View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0130Eco9 (Length: 281)
Name: NF0130Eco9
Description: NF0130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0130Eco9
Alignment Details
Target: chr7 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 5 - 201
Target Start/End: Original strand, 362695 - 362891
Alignment:
Q
5
acacacaccncnacaaacctaatcactattactgtctaaaataaactgaacatagatattgatggngtactttcaatggtgannnncatcctatcaccaa
104
Q
||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||| || |||||||||||
T
362695
acacacaccacaacaaacctaatcactattactgtataaaataaactgaacatagatattgatggagtactttcaatgatgaaaaacaacctatcaccaa
362794
T
Q
105
ttttgacattcctctcctaaatgaacttgcaccaaccaccaactagatatctcttacgtggaatcatgctctttggaaccaacactgttcacaaagc
201
Q
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
T
362795
ttttgacattcctctcctaaataaacttgcaccaaccaccaactagatatctcttatgtggaatcatgctctttggaacctacactgttcacaaagc
362891
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 24 - 190
Target Start/End: Complemental strand, 41024307 - 41024141
Alignment:
Q
24
taatcactattactgtctaaaataaactgaacatagatattgatggngtactttcaatggtgannnncatcctatcaccaattttgacattcctctccta
123
Q
|||||||||| |||||||||||||||| ||||||| |||||| ||| |||||||||||||||| || |||||||||||||||| ||||||| ||||
T
41024307
taatcactatcactgtctaaaataaaccgaacataaatattgttggagtactttcaatggtgaaaaacaacctatcaccaattttggcattcctgtcctg
41024208
T
Q
124
aatgaacttgcaccaaccaccaactagatatctcttacgtggaatcatgctctttggaaccaacact
190
Q
|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
T
41024207
aatgaacttgcaccaaccactaactagatatctcttatgtggaatcatgctctttggaaccaacact
41024141
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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