View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0130_low_6 (Length: 219)
Name: NF0130_low_6
Description: NF0130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0130_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 13738173 - 13737968
Alignment:
| Q |
1 |
ggcatagcttgaca-gtattctgcggtatgaactgagcatgccgaaaatgtgtatgacatactatgactttgagttgaaaagtatttgtcttagtctt-- |
97 |
Q |
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| T |
13738173 |
ggcatagtttgacatgtattctgcggtatgaactgagcataccgaaaacgtgtatgatatactatgactttgagttgagaagtatttgtcttagtctttt |
13738074 |
T |
|
| Q |
98 |
gagtattcatagtaaaatgtatgaaattttctgaaaacagtttaggagaatcccagaaggtcatccatacacctacttcgtagttaatatacgattatgt |
197 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||| |
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| T |
13738073 |
gagcattcatagtaaaatgtatgaaattttctgaaaacagtttaggagaatcccagaaggtcattcgtacacctacttcgtagttaaaatacgattatgt |
13737974 |
T |
|
| Q |
198 |
gatgat |
203 |
Q |
| |
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||||| |
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| T |
13737973 |
tatgat |
13737968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 13751612 - 13751407
Alignment:
| Q |
1 |
ggcatagcttgaca-gtattctgcggtatgaactgagcatgccgaaaatgtgtatgacatactatgactttgagttgaaaagtatttgtcttagtctt-- |
97 |
Q |
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||||||||| |||| ||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
13751612 |
ggcatagctggacatgtattttgcggtatgaactgagcatgccgaaaacgtgtatgatatactatgactttgagttgaaaagtacttgtcttagtctttt |
13751513 |
T |
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| Q |
98 |
gagtattcatagtaaaatgtatgaaattttctgaaaacagtttaggagaatcccagaaggtcatccatacacctacttcgtagttaatatacgattatgt |
197 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||| ||||||| |
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| T |
13751512 |
gagtattcatagtaaaatgtattaaattttctgaaaacagtttaggagaatcccaggaggtcatccatacacctacttcgtagtttaaatacaattatgt |
13751413 |
T |
|
| Q |
198 |
gatgat |
203 |
Q |
| |
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||||| |
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| T |
13751412 |
tatgat |
13751407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 13765005 - 13764800
Alignment:
| Q |
1 |
ggcatagcttgacag-tattctgcggtatgaactgagcatgccgaaaatgtgtatgacatactatgactttgagttgaaaagtatttgtcttagtctt-- |
97 |
Q |
| |
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|||||||||||||| |||||||| ||||||||| ||||||||||||| |||||||| ||||||||| |||| ||||||||||||||||||||||||| |
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| T |
13765005 |
ggcatagcttgacatatattctgcagtatgaacttagcatgccgaaaacgtgtatgatatactatgagtttgggttgaaaagtatttgtcttagtctttt |
13764906 |
T |
|
| Q |
98 |
gagtattcatagtaaaatgtatgaaattttctgaaaacagtttaggagaatcccagaaggtcatccatacacctacttcgtagttaatatacgattatgt |
197 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
13764905 |
gagtattcatagtaaaatgtatgaaattttctgaaaacagtttaggagaataccacaaggtcatccatacacctacttcgtagttaaaatacgattatgt |
13764806 |
T |
|
| Q |
198 |
gatgat |
203 |
Q |
| |
|
||||| |
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|
| T |
13764805 |
tatgat |
13764800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 11614287 - 11614238
Alignment:
| Q |
154 |
aaggtcatccatacacctacttcgtagttaatatacgattatgtgatgat |
203 |
Q |
| |
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|||||||||||||||||||||||| | |||| |||||||||||| ||||| |
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| T |
11614287 |
aaggtcatccatacacctacttcgcaattaaaatacgattatgttatgat |
11614238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 203
Target Start/End: Complemental strand, 15996294 - 15996235
Alignment:
| Q |
144 |
agaatcccagaaggtcatccatacacctacttcgtagttaatatacgattatgtgatgat |
203 |
Q |
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|||||| || |||||||||||||||| ||||||| |||||| |||||||||||| ||||| |
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| T |
15996294 |
agaatctcaaaaggtcatccatacacatacttcgcagttaaaatacgattatgtaatgat |
15996235 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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