View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0130Eco29 (Length: 884)
Name: NF0130Eco29
Description: NF0130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0130Eco29 |
 | |
|
| [»] scaffold1416 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 482; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 8 - 625
Target Start/End: Complemental strand, 9803137 - 9802517
Alignment:
| Q |
8 |
atgttgaggctagaaaatttgattgtttgaataaagccatggagaccgaacttacngctcttgaacaanctggtacttaaaaacttgttgatttacctcc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9803137 |
atgttgaggctagaaaatttgattgtttgaataaagctatggagactgaacttacagctcttgaacaaactggtacttaaaaacttgttgatttacctcc |
9803038 |
T |
|
| Q |
108 |
aaacatcnnaccaataggctgcatatgggtttacaagattaaacatcatgcngatggttccntanaaagattcaaagcacgtttggttgctaa-gggata |
206 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||| |||||| |
|
|
| T |
9803037 |
aaacatcaaaccaataggctgcatatgggtttacaagattaaacatcatgcagatggttccatagaaagattcaaagcacgtttggttgctaaagggata |
9802938 |
T |
|
| Q |
207 |
cnatcagattgaaggtttgaattactaggacacatactcacccgtagctaagcttacgactgtcatactcattattgctttggcatccattcaccnttgg |
306 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9802937 |
caatcagattgaaggtttgaattactaggacacatactcacttgtagctaagcttacgactgtcatactcattattgctttggcatccattcaccattgg |
9802838 |
T |
|
| Q |
307 |
nttatccatcaatatgncaataatgcttttcttcatggcgacttgcaagaaaatgtgtacatgtnncttcctccaggtgttaaaacatccnaaccaaatc |
406 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
9802837 |
tttatccatcaatatgtcaataatgcttttcttcatggcgacttgcaagaaaatgtgtacatgtaacttcctccaggtgttaaaacatccaaaccaaatc |
9802738 |
T |
|
| Q |
407 |
aagtttgcaaactgattaaatctctctatggattaaagcaagctagcaganagtggtatgagaagctcacttcattacttgtggctcanggtttcaagca |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
9802737 |
aagtttgcaaactgattaaatctctctatggattaaagcaagctagcagaaagtggtatgagaagctcacttcattacttgtggctcaaggtttcaagca |
9802638 |
T |
|
| Q |
507 |
ngcaaattcnnatcactctctattca-cnaattttcatcttcttcatacacnatactgcttgccnatggaganaaaatcatnctagcggtttattcnctt |
605 |
Q |
| |
|
|||||||| ||||||||||||||| | |||||||||||||||||||||| |||||||||| | ||| ||| |||||||| ||||| | |||| ||| |
|
|
| T |
9802637 |
agcaaattcatatcactctctattcaccaaattttcatcttcttcatacacaatactgcttgtctatgtagataaaatcattctagcaggcaattcactt |
9802538 |
T |
|
| Q |
606 |
tctgaa-ttaaacacatcaaa |
625 |
Q |
| |
|
|||||| |||||||||||||| |
|
|
| T |
9802537 |
tctgaatttaaacacatcaaa |
9802517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 12 - 515
Target Start/End: Complemental strand, 37738135 - 37737629
Alignment:
| Q |
12 |
tgaggctagaaaatttgattgtttgaataaagccatggagaccgaacttacngctcttgaacaanctggtacttaaaaacttgttgatttacctccaaac |
111 |
Q |
| |
|
|||||| || || ||||| |||| ||| || |||||| |||| |||||| | |||||||||||| ||||||||| ||| | |||||||||||||| ||| |
|
|
| T |
37738135 |
tgaggccagtaagtttgactgttggaacaaggccatgaagactgaacttgctgctcttgaacaaactggtacttggaaattggttgatttacctcctaac |
37738036 |
T |
|
| Q |
112 |
atcnnaccaataggctgcatatgggtttacaagattaaacatcatgcngatggttccntanaaagattcaaagcacgtttggttgctaagggatacnatc |
211 |
Q |
| |
|
||| |||||||||||||| ||||||||| ||||| ||||||||||| ||||| ||| || |||||||||||||| |||| ||||||||||||||| ||| |
|
|
| T |
37738035 |
atcaaaccaataggctgcagatgggtttataagatcaaacatcatgcagatggatccatagaaagattcaaagcatgtttagttgctaagggatacaatc |
37737936 |
T |
|
| Q |
212 |
agattgaaggtttgaattactaggacacatactcacccgtagctaagcttacgactgtcatactcattattgctttggcatccattcaccnttggnttat |
311 |
Q |
| |
|
| ||||| ||||| | |||| || ||||||||||| ||||| |||||||| ||||||| ||||||||| || || ||||| ||||| | |||| |||| |
|
|
| T |
37737935 |
aaattgagggtttagactactttgatacatactcacctgtagcaaagcttacaactgtcagactcattatagcattagcatctattcatcattggtttat |
37737836 |
T |
|
| Q |
312 |
ccatcaa---tatgncaataatgcttttcttcatggcgacttgcaagaaaatgtgtacatgtnncttcctccaggtgttaaaacatccnaaccaaatcaa |
408 |
Q |
| |
|
|| ||| ||| ||||||||||||||||||||| || || |||||||||||||||||| || || |||||||| ||| | || |||||||||| |
|
|
| T |
37737835 |
tcaccaacttgatgtcaataatgcttttcttcatggggagttacaagaaaatgtgtacatgcaactcccaccaggtgtcaaatcctctaaaccaaatcag |
37737736 |
T |
|
| Q |
409 |
gtttgcaaactgattaaatctctctatggattaaagcaagctagcaganagtggtatgagaagctcacttcattacttgtggctcanggtttcaagcang |
508 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||||||||||| |||| |||||||||| || | || || |||||||||||||| ||||||||||| | |
|
|
| T |
37737735 |
gtatgcaaactgattaaatccctctatggattaaagcaagcaagcatgaagtggtatgaaaaattgacatctttacttgtggctcaaggtttcaagcaag |
37737636 |
T |
|
| Q |
509 |
caaattc |
515 |
Q |
| |
|
| ||||| |
|
|
| T |
37737635 |
ctaattc |
37737629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 16 - 449
Target Start/End: Original strand, 26214519 - 26214954
Alignment:
| Q |
16 |
gctagaaaatttgattgtttgaataaagccatggagaccgaacttacngctcttgaacaanctggtacttaaaaacttgttgatttacctccaaacatcn |
115 |
Q |
| |
|
||||| ||||||||||||| |||||| ||||||||||| |||||||| ||| ||| |||| |||| ||||| ||| |||||||| |||||||||| || |
|
|
| T |
26214519 |
gctagtaaatttgattgttggaataaggccatggagactgaacttactgctattgtacaaactggaacttagaaaattgttgatctacctccaaatgtca |
26214618 |
T |
|
| Q |
116 |
naccaataggctgcatatgggtttacaagattaaacatcatgcngatggttccntanaaagattcaaagcacgtttggttgctaagggatacnatcagat |
215 |
Q |
| |
|
|| || |||||||||||||| || |||||||||||||||| ||||| ||| || || | || |||||||| || |||| ||||| ||| | ||||| |
|
|
| T |
26214619 |
aacatattggctgcatatgggtatataagattaaacatcatgttgatggatccataaaatggtttaaagcacgcttatttgcaaagggttacaaccagat |
26214718 |
T |
|
| Q |
216 |
tgaaggtttgaattactaggacacatactcacccgtagctaagcttacgactgtcatactcattattgctttggcatccattcaccnttggnttatccat |
315 |
Q |
| |
|
|||| || ||||||| |||||||||||||| || |||| |||||| || || | ||| |||||||||| ||||| ||||| | ||| | || || |
|
|
| T |
26214719 |
ataagg-ttaaattactttgacacatactcacctgttgctatgcttactacagtgagacttgttattgctttagcatcaattcatcattgattcatacac |
26214817 |
T |
|
| Q |
316 |
caa---tatgncaataatgcttttcttcatggcgacttgcaagaaaatgtgtacatgtnncttcctccaggtgttaaaacatccnaaccaaatcaagttt |
412 |
Q |
| |
|
||| ||| || ||||||||||| ||||| || |||||||||||| | |||||| | || || ||| | | ||||| |||| |||||||||| |
|
|
| T |
26214818 |
caacttgatgttaacaatgcttttctgcatggtgaattgcaagaaaatttctacatgcagttaccacctggtatcactacatctaaacctaatcaagttt |
26214917 |
T |
|
| Q |
413 |
gcaaactgattaaatctctctatggattaaagcaagc |
449 |
Q |
| |
|
| ||| || | ||||| ||||||||||| |||||||| |
|
|
| T |
26214918 |
gtaaattggtaaaatccctctatggattgaagcaagc |
26214954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 16 - 197
Target Start/End: Original strand, 6531678 - 6531858
Alignment:
| Q |
16 |
gctagaaaatttgattgtttgaataaagccatggagaccgaacttacngctcttgaacaanctggtacttaaaaacttgttgatttacctccaaacatcn |
115 |
Q |
| |
|
||||| |||||||| |||| ||| |||||||||||||| |||||| | ||||||| |||| |||| || | ||||||||||| |||||||| |||| | |
|
|
| T |
6531678 |
gctagtaaatttgactgttggaagaaagccatggagactgaacttgctgctcttgtacaaactggaacatggaaacttgttgacttacctcccaacacca |
6531777 |
T |
|
| Q |
116 |
naccaataggctgcatatgggtttacaagattaaacatcatgcngatggttccntanaaagattcaaagcacgtttggttgc |
197 |
Q |
| |
|
|||||| || |||||||||||||| |||||| | |||||||| ||||| ||| || |||| |||||||||||||| ||||| |
|
|
| T |
6531778 |
caccaattggatgcatatgggtttataagatt-agcatcatgcagatggatccatagaaaggttcaaagcacgtttagttgc |
6531858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 8 - 137
Target Start/End: Original strand, 25126277 - 25126406
Alignment:
| Q |
8 |
atgttgaggctagaaaatttgattgtttgaataaagccatggagaccgaacttacngctcttgaacaanctggtacttaaaaacttgttgatttacctcc |
107 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||| || | |||| | | ||||||||||| | | ||||| ||||||||||| |||||||| |
|
|
| T |
25126277 |
atgttgaggctagtaaatttgattgttggaataaagccatgaagtctgaacatgcttctcttgaacaaacaaggacttagaaacttgttgacttacctcc |
25126376 |
T |
|
| Q |
108 |
aaacatcnnaccaataggctgcatatgggt |
137 |
Q |
| |
|
||||||| ||||||||||| || |||||| |
|
|
| T |
25126377 |
aaacatcaaaccaataggctccagatgggt |
25126406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 398 - 476
Target Start/End: Original strand, 14456937 - 14457015
Alignment:
| Q |
398 |
aaccaaatcaagtttgcaaactgattaaatctctctatggattaaagcaagctagcaganagtggtatgagaagctcac |
476 |
Q |
| |
|
||||||| ||||||||||| || | |||| ||| ||||| | ||||||||||||||| | ||||||||||||||||| |
|
|
| T |
14456937 |
aaccaaaccaagtttgcaagcttctgaaatttctttatggcctcaagcaagctagcagaaaatggtatgagaagctcac |
14457015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 398 - 471
Target Start/End: Complemental strand, 9795995 - 9795922
Alignment:
| Q |
398 |
aaccaaatcaagtttgcaaactgattaaatctctctatggattaaagcaagctagcaganagtggtatgagaag |
471 |
Q |
| |
|
||||||||||||||||||| || | |||||||| ||||| || || |||||||| ||| | |||||||||||| |
|
|
| T |
9795995 |
aaccaaatcaagtttgcaagctactgaaatctctatatggtttgaaacaagctagtagaaaatggtatgagaag |
9795922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 8 - 613
Target Start/End: Complemental strand, 18551895 - 18551287
Alignment:
| Q |
8 |
atgttgaggctagaaaatttgattgtttgaataaagccatggagaccgaacttacngctcttgaacaanctggtacttaaaaacttgttgatttacctcc |
107 |
Q |
| |
|
||||||||||||| || |||||||||| ||||||||||||||| || ||||||| |||||||||||| ||||||||| |||||||||| ||||||||| |
|
|
| T |
18551895 |
atgttgaggctagcaagtttgattgttggaataaagccatggacactgaacttaaagctcttgaacaaactggtacttggaaacttgttggtttacctcc |
18551796 |
T |
|
| Q |
108 |
aaacatcnnaccaataggctgcatatgggtttacaagattaaacatcatgcngatggttccntanaaagattcaaagcacgtttggttgctaagggatac |
207 |
Q |
| |
|
||||||| || ||||||||||| ||||| ||||||||||||||||||||| ||||||||| || |||||||||||||| ||||||||||||||||||| |
|
|
| T |
18551795 |
aaacatcaaactaataggctgcagatgggattacaagattaaacatcatgcagatggttccatagaaagattcaaagcatgtttggttgctaagggatat |
18551696 |
T |
|
| Q |
208 |
natcagattgaaggtttgaattactaggacacatactcacccgtagctaagcttacgactgtcatactcattattgctttggcatccattcaccnttggn |
307 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| ||||| ||||||||| ||| ||||||| ||||||||||||||||||||| |||||| |||| |
|
|
| T |
18551695 |
aatcagattgaaggtttctcttactttgacacatattcacctgtagctaag-ataccactgtcagactcattattgctttggcatctattcacaattggt |
18551597 |
T |
|
| Q |
308 |
ttatccatcaa---tatgncaataatgcttttcttcatggcgacttgcaagaaaatgtgtacatgtnncttcctccaggtgttaaaacatccnaaccaaa |
404 |
Q |
| |
|
|||| |||||| ||| |||||||||||| |||||||| || ||||||||||||||||||||| |||||||||||||||||| ||||| ||||||| |
|
|
| T |
18551596 |
ttattcatcaacttgatgtcaataatgctttccttcatggtgaattgcaagaaaatgtgtacatgcaacttcctccaggtgttaaatcatccaaaccaaa |
18551497 |
T |
|
| Q |
405 |
tcaagtttgcaaactgattaaatctctctatggattaaagcaagctagcaganagtggtatgagaagctcacttcattacttgtggctcanggtttcaag |
504 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||| ||||||||| ||||||| ||||||||| |
|
|
| T |
18551496 |
tcaagtttgtaaactgattaaatctctctatggattaaagcaagctagcagaaagtggcatgagatgctcacctcattacttatggctcaaggtttcaag |
18551397 |
T |
|
| Q |
505 |
cangcaaattcnnatcactctctattcac-naattttcatcttcttcatacacnatactgcttgccnatggaganaaaatcatnctagcggtttattcnc |
603 |
Q |
| |
|
|| | |||||| |||| ||||| ||||| ||| ||||||||||||| ||| ||| | |||| | ||| ||| | ||||| ||||| | |||| | |
|
|
| T |
18551396 |
caagaaaattcagatcattctctcttcacaaaatcctcatcttcttcattcaccataattcttgtctatgtagatgatatcatcctagcaggaaattcac |
18551297 |
T |
|
| Q |
604 |
tttctgaatt |
613 |
Q |
| |
|
|||||||||| |
|
|
| T |
18551296 |
tttctgaatt |
18551287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 8 - 533
Target Start/End: Complemental strand, 19814030 - 19813502
Alignment:
| Q |
8 |
atgttgaggctagaaaatttgattgtttgaataaagccatggagaccgaacttacngctcttgaacaanctggtacttaaaaacttgttgatttacctcc |
107 |
Q |
| |
|
||||||||||||| || |||||||||| ||||||||| |||||||| || ||||| ||||||||||| || |||||| ||||||||||| |||||||| |
|
|
| T |
19814030 |
atgttgaggctagcaagtttgattgttggaataaagctatggagactgagcttacaactcttgaacaaactagtacttggaaacttgttgacttacctcc |
19813931 |
T |
|
| Q |
108 |
aaacatcnnaccaataggctgcatatgggtttacaagattaaacatcatgcngatggttccntanaaagattcaaagcacgtttggttgctaagggatac |
207 |
Q |
| |
|
||||||| ||||||||||| || ||||||||||||||||||||||||||| ||||| ||| | ||||||||||||||||||| ||| |||||||||| |
|
|
| T |
19813930 |
aaacatcaaaccaataggctacagatgggtttacaagattaaacatcatgcagatggatccattgaaagattcaaagcacgtttagtttctaagggatat |
19813831 |
T |
|
| Q |
208 |
natcagattgaaggtttgaattactaggacacatactcacccgtagctaagcttacgactgtcatactcattattgctttggcatccattcaccnttggn |
307 |
Q |
| |
|
|||||||||| |||||| |||| | |||||||| ||||| |||||||| ||||| ||||||| |||||||||||||||||| |||||| | | |||| |
|
|
| T |
19813830 |
aatcagattgagggtttggattattttgacacatattcacctgtagctaaacttacaactgtcagactcattattgctttggcctccattaatcattggt |
19813731 |
T |
|
| Q |
308 |
ttatccatcaa---tatgncaataatgcttttcttcatggcgacttgcaagaaaatgtgtacatgtnncttcctccaggtgttaaaacatccnaaccaaa |
404 |
Q |
| |
|
| || || ||| ||| |||||||||||| |||||||| || |||||||| |||||||| ||| |||||||||||||||||||| ||| ||||||| |
|
|
| T |
19813730 |
tcattcaccaacttgatgtcaataatgctttccttcatggtgaattgcaagagaatgtgtatatgcaacttcctccaggtgttaaaacctccaaaccaaa |
19813631 |
T |
|
| Q |
405 |
tcaagtttgcaaactgattaaatctctctatggattaaagcaagctagcaganagtggtatgagaagctcacttcattacttgtggctcanggtttcaag |
504 |
Q |
| |
|
||||||||| ||||| || ||||||||||||||||| ||||||||||||||| |||||||||| ||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
19813630 |
tcaagtttgtaaactaataaaatctctctatggattgaagcaagctagcagaaagtggtatgaaaagcttacttcattacttgtggctcaaggtttcaag |
19813531 |
T |
|
| Q |
505 |
cangcaaattcnnatcactctctattcac |
533 |
Q |
| |
|
|| ||||||| |||| || |||||||| |
|
|
| T |
19813530 |
cagacaaattctaatcattccctattcac |
19813502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 12 - 515
Target Start/End: Original strand, 3004309 - 3004793
Alignment:
| Q |
12 |
tgaggctagaaaatttgattgtttgaataaagccatggagaccgaacttacngctcttgaacaanctggtacttaaaaacttgttgatttacctccaaac |
111 |
Q |
| |
|
|||||| || || ||||| |||| ||| || ||||||||||| |||||| | |||||||||||| |||||||| ||| | |||||||||||||| ||| |
|
|
| T |
3004309 |
tgaggccagtaagtttgactgttggaacaaggccatggagactgaacttgctgctcttgaacaaattggtacttggaaattggttgatttacctcctaac |
3004408 |
T |
|
| Q |
112 |
atcnnaccaataggctgcatatgggtttacaagattaaacatcatgcngatggttccntanaaagattcaaagcacgtttggttgctaagggatacnatc |
211 |
Q |
| |
|
||| |||||||||||||| ||||||||| ||||| ||||||||||| || |||||||| ||||||||||||||| ||| |
|
|
| T |
3004409 |
atcaaaccaataggctgcagatgggtttataagatcaaacatcatgcaga----------------------gcacgtttagttgctaagggatacaatc |
3004486 |
T |
|
| Q |
212 |
agattgaaggtttgaattactaggacacatactcacccgtagctaagcttacgactgtcatactcattattgctttggcatccattcaccnttggnttat |
311 |
Q |
| |
|
| ||||| ||||| | |||| || ||||||||||| ||||| |||||||| ||||||| ||||||||| || || ||||| ||||| | |||| |||| |
|
|
| T |
3004487 |
aaattgagggtttagactactttgatacatactcacctgtagcaaagcttacaactgtcagactcattatagcattagcatctattcatcattggtttat |
3004586 |
T |
|
| Q |
312 |
ccatcaat---atgncaataatgcttttcttcatggcgacttgcaagaaaatgtgtacatgtnncttcctccaggtgttaaaacatccnaaccaaatcaa |
408 |
Q |
| |
|
|| ||| ||| ||||||||||||||||||||| || || |||||||||||||||||| || || |||||||| ||| | || |||||||||| |
|
|
| T |
3004587 |
tcaccaacttgatgtcaataatgcttttcttcatggggagttacaagaaaatgtgtacatgcaactcccaccaggtgtcaaatcctctaaaccaaatcag |
3004686 |
T |
|
| Q |
409 |
gtttgcaaactgattaaatctctctatggattaaagcaagctagcaganagtggtatgagaagctcacttcattacttgtggctcanggtttcaagcang |
508 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||||||||||| ||||| ||||||| || || | || || |||||||||||||| ||||||||||| | |
|
|
| T |
3004687 |
gtatgcaaactgattaaatccctctatggattaaagcaagcaagcaggaagtggtaagaaaaattgacatctttacttgtggctcaaggtttcaagcaag |
3004786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 11 - 271
Target Start/End: Original strand, 18477002 - 18477264
Alignment:
| Q |
11 |
ttgaggctagaaaatttgattgtttgaataaagccatggagaccgaacttacngctcttgaacaanctg--gtacttaaaaacttgttgatttacctcca |
108 |
Q |
| |
|
|||||||||| | |||| ||||| || ||||||||| ||||| ||||||| |||||||||||| || | |||| |||||||||||| |||||||| |
|
|
| T |
18477002 |
ttgaggctagcatgtttggttgttggattaaagccatagagactgaacttaaagctcttgaacaaactatagcacttggaaacttgttgatctacctcca |
18477101 |
T |
|
| Q |
109 |
aacatcnnaccaataggctgcatatgggtttacaagattaaacatcatgcngatggttccntanaaagattcaaagcacgtttggttgctaagggatacn |
208 |
Q |
| |
|
|||||| ||||||||| |||| ||||||||| ||||||||||||||||| ||| ||| || ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
18477102 |
aacatcaaaccaataggatgcaaatgggtttaaaagattaaacatcatgcagatttctccatagaaagactcaaagcacgtttggttgctaagggataca |
18477201 |
T |
|
| Q |
209 |
atcagattgaaggtttgaattactaggacacatactcacccgtagctaagcttacgactgtca |
271 |
Q |
| |
|
| ||||||||||| ||| |||| | |||| || |||| ||||| |||||||| ||||||| |
|
|
| T |
18477202 |
accagattgaaggattggattattttgacatctattcacttgtagccaagcttaccactgtca |
18477264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 357 - 533
Target Start/End: Original strand, 18477270 - 18477446
Alignment:
| Q |
357 |
aaatgtgtacatgtnncttcctccaggtgttaaaacatccnaaccaaatcaagtttgcaaactgattaaatctctctatggattaaagcaagctagcaga |
456 |
Q |
| |
|
||||||||||||| ||||| ||||||||| | ||| ||||||||||||||||||| || | |||||||| |||||||| |||||||| |||||| |
|
|
| T |
18477270 |
aaatgtgtacatgcagcttccattaggtgttaactcttccaaaccaaatcaagtttgcaagctagtcaaatctctatatggatttaagcaagcaagcaga |
18477369 |
T |
|
| Q |
457 |
nagtggtatgagaagctcacttcattacttgtggctcanggtttcaagcangcaaattcnnatcactctctattcac |
533 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||| |||||||| || || ||||| |||| | ||||||||| |
|
|
| T |
18477370 |
aagtggtatgagaagctcacttctttacttgtggttcaaggtttcaatcaagctaattcatatcattttctattcac |
18477446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 174; Significance: 4e-93; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 4e-93
Query Start/End: Original strand, 12 - 515
Target Start/End: Complemental strand, 36731994 - 36731488
Alignment:
| Q |
12 |
tgaggctagaaaatttgattgtttgaataaagccatggagaccgaacttacngctcttgaacaanctggtacttaaaaacttgttgatttacctccaaac |
111 |
Q |
| |
|
||||||||| || ||||| |||| ||| || || |||||||| |||||| | |||||||||||| ||||||||| ||| | |||||||||||||| ||| |
|
|
| T |
36731994 |
tgaggctagtaagtttgactgttggaacaaggctatggagactgaacttgctgctcttgaacaaactggtacttggaaattggttgatttacctcctaac |
36731895 |
T |
|
| Q |
112 |
atcnnaccaataggctgcatatgggtttacaagattaaacatcatgcngatggttccntanaaagattcaaagcacgtttggttgctaagggatacnatc |
211 |
Q |
| |
|
||| |||||||||||||| ||||||||| ||||| ||||||||||| ||||| ||| || ||||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
36731894 |
atcaaaccaataggctgcagatgggtttataagatcaaacatcatgcagatggctccatagaaagattcaaagcacgtttagttgctaagggatacaatc |
36731795 |
T |
|
| Q |
212 |
agattgaaggtttgaattactaggacacatactcacccgtagctaagcttacgactgtcatactcattattgctttggcatccattcaccnttggnttat |
311 |
Q |
| |
|
| ||||| ||||| | |||| || ||||||||||| ||||| || ||||| ||||||| ||||||||| || || ||||| ||||| | |||| |||| |
|
|
| T |
36731794 |
aaattgagggtttagactactttgatacatactcacctgtagcaaaacttacaactgtcagactcattatagcattagcatctattcatcattggtttat |
36731695 |
T |
|
| Q |
312 |
ccatcaa---tatgncaataatgcttttcttcatggcgacttgcaagaaaatgtgtacatgtnncttcctccaggtgttaaaacatccnaaccaaatcaa |
408 |
Q |
| |
|
|| ||| ||| |||||||||||||||||||| || || ||||||||||||||| || || || ||| |||| ||| | | |||||||||| |
|
|
| T |
36731694 |
tcaccaacttgatgtcaataatgcttttcttcatgtggagttacaagaaaatgtgtacttgcaactcccaccaagtgtcaaatccgctaaaccaaatcag |
36731595 |
T |
|
| Q |
409 |
gtttgcaaactgattaaatctctctatggattaaagcaagctagcaganagtggtatgagaagctcacttcattacttgtggctcanggtttcaagcang |
508 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||| ||||||||||||||| | |||||||| || | | || |||||||||||||| ||||||||||| | |
|
|
| T |
36731594 |
gtatgcaaactgattaaatccctctatggattgaagcaagctagcagaaaatggtatgaaaaattgtcatctttacttgtggctcaaggtttcaagcaag |
36731495 |
T |
|
| Q |
509 |
caaattc |
515 |
Q |
| |
|
| ||||| |
|
|
| T |
36731494 |
ctaattc |
36731488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 15 - 515
Target Start/End: Complemental strand, 23884803 - 23884300
Alignment:
| Q |
15 |
ggctagaaaatttgattgtttgaataaagccatggagaccgaacttacngctcttgaacaanctggtacttaaaaacttgttgatttacctccaaacatc |
114 |
Q |
| |
|
|||||| || ||||| |||| ||| || ||||||||||| |||||||| | |||||||||| |||| |||| || || ||||| ||||| | |||||| |
|
|
| T |
23884803 |
ggctagtaagtttgactgttggaacaaggccatggagactgaacttactgttcttgaacaaactggcacttggaagctggttgaactaccttctaacatc |
23884704 |
T |
|
| Q |
115 |
nnaccaataggctgcatatgggtttacaagattaaacatcatgcngatggttccntanaaagattcaaagcacgtttggttgctaagggatacnatcaga |
214 |
Q |
| |
|
||||||||| |||| ||||||||| ||||| ||||| ||||| ||||| ||| || |||||||||| |||||||| ||||||||||||||| |||| | |
|
|
| T |
23884703 |
aaaccaataggttgcagatgggtttataagatcaaacaccatgcagatggctccatagaaagattcaatgcacgtttagttgctaagggatacaatcaaa |
23884604 |
T |
|
| Q |
215 |
ttgaaggtttgaattactaggacacatactcacccgtagctaagcttacgactgtcatactcattattgctttggcatccattcaccnttggnttatcca |
314 |
Q |
| |
|
|||| ||||| |||||| |||||||| ||||| ||||| |||||||| ||||| | ||||||||| ||||||||||| ||||| | |||| | || || |
|
|
| T |
23884603 |
ttgagggtttagattactttgacacatattcacctgtagcaaagcttacaactgttagactcattatagctttggcatctattcatcattggttcattca |
23884504 |
T |
|
| Q |
315 |
tcaa---tatgncaataatgcttttcttcatggcgacttgcaagaaaatgtgtacatgtnncttcctccaggtgttaaaacatccnaaccaaatcaagtt |
411 |
Q |
| |
|
||| ||| ||||||||| ||||||||||| || || |||||||||||||||||| ||||| ||||| || ||| | || |||||||||| || |
|
|
| T |
23884503 |
ccaaattgatgtcaataatgcatttcttcatggtgagttacaagaaaatgtgtacatgaaacttccaccaggcgtcaaatcctctaaaccaaatcaggtc |
23884404 |
T |
|
| Q |
412 |
tgcaaactgattaaatctctctatggattaaagcaagctagcaganagtggtatgagaagctcacttcattacttgtggctcanggtttcaagcangcaa |
511 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||| |||||||||| ||| | |||| |||||||||||||| || |||||||| || | |
|
|
| T |
23884403 |
tgcaaactgattaaatccctctatggattaaagcaagcaagcaggaagtggtatgaaaagttgacttttttacttgtggctcaaggcttcaagcaagcta |
23884304 |
T |
|
| Q |
512 |
attc |
515 |
Q |
| |
|
|||| |
|
|
| T |
23884303 |
attc |
23884300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 221
Target Start/End: Complemental strand, 16990020 - 16989920
Alignment:
| Q |
121 |
ataggctgcatatgggtttacaagattaaacatcatgcngatggttccntanaaagattcaaagcacgtttggttgctaagggatacnatcagattgaag |
220 |
Q |
| |
|
||||| |||| ||||||||| || | |||||| |||| ||||| || | | |||| |||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
16990020 |
atagggtgcagatgggtttataaagtgaaacataatgcagatggctctattgagagatacaaagcacgtttagttgctaagggatataatcagattgaag |
16989921 |
T |
|
| Q |
221 |
g |
221 |
Q |
| |
|
| |
|
|
| T |
16989920 |
g |
16989920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 328 - 471
Target Start/End: Original strand, 15450003 - 15450146
Alignment:
| Q |
328 |
aatgcttttcttcatggcgacttgcaagaaaatgtgtacatgtnncttcctccaggtgttaaaacatccnaaccaaatcaagtttgcaaactgattaaat |
427 |
Q |
| |
|
|||||||| |||||||| || ||||||| |||| |||||| ||||| ||||||||| | |||| ||||||||||| |||| || |||| |||| |
|
|
| T |
15450003 |
aatgctttccttcatggtgatctgcaagaggatgtatacatgactcttccaccaggtgtttcatcatctaaaccaaatcaattttgtaagttgatgaaat |
15450102 |
T |
|
| Q |
428 |
ctctctatggattaaagcaagctagcaganagtggtatgagaag |
471 |
Q |
| |
|
|||| |||| | || |||||||||||| | |||||||||||| |
|
|
| T |
15450103 |
ctctatatgacctcaaacaagctagcagaaaatggtatgagaag |
15450146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 401 - 467
Target Start/End: Complemental strand, 26465691 - 26465625
Alignment:
| Q |
401 |
caaatcaagtttgcaaactgattaaatctctctatggattaaagcaagctagcaganagtggtatga |
467 |
Q |
| |
|
||||||||||||||||||| || || ||||| ||||| | |||||||| |||||| |||||||||| |
|
|
| T |
26465691 |
caaatcaagtttgcaaacttatcaagtctctttatggtcttaagcaagcaagcagaaagtggtatga |
26465625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 394 - 470
Target Start/End: Original strand, 23958515 - 23958591
Alignment:
| Q |
394 |
tccnaaccaaatcaagtttgcaaactgattaaatctctctatggattaaagcaagctagcaganagtggtatgagaa |
470 |
Q |
| |
|
||| ||||||||||||| || ||||| | ||||| |||||||| |||||||||||||||| ||| ||||||||| |
|
|
| T |
23958515 |
tccaaaccaaatcaagtctgtaaacttctcaaatcactctatggtctaaagcaagctagcaggaagttgtatgagaa |
23958591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 398 - 470
Target Start/End: Complemental strand, 9845863 - 9845791
Alignment:
| Q |
398 |
aaccaaatcaagtttgcaaactgattaaatctctctatggattaaagcaagctagcaganagtggtatgagaa |
470 |
Q |
| |
|
|||| ||||||||||| ||||| |||| || ||||||||| | || |||||||||||| | ||||||||||| |
|
|
| T |
9845863 |
aacctaatcaagtttgtaaacttgttaagtcactctatggactcaaacaagctagcagacaatggtatgagaa |
9845791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 170; Significance: 9e-91; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 9e-91
Query Start/End: Original strand, 12 - 515
Target Start/End: Original strand, 23681610 - 23682116
Alignment:
| Q |
12 |
tgaggctagaaaatttgattgtttgaataaagccatggagaccgaacttacngctcttgaacaanctggtacttaaaaacttgttgatttacctccaaac |
111 |
Q |
| |
|
||||||||| || ||||| |||| ||| || ||||||||||| |||||| | |||||||||||| ||||||||| ||| | |||||| ||||||| ||| |
|
|
| T |
23681610 |
tgaggctagtaagtttgactgttggaacaaggccatggagactgaacttgctgctcttgaacaaactggtacttggaaattggttgatctacctcctaac |
23681709 |
T |
|
| Q |
112 |
atcnnaccaataggctgcatatgggtttacaagattaaacatcatgcngatggttccntanaaagattcaaagcacgtttggttgctaagggatacnatc |
211 |
Q |
| |
|
||| |||||||||||||| ||||||||| ||||| ||||||||||| ||||| ||| || ||||||||||||||||||| ||||||||||| || ||| |
|
|
| T |
23681710 |
atcaaaccaataggctgcagatgggtttataagatcaaacatcatgcagatggctccatagaaagattcaaagcacgtttagttgctaagggctataatc |
23681809 |
T |
|
| Q |
212 |
agattgaaggtttgaattactaggacacatactcacccgtagctaagcttacgactgtcatactcattattgctttggcatccattcaccnttggnttat |
311 |
Q |
| |
|
| ||||| ||||| | |||| || || |||||||| ||||| |||||||| ||||||| ||||||||| | || ||||| ||||| | |||| |||| |
|
|
| T |
23681810 |
aaattgagggtttagactactttgatacctactcacctgtagcaaagcttacaactgtcagactcattatatcattagcatctattcatcattggtttat |
23681909 |
T |
|
| Q |
312 |
ccatcaa---tatgncaataatgcttttcttcatggcgacttgcaagaaaatgtgtacatgtnncttcctccaggtgttaaaacatccnaaccaaatcaa |
408 |
Q |
| |
|
|| ||| ||| ||||||||||||||||||||| || || |||||||||||||||||| || || |||||||| ||| | | |||||||||| |
|
|
| T |
23681910 |
tcaccaacttgatgtcaataatgcttttcttcatggggagttacaagaaaatgtgtacatgcaactcccaccaggtgtcaaatcctttaaaccaaatcat |
23682009 |
T |
|
| Q |
409 |
gtttgcaaactgattaaatctctctatggattaaagcaagctagcaganagtggtatgagaagctcacttcattacttgtggctcanggtttcaagcang |
508 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||||||||||| |||| |||||||||| | | || || |||||||||||||| ||||||||||| | |
|
|
| T |
23682010 |
gtatgcaaactgattaaatccctctatggattaaagcaagcaagcatgaagtggtatgaaatattgacatctttacttgtggctcaaggtttcaagcaag |
23682109 |
T |
|
| Q |
509 |
caaattc |
515 |
Q |
| |
|
| ||||| |
|
|
| T |
23682110 |
ctaattc |
23682116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 394 - 479
Target Start/End: Complemental strand, 21807994 - 21807909
Alignment:
| Q |
394 |
tccnaaccaaatcaagtttgcaaactgattaaatctctctatggattaaagcaagctagcaganagtggtatgagaagctcacttc |
479 |
Q |
| |
|
||| |||||||||||||||||||||| |||||||| || ||||| | || ||||| |||||| |||||||||||||||||||||| |
|
|
| T |
21807994 |
tccaaaccaaatcaagtttgcaaactcattaaatccctatatggtcttaaacaagcaagcagaaagtggtatgagaagctcacttc |
21807909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 280 - 477
Target Start/End: Complemental strand, 4941897 - 4941697
Alignment:
| Q |
280 |
attgctttggcatccattcaccnttggnttatccatcaat---atgncaataatgcttttcttcatggcgacttgcaagaaaatgtgtacatgtnncttc |
376 |
Q |
| |
|
|||||||||||||| ||||||| |||| |||| |||||| ||| || ||||| ||||||||||| || |||||||| |||||||| || | | |
|
|
| T |
4941897 |
attgctttggcatctattcaccattggtttatacatcaacttgatgtaaacaatgcatttcttcatggtgaattgcaagaggatgtgtacgtgcaattac |
4941798 |
T |
|
| Q |
377 |
ctccaggtgttaaaacatccnaaccaaatcaagtttgcaaactgattaaatctctctatggattaaagcaagctagcaganagtggtatgagaagctcac |
476 |
Q |
| |
|
|| |||| ||||| || |||| ||||||||||||||| ||||||||||||||||||| |||||||| || || ||| | |||||||| | |||||| |
|
|
| T |
4941797 |
cttcaggaattaaagattctaaacctaatcaagtttgcaaattgattaaatctctctatggtttaaagcaggccagtagaaaatggtatgaaaggctcac |
4941698 |
T |
|
| Q |
477 |
t |
477 |
Q |
| |
|
| |
|
|
| T |
4941697 |
t |
4941697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 280 - 477
Target Start/End: Complemental strand, 5026977 - 5026777
Alignment:
| Q |
280 |
attgctttggcatccattcaccnttggnttatccatcaat---atgncaataatgcttttcttcatggcgacttgcaagaaaatgtgtacatgtnncttc |
376 |
Q |
| |
|
|||||||||||||| ||||||| |||| |||| |||||| ||| || ||||| ||||||||||| || |||||||| |||||||| || | | |
|
|
| T |
5026977 |
attgctttggcatctattcaccattggtttatacatcaacttgatgtaaacaatgcatttcttcatggtgaattgcaagaggatgtgtacgtgcaattac |
5026878 |
T |
|
| Q |
377 |
ctccaggtgttaaaacatccnaaccaaatcaagtttgcaaactgattaaatctctctatggattaaagcaagctagcaganagtggtatgagaagctcac |
476 |
Q |
| |
|
|| |||| ||||| || |||| ||||||||||||||| ||||||||||||||||||| |||||||| || || ||| | |||||||| | |||||| |
|
|
| T |
5026877 |
cttcaggaattaaagattctaaacctaatcaagtttgcaaattgattaaatctctctatggtttaaagcaggccagtagaaaatggtatgaaaggctcac |
5026778 |
T |
|
| Q |
477 |
t |
477 |
Q |
| |
|
| |
|
|
| T |
5026777 |
t |
5026777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 221
Target Start/End: Complemental strand, 20482855 - 20482755
Alignment:
| Q |
121 |
ataggctgcatatgggtttacaagattaaacatcatgcngatggttccntanaaagattcaaagcacgtttggttgctaagggatacnatcagattgaag |
220 |
Q |
| |
|
||||| |||||||| ||||| || | |||||| |||| ||||| || | | |||| |||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
20482855 |
atagggtgcatatgtgtttataaagtgaaacataatgcagatggctctattgagagatacaaagcacgtttagttgctaagggatataatcagattgaag |
20482756 |
T |
|
| Q |
221 |
g |
221 |
Q |
| |
|
| |
|
|
| T |
20482755 |
g |
20482755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 28018386 - 28018432
Alignment:
| Q |
175 |
agattcaaagcacgtttggttgctaagggatacnatcagattgaagg |
221 |
Q |
| |
|
|||| |||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
28018386 |
agatacaaagcacgtttagttgctaagggatataatcagattgaagg |
28018432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 403 - 480
Target Start/End: Complemental strand, 28155349 - 28155272
Alignment:
| Q |
403 |
aatcaagtttgcaaactgattaaatctctctatggattaaagcaagctagcaganagtggtatgagaagctcacttca |
480 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||| | |||||| ||||||| | |||| |||||||||||||||| |
|
|
| T |
28155349 |
aatcaagtttgtaaacttcataaatctctctatggtctcaagcaacctagcaggaaatggtttgagaagctcacttca |
28155272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 394 - 479
Target Start/End: Original strand, 16987960 - 16988045
Alignment:
| Q |
394 |
tccnaaccaaatcaagtttgcaaactgattaaatctctctatggattaaagcaagctagcaganagtggtatgagaagctcacttc |
479 |
Q |
| |
|
||| |||||||||||||||||||||| |||||||| |||||||| | || ||||| |||||| |||||||||||||||||||||| |
|
|
| T |
16987960 |
tccaaaccaaatcaagtttgcaaactcattaaatccctctatggtcttaaacaagcaagcagaaagtggtatgagaagctcacttc |
16988045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 479
Target Start/End: Original strand, 35088553 - 35088629
Alignment:
| Q |
403 |
aatcaagtttgcaaactgattaaatctctctatggattaaagcaagctagcaganagtggtatgagaagctcacttc |
479 |
Q |
| |
|
||||| ||||||||||| | || ||||||||||||||||| |||||||| || ||||||||||||| |||||||| |
|
|
| T |
35088553 |
aatcaggtttgcaaacttaagaagtctctctatggattaaaacaagctagtaggaagtggtatgagaaactcacttc |
35088629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 232
Target Start/End: Original strand, 14039971 - 14040028
Alignment:
| Q |
175 |
agattcaaagcacgtttggttgctaagggatacnatcagattgaaggtttgaattact |
232 |
Q |
| |
|
|||| |||||||| |||||||||||||||||| ||||||||||||| ||| |||||| |
|
|
| T |
14039971 |
agatacaaagcacttttggttgctaagggatataatcagattgaaggcttggattact |
14040028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 433 - 473
Target Start/End: Original strand, 2006043 - 2006083
Alignment:
| Q |
433 |
tatggattaaagcaagctagcaganagtggtatgagaagct |
473 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||| ||||| |
|
|
| T |
2006043 |
tatggtttaaagcaagctagcagaaagtggtatgaaaagct |
2006083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 404 - 476
Target Start/End: Original strand, 22644747 - 22644819
Alignment:
| Q |
404 |
atcaagtttgcaaactgattaaatctctctatggattaaagcaagctagcaganagtggtatgagaagctcac |
476 |
Q |
| |
|
|||||||||||||| ||| ||||| || ||||| || ||||| || ||||| ||||||||||||||||||| |
|
|
| T |
22644747 |
atcaagtttgcaaattgaagaaatccctttatggtttgaagcaggcaagcaggcagtggtatgagaagctcac |
22644819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 8 - 162
Target Start/End: Complemental strand, 23375866 - 23375712
Alignment:
| Q |
8 |
atgttgaggctagaaaatttgattgtttgaataaagccatggagaccgaacttacngctcttgaacaanctggtacttaaaaacttgttgatttacctcc |
107 |
Q |
| |
|
||||||||||||| |||||||| |||| |||||| |||||| |||| ||||||| ||||||| |||| || | |||| ||| |||||||||||||||| |
|
|
| T |
23375866 |
atgttgaggctagtaaatttgactgttggaataaggccatgaagactgaacttattgctcttgtacaaactagaacttggaaaattgttgatttacctcc |
23375767 |
T |
|
| Q |
108 |
aaacatcnnaccaataggctgcatatgggtttacaagattaaacatcatgcngat |
162 |
Q |
| |
|
|| || ||| || ||||||| ||||| || ||||||||||||||||| ||| |
|
|
| T |
23375766 |
caatataaaacctattggctgcagatgggaatataagattaaacatcatgcagat |
23375712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 398 - 476
Target Start/End: Complemental strand, 4644927 - 4644849
Alignment:
| Q |
398 |
aaccaaatcaagtttgcaaactgattaaatctctctatggattaaagcaagctagcaganagtggtatgagaagctcac |
476 |
Q |
| |
|
|||||||||| ||||||||||| | ||||| || |||||||| || ||||| || ||| ||||||||||||||||||| |
|
|
| T |
4644927 |
aaccaaatcaggtttgcaaactagtaaaatcactgtatggattgaaacaagcaagtagaaagtggtatgagaagctcac |
4644849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 398 - 479
Target Start/End: Original strand, 31961610 - 31961691
Alignment:
| Q |
398 |
aaccaaatcaagtttgcaaactgattaaatctctctatggattaaagcaagctagcaganagtggtatgagaagctcacttc |
479 |
Q |
| |
|
|||| |||||||| |||||||| || |||||||| ||||| | ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
31961610 |
aacccaatcaagtctgcaaactcatgaaatctctttatggtcttaagcaagctagcagaaagtggtatgagaagctcacttc |
31961691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 394 - 467
Target Start/End: Original strand, 28561298 - 28561371
Alignment:
| Q |
394 |
tccnaaccaaatcaagtttgcaaactgattaaatctctctatggattaaagcaagctagcaganagtggtatga |
467 |
Q |
| |
|
||| |||| ||||||||||||||||| || |||||||| |||||| |||||||||||||||| |||||||||| |
|
|
| T |
28561298 |
tccaaacctaatcaagtttgcaaactcatgaaatctctttatggaccaaagcaagctagcagaaagtggtatga |
28561371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 263
Target Start/End: Original strand, 31273042 - 31273293
Alignment:
| Q |
12 |
tgaggctagaaaatttgattgtttgaataaagccatggagaccgaacttacngctcttgaacaanctggtacttaaaaacttgttgatttacctccaaac |
111 |
Q |
| |
|
|||| |||| ||||||||||| | |||||| | ||||||||| |||||||| |||||||||||| || | |||| ||| |||||||| |||| || |
|
|
| T |
31273042 |
tgagcctagtaaatttgattgatggaataaggtcatggagactgaacttactgctcttgaacaaactcgaacttggaaagttgttgatctaccctttaat |
31273141 |
T |
|
| Q |
112 |
atcnnaccaataggctgcatatgggtttacaagattaaacatcatgcngatggttccntanaaagattcaaagcacgtttggttgctaagggatacnatc |
211 |
Q |
| |
|
||| ||| || || |||| | |||| || ||||||| ||||||||| ||| | ||| || |||| || ||||| || || ||||| ||||| || ||| |
|
|
| T |
31273142 |
atcaaacctattggttgcagaagggtatataagattagacatcatgcagattgatccatagaaaggtttaaagcccgcttagttgcaaagggttaaaatc |
31273241 |
T |
|
| Q |
212 |
agattgaaggtttgaattactaggacacatactcacccgtagctaagcttac |
263 |
Q |
| |
|
| || ||||||| |||||| |||||||||||||| || |||||| |||| |
|
|
| T |
31273242 |
atatataaggtttagattactttgacacatactcacctgttgctaagtttac |
31273293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 225
Target Start/End: Original strand, 34067897 - 34067980
Alignment:
| Q |
142 |
aagattaaacatcatgcngatggttccntanaaagattcaaagcacgtttggttgctaagggatacnatcagattgaaggtttg |
225 |
Q |
| |
|
||||| ||| ||||||| ||||| ||| || |||||| |||||||||||| |||||||| || ||| ||||||| || |||||| |
|
|
| T |
34067897 |
aagatcaaatatcatgcagatgggtccatagaaagatacaaagcacgtttagttgctaaaggttacaatcagatagagggtttg |
34067980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 6343357 - 6343403
Alignment:
| Q |
175 |
agattcaaagcacgtttggttgctaagggatacnatcagattgaagg |
221 |
Q |
| |
|
|||| |||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
6343357 |
agatacaaagcacgtttagttgctaagggatataatcagattgaagg |
6343403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1416 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold1416
Description:
Target: scaffold1416; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 369 - 328
Alignment:
| Q |
180 |
caaagcacgtttggttgctaagggatacnatcagattgaagg |
221 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
369 |
caaagcacgtttagttgctaagggatataatcagattgaagg |
328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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