View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0133_low_1 (Length: 621)
Name: NF0133_low_1
Description: NF0133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0133_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 442; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 69 - 526
Target Start/End: Complemental strand, 31063984 - 31063527
Alignment:
| Q |
69 |
gacaagagttgaagaaacaaagcttgttcttaacataatccccatatggctagcttcattaacaactggaataactttagcacaagctacaacactcttt |
168 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31063984 |
gacaagagttgaagaaacaaagcttgttcttaacataatccccatatggctagcttcattaacaactggaataactttagcacaagctacaacactcttt |
31063885 |
T |
|
| Q |
169 |
gtaaaacaagcagcttcgatgaacttgaagctaagcgacaatttcactatcccaccaggttctgttgtctctgttacagcaattggcaccttgatatttg |
268 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31063884 |
gtaaaacaagcagcttcaatgaacttgaagctaagcgacaatttcacaatcccaccaggttctgttgtctctgttacagcaattggcaccttgatatttg |
31063785 |
T |
|
| Q |
269 |
ttcccttatatgacaaagttcttgtaccaattatgagaaaaatcactggtaatgaaagaggcatcagcatccttagaagaattgccattggcttagcatt |
368 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31063784 |
ttcccttatatgacaaagttcttgtaccaattatgagaaaaatcactggtaatgaaagaggcatcagcatccttagaagaattgccattggcttagcatt |
31063685 |
T |
|
| Q |
369 |
ttcagtcatggttatgattgttgcagccttagtagaagctaagagacttagaatgcatgagcgagaaattctcagatcaggggaaacaggaaaaaatact |
468 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
31063684 |
ttcagtcatggttatgattgttgcagccttagtagaagctaagagacttagaatgcatgagcaagaaattctcagatcaggagaaacaggaaaaaatact |
31063585 |
T |
|
| Q |
469 |
atgagtgtcttttggttagtccctcaatatttgatccttggtttcggtgattcatttt |
526 |
Q |
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| T |
31063584 |
atgagtgtcttttggttagtccctcaatatttgatccttggtttcggtgattcatttt |
31063527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 69 - 436
Target Start/End: Complemental strand, 31075364 - 31074997
Alignment:
| Q |
69 |
gacaagagttgaagaaacaaagcttgttcttaacataatccccatatggctagcttcattaacaactggaataactttagcacaagctacaacactcttt |
168 |
Q |
| |
|
||||||||| ||||||||||||||| |||| || |||| || ||||||||| ||||||||||||| |||||| | ||||||||| | ||||||||| |
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| T |
31075364 |
gacaagagtagaagaaacaaagcttattctgaatgtaattccaatatggctaacttcattaacaacaggaatatgtgtagcacaaggctccacactcttt |
31075265 |
T |
|
| Q |
169 |
gtaaaacaagcagcttcgatgaacttgaagctaagcgacaatttcactatcccaccaggttctgttgtctctgttacagcaattggcaccttgatatttg |
268 |
Q |
| |
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||||||||||| ||||| |||||||||||| |||| |||| |||||| |||||||||| ||||||| | ||| |||||||||||||||| |||| || |
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| T |
31075264 |
gtaaaacaagctgcttcaatgaacttgaagataagtgacagtttcacaatcccaccagcttctgtttccactgcagcagcaattggcaccttaatatctg |
31075165 |
T |
|
| Q |
269 |
ttcccttatatgacaaagttcttgtaccaattatgagaaaaatcactggtaatgaaagaggcatcagcatccttagaagaattgccattggcttagcatt |
368 |
Q |
| |
|
|||| |||||||||| || |||| ||||| |||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||| ||| |
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| T |
31075164 |
ttccaatatatgacaagattattgttccaatgctgagaaaaatcactggtaatgaaagaggaatcagcatacttagaagaatttccattggcttcacatc |
31075065 |
T |
|
| Q |
369 |
ttcagtcatggttatgattgttgcagccttagtagaagctaagagacttagaatgcatgagcgagaaa |
436 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
31075064 |
ttcagtcatagttatgattgttgcagcattagtagaagctaagagacttagaatgcatgagcaagaaa |
31074997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 290 - 458
Target Start/End: Complemental strand, 31057681 - 31057513
Alignment:
| Q |
290 |
ttgtaccaattatgagaaaaatcactggtaatgaaagaggcatcagcatccttagaagaattgccattggcttagcattttcagtcatggttatgattgt |
389 |
Q |
| |
|
|||| ||||||||||| ||||||||||| ||||||||||||||||| |||||||| || || ||| ||||| || | |||| ||| ||||| || | |
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| T |
31057681 |
ttgttccaattatgaggaaaatcactggcaatgaaagaggcatcagtatccttagcaggataaacatcggcttgacactctcagccattattatggttct |
31057582 |
T |
|
| Q |
390 |
tgcagccttagtagaagctaagagacttagaatgcatgagcgagaaattctcagatcaggggaaacagg |
458 |
Q |
| |
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| ||||||||||||||| ||||||||||||||||| |||| ||||| | ||| ||||||||||||| |
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| T |
31057581 |
ttcagccttagtagaagttaagagacttagaatgcttgagaatgaaatcttgagaacaggggaaacagg |
31057513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 466 - 526
Target Start/End: Complemental strand, 31074997 - 31074937
Alignment:
| Q |
466 |
actatgagtgtcttttggttagtccctcaatatttgatccttggtttcggtgattcatttt |
526 |
Q |
| |
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||||||||||| ||||||||||| |||||||||||||| ||||| | ||||||||||||| |
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| T |
31074997 |
actatgagtgtgttttggttagtgcctcaatatttgattcttggcattggtgattcatttt |
31074937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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