View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0130Eco25 (Length: 574)
Name: NF0130Eco25
Description: NF0130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0130Eco25 |
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Alignment Details
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 174 - 549
Target Start/End: Original strand, 35510760 - 35511135
Alignment:
| Q |
174 |
gttgtgagctaattattcccttgaaagtgaatttacagcattaattgttattgagtgattaaccaagaaatatgcngtttatggagtagccactaaatat |
273 |
Q |
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| T |
35510760 |
gttgtgagctaattattcccttgaaagtgaatttacagcattaattgttattgagtgattaaccaagaaatatgcagtttatggagtagccactaaatat |
35510859 |
T |
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| Q |
274 |
ttttcaactagtttgaacacgaggggcatggagatggaggagaattgtattttacttacaagcattattaaaatttcaaaccttctgattctaaattgtg |
373 |
Q |
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| T |
35510860 |
ttttcaactagtttgaacacgaggggcatggagatggaggagaattgtattttacttacaagcattattaaaatttcaaaccttctgattctaaattgtg |
35510959 |
T |
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| Q |
374 |
aaaactagagtacttgctatgaatgatatgcttgttacatatgctttgactgaaattctgcctgncaggtnttgcatgatgtgcagaaaagccgaagaac |
473 |
Q |
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| T |
35510960 |
aaaactagagtacttgctatgaatgatatgcttgttacatatgctttgactgaaattctgcctggtaggttttgcatgatgtgcagaaaagccgtataac |
35511059 |
T |
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| Q |
474 |
tgattattttgnttgaatgccatgacattactcttaactcatagctacattagaattttcttacgagnttaataaa |
549 |
Q |
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| T |
35511060 |
tgattattttgtttgaatgccatgacattactcttaactcatagctacattagaattttcttacgagtttaataaa |
35511135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 8 - 174
Target Start/End: Original strand, 35510572 - 35510737
Alignment:
| Q |
8 |
ttggnagataattgagnctcttaagcnngttgtcctaggtctagaagagngtcatttgggaaatgtcaacctcttaaatacttcgacgagttagactcta |
107 |
Q |
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| T |
35510572 |
ttggtagataat-gagtctcttaagcatgttgtcctaggtctagaagaatctcatttgggaaatgtcaacctcttaaatacttcgacgagttagactcta |
35510670 |
T |
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| Q |
108 |
atcgtagatcgnggatncccgggttcatgcttaattttactttttagttcgcatgccgttttttaag |
174 |
Q |
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| T |
35510671 |
accgtagatcgtggatacacgggttcatgcttaattttactttttagttcgcatgccgttttttaag |
35510737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 175 - 261
Target Start/End: Original strand, 35502295 - 35502387
Alignment:
| Q |
175 |
ttgtgagctaattattcccttgaa---agtgaatttacagcattaat---tgttattgagtgattaaccaagaaatatgcngtttatggagta |
261 |
Q |
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| T |
35502295 |
ttgtgagctaattattcccttgaagaaaggtaatttacagcattattagttgttattgagtgtttaattaagaaatatgcagtttatgaagta |
35502387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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