Q |
| |
|
||||| |||||||| || | | ||||||||||||||||||| |||||||||| ||| |||| | |||| |||||||||||| |
|
|
| T |
39090943 |
tatatcttattgtatgttgttatttattttttcattctaatgcacaaactaaacttcttgcttctcggttggtgtttagaatcaa |
39091027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 257 - 367
Target Start/End: Original strand, 39094349 - 39094459
Alignment:
| Q |
257 |
tgaacatacaaaatctaaaccttcaaactaantctgctattctcaaggctctgtgtatnctgaagaaagagggctatctactaggatgaccaaggctcat |
356 |
Q |
| |
|
|||||| | ||| |||||||||||||||| | || | |||||| ||| |||||| || |||||||||||||||||||| |||||||||| |||| |||| |
|
|
| T |
39094349 |
tgaacacataaagtctaaaccttcaaactcaatccacaattctcgaggttctgtggatactgaagaaagagggctatcttctaggatgactaaggttcat |
39094448 |
T |
|
| Q |
357 |
caataaatttg |
367 |
Q |
| |
|
|||||||||| |
|
|
| T |
39094449 |
taataaatttg |
39094459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 417 - 501
Target Start/End: Complemental strand, 22068790 - 22068706
Alignment:
| Q |
417 |
gcttngcatatccttgcaggcacagggagatntgtgacgatatcatttttgctaacaatgncaactcacttctcaggttagntag |
501 |
Q |
| |
|
|||| ||||||||||||||| |||| |||| | |||||| |||||||| ||||| ||| | |||||||||||||||||| ||| |
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|
| T |
22068790 |
gctttgcatatccttgcaggtacagcaagatatttgacgacatcattttggctaatgatgtcgactcacttctcaggttagttag |
22068706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0209
Description:
Target: scaffold0209; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 16521 - 16569
Alignment:
| Q |
38 |
cacattttagntgattttcttgctaattttcaatttcagattgctatat |
86 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
16521 |
cacattttagttgattttcttgctaatttttgatttcagattactatat |
16569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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