View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0130Eco21 (Length: 399)
Name: NF0130Eco21
Description: NF0130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0130Eco21 |
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Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 11 - 391
Target Start/End: Original strand, 7238111 - 7238490
Alignment:
| Q |
11 |
tgagaggttcagctctgcntgccttgcaagggactaattatgancttggaaagaangctatcttgnaactaatggatgttgnggacgaatacntttctga |
110 |
Q |
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| T |
7238111 |
tgagaggttcagctctgcatgccttgcaagggactaattatgaacttggaaagaaagctatcttggaactaatggatgctgtggacgaatacatttctga |
7238210 |
T |
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| Q |
111 |
ncccgtgcgacagcttgacaaaccttttttaatgccaatagaagatattttctctnttcgggnaagtagaaatatcataccttgaacaaaattattctca |
210 |
Q |
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| T |
7238211 |
acccgtgcgacagcttgacaaaccttttttaatgccaatagaagatattttctctattcaggtaagtagaaatatcataccttgaacaaaattattctca |
7238310 |
T |
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| Q |
211 |
ttcatgatgcaatgctacattctgttctgtatttactcctccacatatgttgtgaacttcctgaggttccatccactatctatggtttatgtgaagggnc |
310 |
Q |
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| T |
7238311 |
ttcatgatgccatgctacattctgttctgtatttactcctccacatatgttgtgaacttcctgatgttccatccactatctatggttcatgtgaaggggc |
7238410 |
T |
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| Q |
311 |
gngaaactgttgccactggncgtgttgaacaaggnactatcaaagtttgntgaagagnttgagatacnnnnattgaaacag |
391 |
Q |
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| T |
7238411 |
gtggaactgttgccactggtcgtgttgaacaaggtactatcaaag-ttggtgaagaggttgagatactaggattgaaacag |
7238490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 107 - 377
Target Start/End: Complemental strand, 32407010 - 32406762
Alignment:
| Q |
107 |
ctgancccgtgcgacagcttgacaaaccttttttaatgccaatagaagatattttctctnttcgggnaagtagaaatatcataccttgaacaaaattatt |
206 |
Q |
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| T |
32407010 |
ctgatcccgttcgacagctttatagaccttttgtaatgccaatagaagatattttctatattcaggtaagtagaaatatcatacagtgaacaaaattatt |
32406911 |
T |
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| Q |
207 |
ctcattcatgatgcaatgctacattctgttctgtatttactcctccacatatgttgtgaacttcctgaggttccatccactatctatggtttatgtgaag |
306 |
Q |
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| T |
32406910 |
ttc---------------------tctgttctgtatttactcctccacatatgttgtcaacttcctgatgttccttccactatcttcggtttatgggaag |
32406832 |
T |
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| Q |
307 |
ggncgngaaactgttgccactggncgtgttgaacaaggnactatcaaagtttgntgaagagnttgagatac |
377 |
Q |
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| T |
32406831 |
gggcgtggaactgttgccactggtcatgttgaacaaggtactatcaaag-ttggtgaagaggttgaaatac |
32406762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 32407069 - 32407011
Alignment:
| Q |
30 |
tgccttgcaagggactaattatgancttggaaagaangctatcttgnaactaatggatg |
88 |
Q |
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||||||||||||||||||| | || || ||| |||| ||||||||| |||||||||||| |
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| T |
32407069 |
tgccttgcaagggactaatgaagaactaggagagaaagctatcttgaaactaatggatg |
32407011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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