View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0134-Insertion-1 (Length: 1201)
Name: NF0134-Insertion-1
Description: NF0134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0134-Insertion-1 |
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Alignment Details
Target: chr6 (Bit Score: 654; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 654; E-Value: 0
Query Start/End: Original strand, 153 - 915
Target Start/End: Original strand, 32049097 - 32049858
Alignment:
| Q |
153 |
tttggttaatttagttgactagatgactaattcaataaaatcgtcaaaattatggttatgtcaagtgcaagaataaccacaattttgtatacattttggg |
252 |
Q |
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| T |
32049097 |
tttggttaatttagttgactagatgactaattcaataaaatcatcaaaattatggttatgtcaagtgcaagaataaccacaattttgtatacattttagg |
32049196 |
T |
|
| Q |
253 |
acagaggaagtattatacatgttccaagtttgtagattgaagactatcaagatttgttggaaattggtactaactagcac--tacatatataccgttcaa |
350 |
Q |
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| T |
32049197 |
acagaggaagtattatacatgttccaagtttgtagattaaagactatcaagatttgttggaaattggtactaactagcactatatatatataccgttcaa |
32049296 |
T |
|
| Q |
351 |
tgtcttgtcacaaattttgtatacaaactatctttaatgattgggaaggaggacaccgtggaaaatgtgtataatatacacgtagcaccctatagtttga |
450 |
Q |
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| T |
32049297 |
tgtcttgtcacaaattttgtatacaaactatctttaatgattgggaaggaggacaccgtggaaaatgtgtataatatacacgtagcaccctatagtttga |
32049396 |
T |
|
| Q |
451 |
ttatattgtaatcagtaatcaccacagtcaatcaatcagaaccttttgaatgaagatcgaaaaactcatatcttaaatccgatttatcgaaattaaaata |
550 |
Q |
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| T |
32049397 |
ttatattgtaatcagtaatcaccacagtcaatcaatcagaaccttctgaatgaagatggaataactcatattataattttga-ttatcaaaattaaaata |
32049495 |
T |
|
| Q |
551 |
tgaatcacttgatcttcatctgacgttctaatttactgactgtggtgaatgcgaggtattataattgagacaactaaattttggatggtcacaacactca |
650 |
Q |
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| T |
32049496 |
tgaatcgtttgatcttcatctgacgttccgatttaccgactgtggtgaatgcgaggtattgtaattgagacaactaaattttggatggtcacaacactca |
32049595 |
T |
|
| Q |
651 |
acaaccaccatcagctggctcaattgaacttaaaagaccatttcctctcaattgcatgcaatggtcttcagcatcaacttgagcacaaataatgaccact |
750 |
Q |
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| T |
32049596 |
acaaccaccatcagctggctcaattgaacttaaaagaccatttcctctcaattgcatgcaatggtcttcagcatcaacttgagcacaaataatgaccact |
32049695 |
T |
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| Q |
751 |
gctaatccattaatatgtgcttcttgcatgacgttaaactgctatatcaactgtcattccagggtatcactttcatcaacacttgcactacatattctct |
850 |
Q |
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| T |
32049696 |
gctaatccattaatatgtgcttcttgcatgacgtt-aactgctatatcaactgtcattcca-ggtatcactttcatcaacacttgcactacatattctct |
32049793 |
T |
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| Q |
851 |
tttgttatagttgtcattgtgtagcattactctgtatggtggtgatgtcttttttgatttcctag |
915 |
Q |
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| T |
32049794 |
tttgttatagttgtcattgtgtagcattactctgtatggtggtgatgtcttttttgatttcctag |
32049858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 937 - 1099
Target Start/End: Original strand, 32050039 - 32050201
Alignment:
| Q |
937 |
tgttatcaaaggtttgaaactatgtagcatggatacagacacaaacatcatatatgtcactggcttgcgaaaatagaaatgatgcatat-ataccaagat |
1035 |
Q |
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| T |
32050039 |
tgttatcaaaggttttgaactatgtagcatggatacagacacatacatcatatatgtcaatggcttgc-aaaatagaaatgatgcatataatcacaag-t |
32050136 |
T |
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| Q |
1036 |
gttaatatcatgtgcagcattgggaacacgccttc-atct-aagtactaagaaaatcgctattaga |
1099 |
Q |
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| T |
32050137 |
gttaatatcatgtcaggcatt-ggaacacgccttcaatctaaagtactaagaaaatcgctattaga |
32050201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 70; E-Value: 6e-31
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 32048996 - 32049073
Alignment:
| Q |
8 |
taaagaagtctcacaacaacatattaaacatataataatgctttgaatttcgtttgagtaatgatattcagaaactga |
85 |
Q |
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| T |
32048996 |
taaagaagtcacacaacaacatattaaacatataataatgctttgaatttggtttgagtaatgatattcagaaactga |
32049073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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