View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0130_low_2 (Length: 457)

Name: NF0130_low_2
Description: NF0130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0130_low_2
NF0130_low_2
[»] chr1 (6 HSPs)
chr1 (1-339)||(34452410-34452760)
chr1 (223-322)||(23410658-23410757)
chr1 (223-312)||(37138626-37138714)
chr1 (223-338)||(5846056-5846170)
chr1 (223-274)||(22893291-22893342)
chr1 (223-281)||(9645575-9645633)
[»] chr4 (3 HSPs)
chr4 (84-291)||(34688788-34688991)
chr4 (227-309)||(52549592-52549674)
chr4 (230-329)||(46309814-46309912)
[»] chr2 (5 HSPs)
chr2 (223-328)||(8025085-8025190)
chr2 (284-335)||(25101121-25101172)
chr2 (223-311)||(5521811-5521901)
chr2 (248-329)||(36267885-36267964)
chr2 (225-277)||(14876065-14876116)
[»] scaffold0050 (1 HSPs)
scaffold0050 (227-324)||(46524-46621)
[»] chr7 (3 HSPs)
chr7 (223-274)||(40704265-40704316)
chr7 (223-325)||(28426815-28426917)
chr7 (91-141)||(25795239-25795289)
[»] chr8 (4 HSPs)
chr8 (227-309)||(1781555-1781637)
chr8 (223-309)||(1770985-1771072)
chr8 (223-302)||(2611537-2611616)
chr8 (240-311)||(3135515-3135586)
[»] chr3 (2 HSPs)
chr3 (240-313)||(1765128-1765201)
chr3 (292-337)||(27070448-27070493)
[»] chr6 (1 HSPs)
chr6 (223-329)||(2420166-2420272)


Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 34452410 - 34452760
Alignment:
Q  1 tttcttccatgaaaagtaagatggatagctagtttgaccacaaataaaaagtcatactcccttagtttcaacgtgattgtcacttttgacaataaaataa 100  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34452410 tttcttccatgaaaagtaagatggatagctaatgtgaccacaaataaaaagtcatactcccttagtttcaacgtgattgtcacttttgacaataaaataa 34452509  T
Q  101 gcttcatttaagtgttgaaataattagagtataatcaaattgactatgagtcaagacattctc------------gattcataatttgaaaatcaaatac 188  Q
     ||||||||||||||||||||| |||||||| |||||||||||| |||| |||||||||||||            |||||||||||||||||||||||||    
T  34452510 acttcatttaagtgttgaaatagttagagtacaatcaaattgacaatgaatcaagacattctcgattcataatttgattcataatttgaaaatcaaatac 34452609  T
Q  189 atgcaatcaatacacnnnnnnntttaagaaggtgaaagtacattaacaaaccaaattcttaatcctatcaaccaaactaaattctttcacatatagtcaa 288  Q
    |||| |||||||||        ||||||||||| ||||||||||||||||| ||| ||||||| ||||||| |||||||||||||||| |||||||||||    
T  34452610 atgctatcaatacatataaaaatttaagaaggtaaaagtacattaacaaactaaactcttaattctatcaagcaaactaaattctttcccatatagtcaa 34452709  T
Q  289 tggtcaaaaataataaaagatccacaatttttaattgcatcaatcttcaag 339  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  34452710 tggtcaaaaataataaaagatccacaatttttaattgcatcactcttcaag 34452760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 223 - 322
Target Start/End: Complemental strand, 23410757 - 23410658
Alignment:
Q  223 aaagtacattaacaaaccaaattcttaatcctatcaaccaaactaaattctttcacatatagtcaatggtcaaaaataataaaagatccacaatttttaa 322  Q
    ||||||||||| ||| ||||| ||||||||||| |||||||||| ||||| | |||||||   |||||||||| |||||| |||||||||| || |||||    
T  23410757 aaagtacattagcaacccaaactcttaatcctaacaaccaaactgaattcatccacatatgaccaatggtcaagaataattaaagatccacgatctttaa 23410658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 223 - 312
Target Start/End: Original strand, 37138626 - 37138714
Alignment:
Q  223 aaagtacattaacaaaccaaattcttaatcctatcaaccaaactaaattctttcacatatagtcaatggtcaaaaataataaaagatcca 312  Q
    |||||| |||||||||||||| ||| |||||||| | |||||||||||||| ||||||||  |||||| |||| |||||| |||||||||    
T  37138626 aaagtaaattaacaaaccaaactctcaatcctat-agccaaactaaattctctcacatatgatcaatgatcaagaataatgaaagatcca 37138714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 223 - 338
Target Start/End: Complemental strand, 5846170 - 5846056
Alignment:
Q  223 aaagtacattaacaaaccaaattcttaatcctatcaaccaaactaaattctttcacatatagtcaatggtcaaaaataataaaagatccacaatttttaa 322  Q
    |||| |||||||||||| |||| |||||| ||  |||||||||||| ||||| || |||| || |||||| || |||| ||||||||| ||| | ||||     
T  5846170 aaaggacattaacaaactaaat-cttaattctgacaaccaaactaatttcttccatatatggtgaatggttaagaatagtaaaagatcaacactctttac 5846072  T
Q  323 ttgcatcaatcttcaa 338  Q
    ||||||| ||||||||    
T  5846071 ttgcatccatcttcaa 5846056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 223 - 274
Target Start/End: Complemental strand, 22893342 - 22893291
Alignment:
Q  223 aaagtacattaacaaaccaaattcttaatcctatcaaccaaactaaattctt 274  Q
    ||||||| ||||||||||||| | ||||||||| ||||||||||||||||||    
T  22893342 aaagtacgttaacaaaccaaacttttaatcctaacaaccaaactaaattctt 22893291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 281
Target Start/End: Original strand, 9645575 - 9645633
Alignment:
Q  223 aaagtacattaacaaaccaaattcttaatcctatcaaccaaactaaattctttcacata 281  Q
    ||||||| ||||||||||||| | ||||||||| |||||||| ||||||||| ||||||    
T  9645575 aaagtacgttaacaaaccaaacttttaatcctaacaaccaaattaaattcttccacata 9645633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 8e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 84 - 291
Target Start/End: Complemental strand, 34688991 - 34688788
Alignment:
Q  84 ttttgacaataaaataagcttcatttaagtgttgaaataattagagtataatcaaattgactatgagtcaagacattctcgattcataatttgaaaatca 183  Q
    ||||||||||||||||||||||||| || | |||||||||  |||||| |||||||||| ||||||||  |||||||  | || || | |||||||  |     
T  34688991 ttttgacaataaaataagcttcattcaaatattgaaataacgagagtacaatcaaattggctatgagttgagacatttcccatacacattttgaaagccg 34688892  T
Q  184 aatacatgcaatcaatacacnnnnnnntttaagaaggtgaaagtacattaacaaaccaaattcttaatcctatcaaccaaactaaattctttcacatata 283  Q
    || |||||| | ||||||||       ||||||||    ||||| ||||||||||||||| |||||||||||  | |||||||||||||||||||||||     
T  34688891 aaaacatgctaccaatacacaaa----tttaagaaaccaaaagttcattaacaaaccaaactcttaatcctaatacccaaactaaattctttcacatatg 34688796  T
Q  284 gtcaatgg 291  Q
    || |||||    
T  34688795 gtaaatgg 34688788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 227 - 309
Target Start/End: Complemental strand, 52549674 - 52549592
Alignment:
Q  227 tacattaacaaaccaaattcttaatcctatcaaccaaactaaattctttcacatatagtcaatggtcaaaaataataaaagat 309  Q
    |||||||||||| |||| ||||||||||| ||| ||||||||||||||||||||||   |||||||||| | |||| ||||||    
T  52549674 tacattaacaaatcaaactcttaatcctaacaatcaaactaaattctttcacatatgaccaatggtcaagagtaatgaaagat 52549592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 230 - 329
Target Start/End: Complemental strand, 46309912 - 46309814
Alignment:
Q  230 attaacaaaccaaattcttaatcctatcaaccaaactaaattctttcacatatagtcaatggtcaaaaataataaaagatccacaatttttaattgcatc 329  Q
    |||||||||||||| ||| ||||||| |||||||| |||||||||| ||| ||    || | |||| |||||| ||||||||||||||||||||||||||    
T  46309912 attaacaaaccaaactct-aatcctaacaaccaaattaaattctttgacacatgactaacgatcaagaataatgaaagatccacaatttttaattgcatc 46309814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 8e-22; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 223 - 328
Target Start/End: Original strand, 8025085 - 8025190
Alignment:
Q  223 aaagtacattaacaaaccaaattcttaatcctatcaaccaaactaaattctttcacatatagtcaatggtcaaaaataataaaagatccacaatttttaa 322  Q
    ||||| ||||||||||||||| ||||||||||| | |||||| |||||  ||||||||||  ||||| ||||| |||||| ||||||||||||| |||||    
T  8025085 aaagttcattaacaaaccaaaatcttaatcctaaccaccaaattaaatattttcacatatgatcaattgtcaagaataatgaaagatccacaatctttaa 8025184  T
Q  323 ttgcat 328  Q
    ||||||    
T  8025185 ttgcat 8025190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 284 - 335
Target Start/End: Original strand, 25101121 - 25101172
Alignment:
Q  284 gtcaatggtcaaaaataataaaagatccacaatttttaattgcatcaatctt 335  Q
    ||||||||||||||||||  ||||||| ||||||||||||||||||||||||    
T  25101121 gtcaatggtcaaaaataacgaaagatcgacaatttttaattgcatcaatctt 25101172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 311
Target Start/End: Original strand, 5521811 - 5521901
Alignment:
Q  223 aaagtacattaacaaaccaaattcttaatcctatcaaccaaactaaattctttcacatata--gtcaatggtcaaaaataataaaagatcc 311  Q
    ||||||||||||||||||||| | | ||  ||| |||||||||| |||||||  |||||||  ||||||| |||  |||||||||||||||    
T  5521811 aaagtacattaacaaaccaaactttaaaatctaacaaccaaacttaattcttctacatatatggtcaatgatcaggaataataaaagatcc 5521901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 329
Target Start/End: Original strand, 36267885 - 36267964
Alignment:
Q  248 taatcctatcaaccaaactaaattctttcacatatagtcaatggtcaaaaataataaaagatccacaatttttaattgcatc 329  Q
    |||||||| |||||||||||||||||  ||| ||| | |||||||||| |||||| ||| |||||| | |||||||||||||    
T  36267885 taatcctaacaaccaaactaaattctcccac-tatggccaatggtcaagaataatgaaaaatccacta-ttttaattgcatc 36267964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 14876065 - 14876116
Alignment:
Q  225 agtacattaacaaaccaaattcttaatcctatcaaccaaactaaattctttca 277  Q
    |||||||||| |||||||| ||||| ||||| |||||||||||| ||||||||    
T  14876065 agtacattaagaaaccaaactctta-tcctaacaaccaaactaatttctttca 14876116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 227 - 324
Target Start/End: Original strand, 46524 - 46621
Alignment:
Q  227 tacattaacaaaccaaattcttaatcctatcaaccaaactaaattctttcacatatagtcaatggtcaaaaataataaaagatccacaatttttaatt 324  Q
    ||||||||||||| ||| ||||||||||| |||| |||||||||||||   ||||||||| ||||| || |||||| |||||||||| || |||||||    
T  46524 tacattaacaaactaaactcttaatcctaacaacaaaactaaattcttctgcatatagtcgatggttaataataatgaaagatccacgatctttaatt 46621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 223 - 274
Target Start/End: Complemental strand, 40704316 - 40704265
Alignment:
Q  223 aaagtacattaacaaaccaaattcttaatcctatcaaccaaactaaattctt 274  Q
    ||||||| ||||||||||||| | ||||||||||||||||||||||||||||    
T  40704316 aaagtacgttaacaaaccaaacttttaatcctatcaaccaaactaaattctt 40704265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 325
Target Start/End: Original strand, 28426815 - 28426917
Alignment:
Q  223 aaagtacattaacaaaccaaattcttaatcctatcaaccaaactaaattctttcacatatagtcaatggtcaaaaataataaaagatccacaatttttaa 322  Q
    |||||| |||||| ||||||| | || ||||||  | ||||||||||| ||  | |||||  |||||||||||||||||| ||||| ||||||| |||||    
T  28426815 aaagtaaattaaccaaccaaagtttttatcctaagagccaaactaaatcctcccgcatatgatcaatggtcaaaaataatgaaagaaccacaatctttaa 28426914  T
Q  323 ttg 325  Q
    |||    
T  28426915 ttg 28426917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 141
Target Start/End: Complemental strand, 25795289 - 25795239
Alignment:
Q  91 aataaaataagcttcatttaagtgttgaaataattagagtataatcaaatt 141  Q
    ||||||| |||| |||||||| |||||||||||| |||||| |||||||||    
T  25795289 aataaaacaagcctcatttaaatgttgaaataataagagtacaatcaaatt 25795239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 227 - 309
Target Start/End: Original strand, 1781555 - 1781637
Alignment:
Q  227 tacattaacaaaccaaattcttaatcctatcaaccaaactaaattctttcacatatagtcaatggtcaaaaataataaaagat 309  Q
    ||||||||||||||||| ||||||||||| |  |||||||||||| ||  |||||| ||||||||| || | |||||||||||    
T  1781555 tacattaacaaaccaaaatcttaatcctaacggccaaactaaattattctacatatggtcaatggtaaagagtaataaaagat 1781637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 223 - 309
Target Start/End: Original strand, 1770985 - 1771072
Alignment:
Q  223 aaagtacattaacaaaccaaattcttaatcctatcaaccaaactaaatt-ctttcacatatagtcaatggtcaaaaataataaaagat 309  Q
    |||||||||||||||  |||| ||||||||||| | |||||||||||||  || ||||||| ||||||||| || | |||||||||||    
T  1770985 aaagtacattaacaagtcaaaatcttaatcctaaccaccaaactaaattaattccacatatggtcaatggtaaagagtaataaaagat 1771072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 223 - 302
Target Start/End: Complemental strand, 2611616 - 2611537
Alignment:
Q  223 aaagtacattaacaaaccaaattcttaatcctatcaaccaaactaaattctttcacatatagtcaatggtcaaaaataat 302  Q
    |||||||||||||||  |||| | ||||||||| |||| |||||||||| ||||| |||| ||||||||| || ||||||    
T  2611616 aaagtacattaacaagtcaaacttttaatcctaacaactaaactaaattatttcatatatggtcaatggtaaagaataat 2611537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 311
Target Start/End: Original strand, 3135515 - 3135586
Alignment:
Q  240 caaattcttaatcctatcaaccaaactaaattctttcacatatagtcaatggtcaaaaataataaaagatcc 311  Q
    |||| ||||||| ||| ||||||||||||||||||||||||||  | |||| ||||||||||  ||||||||    
T  3135515 caaactcttaattctaacaaccaaactaaattctttcacatatgataaatgatcaaaaataaggaaagatcc 3135586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 240 - 313
Target Start/End: Complemental strand, 1765201 - 1765128
Alignment:
Q  240 caaattcttaatcctatcaaccaaactaaattctttcacatatagtcaatggtcaaaaataataaaagatccac 313  Q
    |||| ||||||||| | ||||||||||||||||||||| |||||| ||||| |||| |||||| ||| ||||||    
T  1765201 caaactcttaatcccaacaaccaaactaaattctttcaaatatagacaatgatcaataataatgaaaaatccac 1765128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 337
Target Start/End: Complemental strand, 27070493 - 27070448
Alignment:
Q  292 tcaaaaataataaaagatccacaatttttaattgcatcaatcttca 337  Q
    |||| |||||| ||| ||||||||| ||||||||||||||||||||    
T  27070493 tcaagaataatgaaatatccacaatctttaattgcatcaatcttca 27070448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 329
Target Start/End: Original strand, 2420166 - 2420272
Alignment:
Q  223 aaagtacattaacaaaccaaattcttaatcctatcaaccaaactaaattctttcacatatagtcaatggtcaaaaataataaaagatccacaatttttaa 322  Q
    |||||| ||||| |||| ||| ||||||| |||  ||||||||||||||||||| |||||   ||||| | || |||||| ||||||| ||| | || ||    
T  2420166 aaagtatattaaaaaactaaactcttaattctaataaccaaactaaattctttctcatatgaccaatgatgaagaataatgaaagatctacagtcttcaa 2420265  T
Q  323 ttgcatc 329  Q
    |||||||    
T  2420266 ttgcatc 2420272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1609 times since January 2019
Visitors: 1426