View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0130_low_1 (Length: 660)
Name: NF0130_low_1
Description: NF0130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0130_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 489; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 110 - 649
Target Start/End: Original strand, 41028150 - 41028687
Alignment:
| Q |
110 |
ttaggttgtagttttgatttgaaactctgcatctgttgcaatgtctaaacaatgcaatttttccatttttgctaagtaatctgcaatgcaattgcgaata |
209 |
Q |
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| T |
41028150 |
ttaggttttagttttgatttgaaactctgcatctgttgcaatgtctaaacaatgcaatttttccatttttgctaagtaatctgcagtgcaattgcgaata |
41028249 |
T |
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| Q |
210 |
acttattctctgcgattgaatgagatgttttgaaactgaggaaagaccaactagttttttctcaatggttcccatatgttattccatctggagaatttag |
309 |
Q |
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| T |
41028250 |
acttattctctgcgattgaatgagatgttttgaaaccgaggaaagaccaactagttttttctcaatggttcccatatgttattccatctggagaatttag |
41028349 |
T |
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| Q |
310 |
aaatctaggttaagttgtcttcttgaagtaggtggagaaactagagatttcattaaagaaattaatattgaataatgctggaaaacaatcccattgcaac |
409 |
Q |
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| T |
41028350 |
aaatctaggttaagttgtcttcttgaagtaggtggagaaactagagatttcattaaagaaattaatattgaataatgctggaaaacaatcccattgcaac |
41028449 |
T |
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| Q |
410 |
aatagtgtggctctcttggcttgtgaaacagaggaaatttgtgctgatcctcctctttttgaagctttttccatgtcgcggtgacttcaaatagcacaga |
509 |
Q |
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| T |
41028450 |
aatagtgtggctctcttggcttgtgaaacagaggaaatttgtgctgatcctactctttttgaagcttttgccatgtcgcggttacttcaaatagcacgga |
41028549 |
T |
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| Q |
510 |
atcaaaagattcaaaacctgtgttttgcggccattaaccttgtcattatggactctaaagacatcatgcagctgctggtagataatcaattgaaaagtaa |
609 |
Q |
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| T |
41028550 |
atcaaaagattcaaaacctgtgttttgcggccattaaccttgtcattat--acttcaaagacatcatgcagctgctggtagataatcaattgaaaagtaa |
41028647 |
T |
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| Q |
610 |
gttgaacaatgaggcttatagttaggatttacccgtctgt |
649 |
Q |
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| T |
41028648 |
gttgaacaatgaggcttatagttaggatttacccttctgt |
41028687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 423 - 649
Target Start/End: Original strand, 41035306 - 41035530
Alignment:
| Q |
423 |
tcttggcttgtgaaacagaggaaatttgtgctgatcctcctctttttgaagctttttccatgtcgcggtgacttcaaatagcacagaatcaaaagattca |
522 |
Q |
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| T |
41035306 |
tcttagcttgtgaaacagaggaaatttgtgttgatcctactctttctgaagcttttgccatggcgcggtgacttcaaatagcaaggaatcaa--gattca |
41035403 |
T |
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| Q |
523 |
aaacctgtgttttgcggccattaaccttgtcattatggactctaaagacatcatgcagctgctggtagataatcaattgaaaagtaagttgaacaatgag |
622 |
Q |
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| T |
41035404 |
aaacctgtgttttgcagccattaaccttgttattttggactgcaaagacatcatgcagcagctgggagatattcaattgacacataagttgaataatggg |
41035503 |
T |
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| Q |
623 |
gcttatagttaggatttacccgtctgt |
649 |
Q |
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||| |||||||| | ||||| ||||| |
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| T |
41035504 |
gctcgtagttagggtctacccttctgt |
41035530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 41028110 - 41028151
Alignment:
| Q |
40 |
attcacaatattaaatcttcactgaaaccaaactttagtatt |
81 |
Q |
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| T |
41028110 |
attcacaatattgaatcttcactgaaaccaaactttagtatt |
41028151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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