View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0130Eco16 (Length: 169)
Name: NF0130Eco16
Description: NF0130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0130Eco16 |
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Alignment Details
Target: chr5 (Bit Score: 115; Significance: 1e-58; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 10 - 166
Target Start/End: Complemental strand, 37164002 - 37163846
Alignment:
| Q |
10 |
acctantatttgttgcttgagnccaaaaccacactggaactacttctgagattctagcntcagaantatccaactcttgaatatgtttttgattccgcaa |
109 |
Q |
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| T |
37164002 |
acctaatatttgttgcttgagtctaaaaccacactggaactacatctgagattctagcatcagaaatatccaactcttgaatatgtttttgattccgcaa |
37163903 |
T |
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| Q |
110 |
ccactttggaaagttaggacctaaattacaagaccttancattgngtatgttaattg |
166 |
Q |
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| T |
37163902 |
ccactttggaaagttaggacctgaattacaagaccttaataatgtgtatgtcaattg |
37163846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 37131537 - 37131407
Alignment:
| Q |
17 |
atttgttgcttgagnccaaaaccacactggaactacttctgagattctagcntcagaantatccaactcttgaatatgtttttgattccgcaaccacttt |
116 |
Q |
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| T |
37131537 |
atttgttgtttgagtccaaaaccacactggaactacatctgagcttcctgcatcagaaatgtctaacacttgaagatgtttttgactctgtaaccatttt |
37131438 |
T |
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| Q |
117 |
ggaaagttaggacctaaattacaagacctta |
147 |
Q |
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| T |
37131437 |
ggaaatctaggccctaaaatacaagacctta |
37131407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 139
Target Start/End: Complemental strand, 37138619 - 37138496
Alignment:
| Q |
16 |
tatttgttgcttgagnccaaaaccacactggaactacttctgagattctagcntcagaantatccaactcttgaatatgtttttgattccgcaaccactt |
115 |
Q |
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| T |
37138619 |
tatttgttgcttgagtccaaaaccatattggaactacatctgaaattccagcattagaaatgtccaatgcttgaagttgtttttgactctgcaaccattt |
37138520 |
T |
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| Q |
116 |
tggaaagttaggacctaaattaca |
139 |
Q |
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||||| |||| ||||||||||| |
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| T |
37138519 |
aggaaaactaggtcctaaattaca |
37138496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.0000000000009
Query Start/End: Original strand, 10 - 147
Target Start/End: Original strand, 35143854 - 35143991
Alignment:
| Q |
10 |
acctantatttgttgcttgagnccaaaaccacactggaactacttctgagattctagcntcagaantatccaactcttgaatatgtttttgattccgcaa |
109 |
Q |
| |
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||||| ||| |||| |||||| ||||||||| ||||||||| | |||| ||||| ||| |||||| | |||| | | | || || ||||||| || |||| |
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| T |
35143854 |
acctaatatctgttccttgagtccaaaaccatactggaactgcatctgtgattccagcatcagaaatgtccaccacctcaagatatttttgactctgcaa |
35143953 |
T |
|
| Q |
110 |
ccactttggaaagttaggacctaaattacaagacctta |
147 |
Q |
| |
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||| |||||||| |||| ||||| |||||||||||| |
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| T |
35143954 |
ccattttggaaaactaggtcctaatatacaagacctta |
35143991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 74
Target Start/End: Complemental strand, 38748220 - 38748156
Alignment:
| Q |
10 |
acctantatttgttgcttgagnccaaaaccacactggaactacttctgagattctagcntcagaa |
74 |
Q |
| |
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||||| |||| ||||||||| |||||||||||||||||| || |||||||||| ||| |||||| |
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| T |
38748220 |
acctaatattcgttgcttgattccaaaaccacactggaacaacatctgagattccagcttcagaa |
38748156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 147
Target Start/End: Original strand, 3023586 - 3023717
Alignment:
| Q |
16 |
tatttgttgcttgagnccaaaaccacactggaactacttctgagattctagcntcagaantatccaactcttgaatatgtttttgattccgcaaccactt |
115 |
Q |
| |
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||||||||||||||| ||| |||||||||||||| || |||||||||| ||| | |||| | |||| | ||||| || ||||||| |||| | ||| || |
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| T |
3023586 |
tatttgttgcttgagtccagaaccacactggaacaacatctgagattccagcattagaaatttccaccctttgaagatatttttgactccgtagccattt |
3023685 |
T |
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| Q |
116 |
tggaaagttaggacctaaattacaagacctta |
147 |
Q |
| |
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||||| | || |||||| |||||||||||| |
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| T |
3023686 |
cggaaaacttggccctaaagtacaagacctta |
3023717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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