View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0134-Insertion-2 (Length: 1160)

Name: NF0134-Insertion-2
Description: NF0134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0134-Insertion-2
NF0134-Insertion-2
[»] chr1 (41 HSPs)
chr1 (8-384)||(21790740-21791122)
chr1 (8-384)||(29858914-29859295)
chr1 (225-384)||(14886142-14886309)
chr1 (52-343)||(6690339-6690639)
chr1 (217-384)||(16960018-16960191)
chr1 (213-384)||(46284745-46284923)
chr1 (223-347)||(47052379-47052503)
chr1 (225-347)||(26897033-26897155)
chr1 (223-375)||(14886726-14886885)
chr1 (223-347)||(48302089-48302213)
chr1 (187-347)||(16959538-16959699)
chr1 (217-347)||(44233242-44233372)
chr1 (52-375)||(46285269-46285602)
chr1 (219-347)||(6690984-6691111)
chr1 (239-343)||(26896507-26896611)
chr1 (221-347)||(2271229-2271355)
chr1 (223-384)||(27651323-27651490)
chr1 (223-347)||(27651998-27652121)
chr1 (223-384)||(21791380-21791546)
chr1 (213-375)||(39848764-39848933)
chr1 (213-330)||(44234550-44234667)
chr1 (213-377)||(47374730-47374901)
chr1 (226-335)||(48301913-48302022)
chr1 (213-384)||(26212909-26213087)
chr1 (223-330)||(29859561-29859668)
chr1 (213-343)||(47374083-47374213)
chr1 (221-385)||(42986746-42986917)
chr1 (213-375)||(7012922-7013091)
chr1 (213-384)||(5496535-5496714)
chr1 (52-148)||(44234362-44234459)
chr1 (223-384)||(5216551-5216718)
chr1 (227-347)||(10716706-10716826)
chr1 (213-384)||(39847799-39847976)
chr1 (213-347)||(7011999-7012132)
chr1 (226-347)||(42986982-42987103)
chr1 (239-346)||(10716838-10716945)
chr1 (48-138)||(27651636-27651726)
chr1 (79-148)||(14886355-14886424)
chr1 (213-279)||(5497205-5497271)
chr1 (267-343)||(51445507-51445583)
chr1 (213-271)||(51446962-51447020)
[»] chr8 (23 HSPs)
chr8 (48-347)||(36731805-36732105)
chr8 (217-384)||(39861542-39861716)
chr8 (8-190)||(39861363-39861544)
chr8 (91-347)||(5882166-5882432)
chr8 (213-384)||(25128576-25128755)
chr8 (223-347)||(17450561-17450684)
chr8 (213-330)||(25191396-25191513)
chr8 (186-313)||(25129224-25129353)
chr8 (214-313)||(5881201-5881300)
chr8 (213-347)||(29361849-29361983)
chr8 (223-348)||(36731374-36731497)
chr8 (213-347)||(29266197-29266331)
chr8 (218-314)||(37437963-37438059)
chr8 (223-336)||(39861007-39861119)
chr8 (221-347)||(5332068-5332194)
chr8 (213-347)||(29267744-29267878)
chr8 (58-139)||(25187977-25188058)
chr8 (221-375)||(5330894-5331055)
chr8 (292-347)||(39130994-39131049)
chr8 (230-375)||(42986646-42986798)
chr8 (232-344)||(42987383-42987495)
chr8 (52-119)||(25129051-25129118)
chr8 (332-384)||(34654928-34654983)
[»] chr6 (23 HSPs)
chr6 (48-384)||(19653573-19653929)
chr6 (223-384)||(8993481-8993649)
chr6 (223-384)||(9017928-9018096)
chr6 (225-384)||(8992897-8993064)
chr6 (225-384)||(9017344-9017511)
chr6 (746-867)||(28177991-28178112)
chr6 (223-385)||(18649796-18649965)
chr6 (223-348)||(32907461-32907584)
chr6 (401-534)||(28241862-28241996)
chr6 (753-843)||(28221052-28221142)
chr6 (262-347)||(9280828-9280913)
chr6 (272-375)||(19651071-19651181)
chr6 (508-571)||(28224959-28225022)
chr6 (572-622)||(28224751-28224801)
chr6 (79-148)||(8993111-8993180)
chr6 (79-148)||(9017558-9017627)
chr6 (401-453)||(28225040-28225092)
chr6 (401-496)||(28180210-28180304)
chr6 (679-730)||(28156285-28156336)
chr6 (747-789)||(28224176-28224218)
chr6 (213-314)||(18154351-18154451)
chr6 (635-685)||(28224660-28224712)
chr6 (676-710)||(28224615-28224649)
[»] chr3 (24 HSPs)
chr3 (52-379)||(28908366-28908710)
chr3 (213-347)||(51827597-51827731)
chr3 (52-384)||(30834147-30834496)
chr3 (223-347)||(41710093-41710217)
chr3 (225-347)||(41709554-41709676)
chr3 (91-347)||(51829240-51829506)
chr3 (223-383)||(53948651-53948818)
chr3 (223-374)||(53949211-53949368)
chr3 (213-369)||(28907892-28908054)
chr3 (262-347)||(43400704-43400789)
chr3 (238-347)||(53948485-53948593)
chr3 (213-384)||(47169044-47169222)
chr3 (223-384)||(38798244-38798410)
chr3 (213-347)||(53949373-53949507)
chr3 (217-384)||(11238507-11238679)
chr3 (213-375)||(47167887-47168056)
chr3 (213-305)||(30833747-30833838)
chr3 (221-384)||(53949972-53950143)
chr3 (213-347)||(20202090-20202222)
chr3 (242-384)||(20200524-20200674)
chr3 (242-384)||(20202708-20202858)
chr3 (79-148)||(41709723-41709792)
chr3 (213-253)||(20199998-20200038)
chr3 (226-384)||(24485855-24486010)
[»] chr7 (32 HSPs)
chr7 (217-384)||(43334618-43334791)
chr7 (217-384)||(3163389-3163562)
chr7 (223-375)||(3474902-3475061)
chr7 (187-384)||(30469503-30469708)
chr7 (189-384)||(3162859-3163063)
chr7 (217-347)||(30469992-30470121)
chr7 (223-347)||(26774029-26774153)
chr7 (225-375)||(3475469-3475626)
chr7 (217-383)||(46428010-46428183)
chr7 (213-384)||(8487695-8487874)
chr7 (187-384)||(43334122-43334330)
chr7 (225-347)||(26774573-26774691)
chr7 (213-384)||(8487020-8487198)
chr7 (213-384)||(8512695-8512873)
chr7 (223-384)||(30659845-30660013)
chr7 (233-377)||(38816694-38816835)
chr7 (213-384)||(8513350-8513529)
chr7 (223-347)||(37422594-37422717)
chr7 (214-344)||(21866271-21866401)
chr7 (223-384)||(30660406-30660573)
chr7 (213-384)||(38059837-38060016)
chr7 (187-384)||(46427498-46427693)
chr7 (213-384)||(31178631-31178808)
chr7 (213-347)||(25245548-25245682)
chr7 (213-343)||(28451163-28451293)
chr7 (213-384)||(31179808-31179984)
chr7 (221-347)||(21865601-21865727)
chr7 (79-148)||(26774457-26774526)
chr7 (219-344)||(26076786-26076911)
chr7 (219-344)||(26100573-26100698)
chr7 (348-384)||(30001794-30001830)
chr7 (240-347)||(43742755-43742862)
[»] chr4 (19 HSPs)
chr4 (160-385)||(42883295-42883514)
chr4 (217-384)||(21825039-21825211)
chr4 (187-384)||(21824548-21824753)
chr4 (213-347)||(42882783-42882917)
chr4 (213-384)||(45919501-45919680)
chr4 (213-347)||(45920174-45920308)
chr4 (213-376)||(4158498-4158668)
chr4 (213-348)||(46618384-46618519)
chr4 (213-375)||(46619514-46619683)
chr4 (221-377)||(41696015-41696178)
chr4 (52-182)||(52363476-52363606)
chr4 (213-375)||(41695384-41695553)
chr4 (221-347)||(42058521-42058645)
chr4 (221-314)||(29212062-29212155)
chr4 (192-275)||(24534111-24534196)
chr4 (213-314)||(24377837-24377937)
chr4 (56-139)||(42883193-42883277)
chr4 (213-375)||(4157780-4157940)
chr4 (213-272)||(52363111-52363170)
[»] chr2 (24 HSPs)
chr2 (79-375)||(4776247-4776560)
chr2 (217-384)||(19386286-19386459)
chr2 (213-383)||(121296-121473)
chr2 (214-386)||(122842-123020)
chr2 (187-347)||(19386778-19386939)
chr2 (223-382)||(20202643-20202808)
chr2 (186-336)||(38956050-38956201)
chr2 (213-384)||(42848708-42848886)
chr2 (223-384)||(8911734-8911902)
chr2 (223-384)||(8911157-8911323)
chr2 (213-375)||(39629401-39629570)
chr2 (213-384)||(42849385-42849564)
chr2 (223-377)||(20203197-20203358)
chr2 (213-381)||(13327738-13327913)
chr2 (213-314)||(39628805-39628906)
chr2 (213-304)||(4776896-4776987)
chr2 (217-336)||(44929019-44929138)
chr2 (213-372)||(13328698-13328864)
chr2 (213-343)||(2477242-2477372)
chr2 (221-343)||(2477851-2477973)
chr2 (213-375)||(38273551-38273720)
chr2 (48-138)||(8911378-8911468)
chr2 (48-138)||(38956263-38956353)
chr2 (230-347)||(44926676-44926794)
[»] scaffold0155 (3 HSPs)
scaffold0155 (188-384)||(989-1191)
scaffold0155 (213-343)||(1668-1798)
scaffold0155 (52-119)||(1304-1371)
[»] chr5 (10 HSPs)
chr5 (213-347)||(42519675-42519809)
chr5 (186-347)||(42520289-42520452)
chr5 (213-384)||(42521578-42521756)
chr5 (221-384)||(23206089-23206260)
chr5 (213-384)||(21147984-21148162)
chr5 (213-375)||(42520617-42520786)
chr5 (221-383)||(21145927-21146097)
chr5 (226-297)||(31218780-31218851)
chr5 (52-119)||(42520106-42520173)
chr5 (221-347)||(31219884-31220010)
[»] scaffold0009 (2 HSPs)
scaffold0009 (213-384)||(105501-105679)
scaffold0009 (213-384)||(106176-106355)
[»] scaffold0188 (1 HSPs)
scaffold0188 (213-384)||(25604-25783)
[»] scaffold0038 (8 HSPs)
scaffold0038 (401-534)||(42024-42158)
scaffold0038 (753-843)||(21550-21640)
scaffold0038 (508-571)||(25457-25520)
scaffold0038 (572-622)||(25249-25299)
scaffold0038 (401-453)||(25538-25590)
scaffold0038 (747-789)||(24674-24716)
scaffold0038 (635-685)||(25158-25210)
scaffold0038 (676-710)||(25113-25147)
[»] scaffold0301 (1 HSPs)
scaffold0301 (213-384)||(20721-20897)
[»] scaffold0853 (2 HSPs)
scaffold0853 (213-314)||(2211-2312)
scaffold0853 (213-384)||(606-779)


Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 41)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 8 - 384
Target Start/End: Complemental strand, 21791122 - 21790740
Alignment:
Q  8 acaagaatattagcagcattttgtcaacnnnnnnnnnntggcagcatgaactcaagaattatatgatccatcaaatgaaagagtagctaatacaaacagg 107  Q
    |||||||||||| |||||||||||||||          | ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||        
T  21791122 acaagaatattaacagcattttgtcaacaaaaaaaaaatagcagcatgaactcgagaattatatgatccatcaaatgaaagagtagttaatacaaa---- 21791027  T
Q  108 atacaaagataatccaacaaaaattagtaaatagaatctctnnnnnnntagtgggagaaatcaaatggcaatcattagtgcaaaatataacgaaaatggt 207  Q
    |||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  21791026 atacaaagataatccaacaaaaattagtaaatagaatctctaaaaaaatagtgggagaaatcaaatggcaatcattggtgcaaaatataacgaaaatggt 21790927  T
Q  208 aagta--taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgt 305  Q
    |||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21790926 aagtaattaaccaagagaagaaagaattaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgt 21790827  T
Q  306 tagattaaagttggattaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatccc-atatatata 384  Q
    ||||||||||||||||||||||||||||||||||||||||||       ||||||| |||||||||||||||||||| |||||||||    
T  21790826 tagattaaagttggattaatggttatgatttggtgtcaaatttaatttgacaccttggtgtcatttgatcctatccctatatatata 21790740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 8 - 384
Target Start/End: Complemental strand, 29859295 - 29858914
Alignment:
Q  8 acaagaatattagcagcattttgtcaacnnnnnnnnnntggcagcatgaactcaagaattatatgatccatcaaatgaaagagtagctaatacaaa---c 104  Q
    ||||||||||||||||||||||||||||          | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |    
T  29859295 acaagaatattagcagcattttgtcaacaaaaaaaaaatagcagcatgaactcaagaattatatgatccatcaaatgaaagagtagctaatacaaacagc 29859196  T
Q  105 aggatacaaagataatccaacaaaaattagtaaatagaatctctnnnnnnntagtgggagaaatcaaatggcaatcattagtgcaaaatataacgaaaat 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||| |||||||||||| |||||||    
T  29859195 aggatacaaagataatccaacaaaaattagtaaatagaatctctaaaaaaatagtgggagaaatcaaatggcaatcattggtgcaaaatatagcgaaaat 29859096  T
Q  205 ggtaagta--taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagaga 302  Q
    ||||||||  |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||      ||||||||||||||||||||||| ||||    
T  29859095 ggtaagtaattaactaagagaagaaagaataaattatttctaaaattaaaatttgactcatttgat------tgtgagaatttaatgaattgatgcgaga 29859002  T
Q  303 cgttagattaaagttggattaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatcccatatatata 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||       ||| ||| ||||||||||||||||| |||||||||||    
T  29859001 cgttagattaaagttggattaatggttatgatttggtgtcaaatttaatttgacatcttggtgtcatttgatcctat-ccatatatata 29858914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 102; E-Value: 5e-50
Query Start/End: Original strand, 225 - 384
Target Start/End: Complemental strand, 14886309 - 14886142
Alignment:
Q  225 gaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaa 324  Q
    ||||||||||||| |||||||||||||||||| | | ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  14886309 gaaagaataaattgtttctaaaattaaaatttagataatttgatcaagcatgtgagcatttaatgaattgatgagagacgtcagattaaagttggattaa 14886210  T
Q  325 tggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatccc-atatatata 384  Q
    |||||||||||||||||||||||       ||||| | |||||||||||||||||||| |||||||||    
T  14886209 tggttatgatttggtgtcaaatttgatttgacaccatggtgtcatttgatcctatccctatatatata 14886142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 52 - 343
Target Start/End: Complemental strand, 6690639 - 6690339
Alignment:
Q  52 catgaactcaagaattatatgatccatcaaatgaaagagtagctaatacaaacaggatacaaagataatccaacaaaaattagtaaatagaatctctnnn 151  Q
    ||||||| ||||||| |||| || || |||||||||| ||||| |||| ||  | ||||||||||||| |||||||||| ||||||||| |||||||       
T  6690639 catgaacacaagaataatatcatacaacaaatgaaagcgtagcgaatataat-atgatacaaagataagccaacaaaaactagtaaataaaatctctaca 6690541  T
Q  152 nnnntagt-gggagaaatcaaatggcaatcat--------tagtgcaaaatataacgaaaatggtaagtat--aaccaagagaagaaagaataaattatt 240  Q
        |||| ||||||||||||||| |||||||        | |||||||||||||| |||| || || |||  |||||||| |||||| |||||||||||    
T  6690540 aaa-tagtagggagaaatcaaatgacaatcatctatctattggtgcaaaatataacaaaaacgggaactatccaaccaagaaaagaaataataaattatt 6690442  T
Q  241 tctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaatggttatgatttggtg 340  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||  ||||  ||||||||||||||||||||||| |||||| ||    
T  6690441 tctaaaattaaaatttggatcatttgatcaagcatgtgagcatttaataaattgatgagcaacgtcggattaaagttggattaatggttaggatttgatg 6690342  T
Q  341 tca 343  Q
    |||    
T  6690341 tca 6690339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 217 - 384
Target Start/End: Original strand, 16960018 - 16960191
Alignment:
Q  217 caagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagt 316  Q
    ||||||||||||||| ||||| |||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||    
T  16960018 caagagaagaaagaa-aaattgtttctaaaattaaaatttggataatttgatcaagcatgtgagcatttaatgaattgatgatagacgttggattaaagt 16960116  T
Q  317 tggattaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatcccatatatata 384  Q
    || ||||||||||||||||||||||||||||       ||||| |  ||||||||||||||||||||||||||||    
T  16960117 tgaattaatggttatgatttggtgtcaaatttaatttgacaccatgatgtcatttgatcctatcccatatatata 16960191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 213 - 384
Target Start/End: Complemental strand, 46284923 - 46284745
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    |||||||||||||||||||||  ||||||||||||||||||||||  |||||||||||||||||| || ||||||||||||| ||||||||||  |||||    
T  46284923 taaccaagagaagaaagaatattttatttctaaaattaaaatttgcatcatttgatcaagcatgtaagcatttaatgaattgttgagagacgtcggatta 46284824  T
Q  313 aagttggattaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatcccatatatata 384  Q
    |||||||||||||||||| |||||| |||||||||       |||| || |||||||||||||||||||||||||||||    
T  46284823 aagttggattaatggttaggatttgatgtcaaatttaatttgacactttggtgtcatttgatcctatcccatatatata 46284745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 223 - 347
Target Start/End: Complemental strand, 47052503 - 47052379
Alignment:
Q  223 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggatt 322  Q
    ||||||||||||||| ||| |||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||    
T  47052503 aagaaagaataaattgtttttaaaattaaaatttagatcatttgatcaagcatgtgagcatttaatgaattgatgagagacgttggattaaagttgaatt 47052404  T
Q  323 aatggttatgatttggtgtcaaatt 347  Q
    |||||||||||||||||||||||||    
T  47052403 aatggttatgatttggtgtcaaatt 47052379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 95; E-Value: 7e-46
Query Start/End: Original strand, 225 - 347
Target Start/End: Original strand, 26897033 - 26897155
Alignment:
Q  225 gaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaa 324  Q
    ||||||||||||| |||||||||||||||||| | | |||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||    
T  26897033 gaaagaataaattgtttctaaaattaaaatttagataatttgatcaagcatatgagtatttaatgaattgatgagagacgtcagattaaagttggattaa 26897132  T
Q  325 tggttatgatttggtgtcaaatt 347  Q
    |||||||||||||||||||||||    
T  26897133 tggttatgatttggtgtcaaatt 26897155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 223 - 375
Target Start/End: Original strand, 14886726 - 14886885
Alignment:
Q  223 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggatt 322  Q
    ||||||||||||||| |||||||||||||||||| | ||||||| ||||||||||||  ||||||||||||||||||||||||| ||||||||||| |||    
T  14886726 aagaaagaataaattgtttctaaaattaaaatttagatcatttgctcaagcatgtgaacatttaatgaattgatgagagacgttggattaaagttgaatt 14886825  T
Q  323 aatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatccc 375  Q
    |||||||||||||||||||||||||       ||||| | ||||||||||||||||||||    
T  14886826 aatggttatgatttggtgtcaaatttaatttgacaccatggtgtcatttgatcctatccc 14886885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 89; E-Value: 3e-42
Query Start/End: Original strand, 223 - 347
Target Start/End: Original strand, 48302089 - 48302213
Alignment:
Q  223 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggatt 322  Q
    ||||||||||||||| |||||||||||||||| | | | |||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  48302089 aagaaagaataaattgtttctaaaattaaaatgtagataatttgatcaaacatgtgagcatttaatgaattgatgagagacgtgagattaaagttggatt 48302188  T
Q  323 aatggttatgatttggtgtcaaatt 347  Q
    |||||||||| ||||||||||||||    
T  48302189 aatggttatggtttggtgtcaaatt 48302213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 88; E-Value: 1e-41
Query Start/End: Original strand, 187 - 347
Target Start/End: Complemental strand, 16959699 - 16959538
Alignment:
Q  187 gcaaaatataacgaaaatggtaagta--taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatt 284  Q
    ||||||||||| ||||| ||||||||  ||| ||||| ||||| |||||||||||||||||||||||||||||| | ||||| |||| |||||||| |||    
T  16959699 gcaaaatataatgaaaacggtaagtaattaatcaagaaaagaaggaataaattatttctaaaattaaaatttggattatttgttcaaacatgtgagcatt 16959600  T
Q  285 taatgaattgatgagagacgttagattaaagttggattaatggttatgatttggtgtcaaatt 347  Q
    |||||| |||||||||||||| ||||||||| |||||||||||||| ||||| ||||||||||    
T  16959599 taatgatttgatgagagacgtcagattaaag-tggattaatggttaggatttagtgtcaaatt 16959538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 217 - 347
Target Start/End: Complemental strand, 44233372 - 44233242
Alignment:
Q  217 caagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagt 316  Q
    |||||||| ||| |||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||    
T  44233372 caagagaataaataataaattatttttaaaattaaaatttggatcatttgatcaagcatgtgagcatttaataaattgatgagagacgtcagattaaagt 44233273  T
Q  317 tggattaatggttatgatttggtgtcaaatt 347  Q
    ||||||||| ||||  ||||| |||||||||    
T  44233272 tggattaattgttagaatttgatgtcaaatt 44233242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 52 - 375
Target Start/End: Original strand, 46285269 - 46285602
Alignment:
Q  52 catgaactcaagaattatatgatccatcaaatgaaagagtagctaatacaaacaggatacaaagataatccaacaaaaattagtaaatagaatctctnnn 151  Q
    ||||||| ||||||| |||  || || |||||||| |  |||| |||| ||||| ||||||||||||| |||||||||||||||| |||||||||||       
T  46285269 catgaacacaagaataataccatacaacaaatgaacgcatagccaatataaacatgatacaaagataagccaacaaaaattagtatatagaatctctaca 46285368  T
Q  152 nnnntagt-gggagaaatcaaatggcaatcat-----tagtgcaaaatataacgaaaatggtaagtat--aaccaagagaagaaagaataaattatttct 243  Q
        |||| |||||||||||||||||||||||     || |||    |||||| |||| || || |||  |||| ||| |||||||||||||||||||||    
T  46285369 aaa-tagtagggagaaatcaaatggcaatcatctatctattgc----tataacaaaaacgggaactattcaacccagaaaagaaagaataaattatttct 46285463  T
Q  244 aaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaatggttatgatttggtgtca 343  Q
    ||||||||||||||| | |||||||||||||| |||| |||||||||||||||||   ||||   ||| | |||||||||||||||| ||||||||||||    
T  46285464 aaaattaaaatttggataatttgatcaagcatttgagcatttaatgaattgatgatcaacgtcgaatttacgttggattaatggttaggatttggtgtca 46285563  T
Q  344 aatt-------acaccttagtgtcatttgatcctatccc 375  Q
    ||||       ||||||| ||||||||||||| ||||||    
T  46285564 aatttaatttgacaccttggtgtcatttgatcatatccc 46285602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 81; E-Value: 2e-37
Query Start/End: Original strand, 219 - 347
Target Start/End: Original strand, 6690984 - 6691111
Alignment:
Q  219 agagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttg 318  Q
    |||||||||||||||  ||||||||||| ||||||||||  |||||||||||| |||||||| ||||||||||||| |||||||| |  |||||||||||    
T  6690984 agagaagaaagaatattttatttctaaa-ttaaaatttgaatcatttgatcaaacatgtgagtatttaatgaattgttgagagacatcggattaaagttg 6691082  T
Q  319 gattaatggttatgatttggtgtcaaatt 347  Q
    |||||||||||||||||||||||||||||    
T  6691083 gattaatggttatgatttggtgtcaaatt 6691111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 81; E-Value: 2e-37
Query Start/End: Original strand, 239 - 343
Target Start/End: Complemental strand, 26896611 - 26896507
Alignment:
Q  239 tttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaatggttatgatttgg 338  Q
    |||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||    
T  26896611 tttctaaaattaaaatttagatcatttgatcaagcatgtgagcatttaatgaattgatgagagacgttggattaaagttgaattaatagttatgatttgg 26896512  T
Q  339 tgtca 343  Q
    |||||    
T  26896511 tgtca 26896507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 221 - 347
Target Start/End: Original strand, 2271229 - 2271355
Alignment:
Q  221 agaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttgga 320  Q
    ||||||||||||| |||||||||||||||||| ||| | ||||||||||||||||||||  || ||||||||||||||| |||||  |||||||||||||    
T  2271229 agaagaaagaatacattatttctaaaattaaatttttgatcatttgatcaagcatgtgaacatctaatgaattgatgagggacgtcggattaaagttgga 2271328  T
Q  321 ttaatggttatgatttggtgtcaaatt 347  Q
    |||||||||| ||||| ||||||||||    
T  2271329 ttaatggttaggatttagtgtcaaatt 2271355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 223 - 384
Target Start/End: Complemental strand, 27651490 - 27651323
Alignment:
Q  223 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggatt 322  Q
    ||||||||||||||| ||||||||||||||| || | | ||||||| ||| ||||||| ||||||||||||||||||||||||  ||||||||||| |||    
T  27651490 aagaaagaataaattgtttctaaaattaaaaattagataatttgat-aagtatgtgagcatttaatgaattgatgagagacgtcggattaaagttgaatt 27651392  T
Q  323 aatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatcccatatatata 384  Q
    |||||||||||||| ||||||||||       ||||| | ||||||||||||| |||||||||||||||    
T  27651391 aatggttatgatttagtgtcaaatttaatttgacaccatggtgtcatttgatcatatcccatatatata 27651323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 77; E-Value: 4e-35
Query Start/End: Original strand, 223 - 347
Target Start/End: Original strand, 27651998 - 27652121
Alignment:
Q  223 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggatt 322  Q
    ||||||||| ||||| |||||||||||||||||| | | ||||||| ||||||||||| ||||||||||||||||||| ||||  ||||||||||| |||    
T  27651998 aagaaagaacaaattgtttctaaaattaaaatttagataatttgat-aagcatgtgagcatttaatgaattgatgagaaacgtcggattaaagttgaatt 27652096  T
Q  323 aatggttatgatttggtgtcaaatt 347  Q
    |||||||||||||||||||||||||    
T  27652097 aatggttatgatttggtgtcaaatt 27652121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 223 - 384
Target Start/End: Original strand, 21791380 - 21791546
Alignment:
Q  223 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggatt 322  Q
    |||||||||||||||||||||||||||||| ||||| | ||||||  ||||||||||  |||||||||||||| | |||||||  |||||| |||| |||    
T  21791380 aagaaagaataaattatttctaaaattaaattttggattatttga--aagcatgtgaacatttaatgaattgacgggagacgtcggattaaggttgaatt 21791477  T
Q  323 aatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatcccatatatata 384  Q
    |||||||| ||||||||||||||||       ||||| | |||||||||||||||||||||||||||||    
T  21791478 aatggttaagatttggtgtcaaatttaatttgacaccatggtgtcatttgatcctatcccatatatata 21791546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 213 - 375
Target Start/End: Original strand, 39848764 - 39848933
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    ||||||| ||||||||||||||||||||||||||| |||||  ||| ||| ||||||||||||||||| | ||||||| || ||||||| ||||||||||    
T  39848764 taaccaaaagaagaaagaataaattatttctaaaaataaaaggtgggtcacttgatcaagcatgtgagcacttaatgagtttatgagagccgttagatta 39848863  T
Q  313 aagttggattaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatccc 375  Q
    ||  || |||||||| || ||||||||||||||||       ||||||| ||||||||||||||||||||    
T  39848864 aaactgtattaatggctaggatttggtgtcaaatttaatttgacaccttggtgtcatttgatcctatccc 39848933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 213 - 330
Target Start/End: Original strand, 44234550 - 44234667
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    |||||||||||| ||| |||||||||||||||||||||||||| || |||||||||||| |||||||  ||||||| |||| |||| | |||| | ||||    
T  44234550 taaccaagagaaaaaataataaattatttctaaaattaaaattcggatcatttgatcaaacatgtgatcatttaataaatttatgaaaaacgtcatatta 44234649  T
Q  313 aagttggattaatggtta 330  Q
    ||||||||||||||||||    
T  44234650 aagttggattaatggtta 44234667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 213 - 377
Target Start/End: Original strand, 47374730 - 47374901
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    ||||||| ||||||||||||||||||||| ||||| |||||  ||  ||| ||||||||||||||||| | |||||||||| || |||| ||||||||||    
T  47374730 taaccaaaagaagaaagaataaattatttataaaaataaaagatgtgtcacttgatcaagcatgtgagcacttaatgaattaataagagccgttagatta 47374829  T
Q  313 aagttggattaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatcccat 377  Q
    ||   | |||||||| || ||||||||||||||||       ||||||| ||||||||||||||||||||||    
T  47374830 aaacagtattaatggctaggatttggtgtcaaatttaatttgacaccttggtgtcatttgatcctatcccat 47374901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 226 - 335
Target Start/End: Complemental strand, 48302022 - 48301913
Alignment:
Q  226 aaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaat 325  Q
    ||||||||||||  ||||||||||||||||| | ||||||||||||||||||||| |||||| ||||||||||||||| | |||||||||||  ||||||    
T  48302022 aaagaataaattgattctaaaattaaaatttagatcatttgatcaagcatgtgagcatttaacgaattgatgagagacatcagattaaagtttaattaat 48301923  T
Q  326 ggttatgatt 335  Q
    | ||||||||    
T  48301922 gattatgatt 48301913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 213 - 384
Target Start/End: Complemental strand, 26213087 - 26212909
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    |||| |||||||||||||||| ||| |||||||||||||||  |||||||||| |||||  ||||||| | |||   ||||||| |||| |||| |||||    
T  26213087 taactaagagaagaaagaatagattgtttctaaaattaaaaggtggctcatttaatcaaatatgtgagcacttataaaattgattagagccgttggatta 26212988  T
Q  313 aagttggattaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatcccatatatata 384  Q
    ||  |  |||||||| || ||||||||||||||||       |||||||||||||||||||||||||||||||||||||    
T  26212987 aaactatattaatggataagatttggtgtcaaattttatttgacaccttagtgtcatttgatcctatcccatatatata 26212909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 223 - 330
Target Start/End: Original strand, 29859561 - 29859668
Alignment:
Q  223 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggatt 322  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||| |||||||||||||||| ||||| |  |||||||| || ||     
T  29859561 aagaaagaataaattatttttaaaattaaaatttgtctcatttgatcatgcatgtgagcatttaatgaattgatgggagacatcggattaaagatgaatg 29859660  T
Q  323 aatggtta 330  Q
    ||||||||    
T  29859661 aatggtta 29859668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 213 - 343
Target Start/End: Complemental strand, 47374213 - 47374083
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    ||||||| ||||||||||||||||||||||||||| |||||  ||| ||| ||||||||||||||||| | ||||||||||||||  || ||||||||||    
T  47374213 taaccaaaagaagaaagaataaattatttctaaaaataaaagatgggtcacttgatcaagcatgtgagcacttaatgaattgatggaagccgttagatta 47374114  T
Q  313 aagttggattaatggttatgatttggtgtca 343  Q
    ||  || |||||||| ||  |||||||||||    
T  47374113 aaactgtattaatggctagaatttggtgtca 47374083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 221 - 385
Target Start/End: Complemental strand, 42986917 - 42986746
Alignment:
Q  221 agaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttgga 320  Q
    ||||||||||||||||||||| |||||||||||  ||| |||||||||||| |||||||| | |||||||||| ||||||| | ||||||||||   | |    
T  42986917 agaagaaagaataaattatttttaaaattaaaaggtggatcatttgatcaaacatgtgagcacttaatgaattaatgagagccattagattaaatgagta 42986818  T
Q  321 ttaatggttatgatttggtgtcaaa-------ttacaccttagtgtcatttgatcctatcccatatatataa 385  Q
    ||||||  || ||||||||||||||       ||||| ||| ||||||||||||| |||| |||||||||||    
T  42986817 ttaatgactaagatttggtgtcaaatttaattttacatcttggtgtcatttgatcatatctcatatatataa 42986746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 213 - 375
Target Start/End: Original strand, 7012922 - 7013091
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    ||||||| ||||||||||||||||||||||||||| |||||  ||| ||| ||||||||||||||||| | | ||||| || ||  ||| ||||||||||    
T  7012922 taaccaaaagaagaaagaataaattatttctaaaaataaaaagtgggtcacttgatcaagcatgtgagcactcaatgagtttatcggagccgttagatta 7013021  T
Q  313 aagttggattaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatccc 375  Q
    ||   | |||||||| || ||||||||||||||||       ||||||| ||||||||||||||||||||    
T  7013022 aaaccgtattaatggctaggatttggtgtcaaatttaatttgacaccttggtgtcatttgatcctatccc 7013091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 213 - 384
Target Start/End: Complemental strand, 5496714 - 5496535
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    ||||||| ||||||||||||||||||||||||||| |||||  ||  ||| || |||| ||||||||| | |||||||||||||| ||| ||||| ||||    
T  5496714 taaccaaaagaagaaagaataaattatttctaaaaataaaagatgagtcacttaatcaggcatgtgagcacttaatgaattgatgggagccgttatatta 5496615  T
Q  313 aagttggattaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatccc-atatatata 384  Q
    ||   | |||||||| ||  |||||||||||||||       ||||||| |||||||||||||||||||| |||||||||    
T  5496614 aaaccgtattaatggctagaatttggtgtcaaatttaatttgacaccttggtgtcatttgatcctatccctatatatata 5496535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 52 - 148
Target Start/End: Original strand, 44234362 - 44234459
Alignment:
Q  52 catgaactcaa-gaattatatgatccatcaaatgaaagagtagctaatacaaacaggatacaaagataatccaacaaaaattagtaaatagaatctct 148  Q
    ||||||||||| |||| |||| ||||| ||||||||||||||   |||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  44234362 catgaactcaaagaataatatcatccaacaaatgaaagagtaatcaatacaaacatgatacaaagatgatccaacaaaaattagtaaatagaatctct 44234459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 223 - 384
Target Start/End: Complemental strand, 5216718 - 5216551
Alignment:
Q  223 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggatt 322  Q
    |||||| ||||||||||||||||||||||| ||||  | ||||||  ||||||||||  |||||||||||||| | |||||||  |||||| |||| |||    
T  5216718 aagaaataataaattatttctaaaattaaattttgaattatttga--aagcatgtgaacatttaatgaattgacgggagacgtcggattaaggttgaatt 5216621  T
Q  323 aatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatccc-atatatata 384  Q
    |||||||| |||||||| |||||||       ||||| | |||||||||||||||||||| |||||||||    
T  5216620 aatggttaagatttggtatcaaatttaatttgacaccatggtgtcatttgatcctatccctatatatata 5216551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 227 - 347
Target Start/End: Complemental strand, 10716826 - 10716706
Alignment:
Q  227 aagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaatg 326  Q
    ||||||||||||||||||||| |||||  ||| ||| ||||||||||||||||| | |||||||||||||| ||| |||||||||||| | | |||||||    
T  10716826 aagaataaattatttctaaaaataaaagatgggtcacttgatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaatcgtattaatg 10716727  T
Q  327 gttatgatttggtgtcaaatt 347  Q
     |||  ||||||||| |||||    
T  10716726 attagaatttggtgttaaatt 10716706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 213 - 384
Target Start/End: Complemental strand, 39847976 - 39847799
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    ||||||| ||||||||||||||||||||| ||||| |||||  ||| ||| ||||||||||||||||  | ||||||| || ||||||| ||||||||||    
T  39847976 taaccaaaagaagaaagaataaattatttttaaaaataaaaggtgggtcacttgatcaagcatgtgaacacttaatgagtttatgagagccgttagatta 39847877  T
Q  313 aagttggattaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatcccatatatata 384  Q
    ||   | |||||||  || ||||||||||||||||       ||| ||| ||||||||||||||||||| |||||||||    
T  39847876 aaaccgtattaatgactaggatttggtgtcaaatttaatttgaca-cttggtgtcatttgatcctatcctatatatata 39847799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 213 - 347
Target Start/End: Complemental strand, 7012132 - 7011999
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    ||||||| ||||||| ||||||||||||||||||| |||||  ||| ||| ||||||||||||||||| | ||||||| || ||| ||| ||||||||||    
T  7012132 taaccaaaagaagaa-gaataaattatttctaaaaataaaaggtgggtcacttgatcaagcatgtgagcacttaatgagtttatgggagccgttagatta 7012034  T
Q  313 aagttggattaatggttatgatttggtgtcaaatt 347  Q
    ||   | |||||||| || ||||||||||||||||    
T  7012033 aacccgaattaatggctaggatttggtgtcaaatt 7011999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 226 - 347
Target Start/End: Original strand, 42986982 - 42987103
Alignment:
Q  226 aaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaat 325  Q
    ||||||||||||||||||||||||||||  ||| ||| ||||||||||||||||  | |||||||||||||| ||  | ||||||||||  |  ||||||    
T  42986982 aaagaataaattatttctaaaattaaaaggtgggtcacttgatcaagcatgtgaacacttaatgaattgatgtgaacctttagattaaaactatattaat 42987081  T
Q  326 ggttatgatttggtgtcaaatt 347  Q
    ||||| |||||| |||||||||    
T  42987082 ggttaggatttgatgtcaaatt 42987103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 239 - 346
Target Start/End: Original strand, 10716838 - 10716945
Alignment:
Q  239 tttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaatggttatgatttgg 338  Q
    ||||||||| |||||| ||| ||| ||||||||||||||||| | |||||||||||||| |||  |||||||||||   | |||||||| || |||||||    
T  10716838 tttctaaaaataaaatatgggtcacttgatcaagcatgtgagcacttaatgaattgatgcgagctgttagattaaaaaggtattaatggctaggatttgg 10716937  T
Q  339 tgtcaaat 346  Q
    ||||||||    
T  10716938 tgtcaaat 10716945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 48 - 138
Target Start/End: Complemental strand, 27651726 - 27651636
Alignment:
Q  48 gcagcatgaactcaagaattatatgatccatcaaatgaaagagtagctaatacaaacaggatacaaagataatccaacaaaaattagtaaa 138  Q
    |||||||||||||||||||  ||  ||||| |||||||||||||||  |||||||| ||||||||||||| ||  |||||| |||||||||    
T  27651726 gcagcatgaactcaagaatactaccatccaacaaatgaaagagtagtcaatacaaagaggatacaaagatgattgaacaaagattagtaaa 27651636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 14886424 - 14886355
Alignment:
Q  79 caaatgaaagagtagctaatacaaacaggatacaaagataatccaacaaaaattagtaaatagaatctct 148  Q
    |||||||||||||||| |||||||| |||||||| |||| ||  |||||| |||||||||||||||||||    
T  14886424 caaatgaaagagtagccaatacaaagaggatacagagatgattgaacaaagattagtaaatagaatctct 14886355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 5497205 - 5497271
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtga 279  Q
    ||||||| ||||||||||||||||||||||||||| |||||  ||  ||| |||||||| |||||||    
T  5497205 taaccaaaagaagaaagaataaattatttctaaaaataaaagatgagtcacttgatcaaacatgtga 5497271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 267 - 343
Target Start/End: Complemental strand, 51445583 - 51445507
Alignment:
Q  267 atcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaatggttatgatttggtgtca 343  Q
    |||||||||||||| | |||| |||||||| | || |||||||||||| ||  |||||||| || ||||||||||||    
T  51445583 atcaagcatgtgagcacttaacgaattgattaaagccgttagattaaaattatattaatggataagatttggtgtca 51445507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 271
Target Start/End: Complemental strand, 51447020 - 51446962
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaa 271  Q
    |||| |||||||||||||||| ||| |||||||||||||||  || ||||||| |||||    
T  51447020 taactaagagaagaaagaatagattgtttctaaaattaaaaggtgactcatttaatcaa 51446962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 242; Significance: 1e-133; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-133
Query Start/End: Original strand, 48 - 347
Target Start/End: Original strand, 36731805 - 36732105
Alignment:
Q  48 gcagcatgaactcaagaattatatgatccatcaaatgaaagagtagctaatacaaacaggatacaaagataatccaacaaaaattagtaaatagaatctc 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  36731805 gcagcatgaactcaagaattatatgatccatcaaatgaaagagtagttaatacaaacaag-tacaaagataatccaacaaaaattagtaaatagaatctc 36731903  T
Q  148 tnnnnnnntagtgggagaaatcaaatggcaatcattagtgcaaaatataacgaaaatggtaagta--taaccaagagaagaaagaataaattatttctaa 245  Q
    |       |||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||    
T  36731904 taaaaaaatagtgggagaaatcaaatggcaatgattggtgcaaaatataacaaaaatggtaagtaattaaccaagagaagaaagaataaattatttctaa 36732003  T
Q  246 aattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaatggttatgatttggtgtcaaa 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36732004 aattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaatggttatgatttggtgtcaaa 36732103  T
Q  346 tt 347  Q
    ||    
T  36732104 tt 36732105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 217 - 384
Target Start/End: Original strand, 39861542 - 39861716
Alignment:
Q  217 caagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagt 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  39861542 caagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcacgtgagaatttaatgaattgatgagagacgttagattaaagt 39861641  T
Q  317 tggattaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatcccatatatata 384  Q
    |||||||||||||| |||||| ||| |||||       ||||||| |||||||||||||||||||||||||||||    
T  39861642 tggattaatggttaggatttgatgttaaatttaatttgacaccttggtgtcatttgatcctatcccatatatata 39861716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 8 - 190
Target Start/End: Original strand, 39861363 - 39861544
Alignment:
Q  8 acaagaatattagcagcattttgtcaacnnnnnnnnnntggcagcatgaactcaagaattatatgatccatcaaatgaaagagtagctaatacaaacagg 107  Q
    ||||||||||||||||||||||||||||          | ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  39861363 acaagaatattagcagcattttgtcaacaaaacaaaa-tagcagcatgaactcaagaattatatgatccattaaatgaaagagcagctaatacaaacagg 39861461  T
Q  108 atacaaagataatccaacaaaaattagtaaatagaatctctnnnnnnntagtgggagaaatcaaatggcaatcattagtgcaa 190  Q
    |||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||| ||||||    
T  39861462 atacaaagataatccaacaaaaattagtaaatagaatctctaaaaaaatagtgggagaaatcaaatggcaatcattggtgcaa 39861544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 102; E-Value: 5e-50
Query Start/End: Original strand, 91 - 347
Target Start/End: Original strand, 5882166 - 5882432
Alignment:
Q  91 tagctaatacaaacaggatacaaagataatccaacaaaaattagtaaatagaatctctnnnnnnntagtgggagaaatcaaatggcaatcat-------- 182  Q
    |||| |||| ||||| ||||||||||||| ||||||||||||||||||||||||||||           |||||||||||||||||||||||            
T  5882166 tagccaatataaacatgatacaaagataagccaacaaaaattagtaaatagaatctctacaaaatagaagggagaaatcaaatggcaatcatctatctat 5882265  T
Q  183 tagtgcaaaatataacgaaaatggtaagtat--aaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgag 280  Q
    |  ||||||||||||| |||| || || |||  |||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  5882266 tgatgcaaaatataacaaaaacgggaactattcaaccaagaaaagaaagaataaattatttttaaaattaaaatttggatcatttgatcaagcatgtgag 5882365  T
Q  281 aatttaatgaattgatgagagacgttagattaaagttggattaatggttatgatttggtgtcaaatt 347  Q
     ||||||||||||||||||  |||   |||||| |||||||||||||||| ||||| ||||||||||    
T  5882366 catttaatgaattgatgagcaacggcggattaatgttggattaatggttaggattttgtgtcaaatt 5882432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 90; E-Value: 7e-43
Query Start/End: Original strand, 213 - 384
Target Start/End: Complemental strand, 25128755 - 25128576
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    |||||||||||||||||||||  ||||||||||||||||||||||  |||| |||||||| || |||  ||||||||||||||||||||||||  |||||    
T  25128755 taaccaagagaagaaagaatattttatttctaaaattaaaatttgcatcatatgatcaagtatttgaatatttaatgaattgatgagagacgtcggatta 25128656  T
Q  313 aagttggattaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatccc-atatatata 384  Q
    ||||| |||||||||||||||||||||||||||||       ||||||| ||||||||||||| |||||| |||||||||    
T  25128655 aagtttgattaatggttatgatttggtgtcaaatttaatttgacaccttggtgtcatttgatcttatccctatatatata 25128576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 81; E-Value: 2e-37
Query Start/End: Original strand, 223 - 347
Target Start/End: Complemental strand, 17450684 - 17450561
Alignment:
Q  223 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggatt 322  Q
    ||||||||||||||| ||||||||||||||| || | | ||||||| ||||||||||| ||||||||||||||||||||||||  ||||||||||| |||    
T  17450684 aagaaagaataaattgtttctaaaattaaaaattagataatttgat-aagcatgtgagcatttaatgaattgatgagagacgtcggattaaagttgaatt 17450586  T
Q  323 aatggttatgatttggtgtcaaatt 347  Q
    |||||||||||||||||||||||||    
T  17450585 aatggttatgatttggtgtcaaatt 17450561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 213 - 330
Target Start/End: Original strand, 25191396 - 25191513
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    |||| ||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||  ||||| |||||||||||| |||||  |||||    
T  25191396 taactaagagaagaaagaataaattatttctaaaattaaaatttgaatcagttgatcaagcatgtgaacatttactgaattgatgagggacgtcggatta 25191495  T
Q  313 aagttggattaatggtta 330  Q
    ||||||||||||||||||    
T  25191496 aagttggattaatggtta 25191513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 186 - 313
Target Start/End: Original strand, 25129224 - 25129353
Alignment:
Q  186 tgcaaaatataacgaaaatggtaagtat--aaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaat 283  Q
    ||||||||||||| ||||||| || ||   |||||||| |||||| ||||||||||||||||||||||||||||| |||||| ||||| |||||||| ||    
T  25129224 tgcaaaatataacaaaaatggaaactaatcaaccaagaaaagaaataataaattatttctaaaattaaaatttggatcatttcatcaaacatgtgagcat 25129323  T
Q  284 ttaatgaattgatgagagacgttagattaa 313  Q
    ||||||||||||||||||||||| ||||||    
T  25129324 ttaatgaattgatgagagacgttggattaa 25129353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 214 - 313
Target Start/End: Complemental strand, 5881300 - 5881201
Alignment:
Q  214 aaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaa 313  Q
    |||||||| ||||||||||| |||||||||||||||||| ||||| |||||| |||||||||||||| ||||||||||||||||||||||||| ||||||    
T  5881300 aaccaagaaaagaaagaatacattatttctaaaattaaagtttggatcatttcatcaagcatgtgagcatttaatgaattgatgagagacgttggattaa 5881201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 213 - 347
Target Start/End: Complemental strand, 29361983 - 29361849
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    ||||||| ||||||||||||||||||||||||||| |||||  ||| ||| |||||||||||||| || | |||||||||||||| ||| ||||||||||    
T  29361983 taaccaaaagaagaaagaataaattatttctaaaaataaaagatgggtcacttgatcaagcatgttagcacttaatgaattgatgggagccgttagatta 29361884  T
Q  313 aagttggattaatggttatgatttggtgtcaaatt 347  Q
    ||   | |||||||| || ||| ||||||||||||    
T  29361883 aaaccgtattaatggctaggatctggtgtcaaatt 29361849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 223 - 348
Target Start/End: Complemental strand, 36731497 - 36731374
Alignment:
Q  223 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggatt 322  Q
    ||||||||||||||||||| |||||||||| ||||| | ||||||  |||||| |||  |||||||||||||||| |||||||  |||||| |||| |||    
T  36731497 aagaaagaataaattatttttaaaattaaattttggattatttga--aagcatatgaacatttaatgaattgatgggagacgtcggattaaggttgaatt 36731400  T
Q  323 aatggttatgatttggtgtcaaatta 348  Q
    |||||||| |||||||||||||||||    
T  36731399 aatggttaagatttggtgtcaaatta 36731374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 213 - 347
Target Start/End: Complemental strand, 29266331 - 29266197
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    ||||||| ||||||||||||||||||||||||||| |||||  ||| |||||||||||||||||| |  | ||||||| || ||| ||| ||||||||||    
T  29266331 taaccaaaagaagaaagaataaattatttctaaaaataaaaagtgggtcatttgatcaagcatgtaaatacttaatgagtttatgggagccgttagatta 29266232  T
Q  313 aagttggattaatggttatgatttggtgtcaaatt 347  Q
    || | | |||||| |||| |||||| |||||||||    
T  29266231 aaatcgtattaatagttaggatttgatgtcaaatt 29266197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 218 - 314
Target Start/End: Complemental strand, 37438059 - 37437963
Alignment:
Q  218 aagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaa 314  Q
    ||||||| ||||||||||||||||||||||||||||  ||| | ||||||||||  ||||||| || ||||||||||||| ||| ||||||||||||    
T  37438059 aagagaaaaaagaataaattatttctaaaattaaaagatggataatttgatcaaatatgtgagcatctaatgaattgatgggagccgttagattaaa 37437963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 223 - 336
Target Start/End: Complemental strand, 39861119 - 39861007
Alignment:
Q  223 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaa-agttggat 321  Q
    |||||||||||||||||| ||||||||||| ||||| | ||||||  ||||||||||| |||||||||||||||| |||||||  ||||||  |||| ||    
T  39861119 aagaaagaataaattattactaaaattaaattttggattatttga--aagcatgtgagcatttaatgaattgatgggagacgtcggattaatggttgaat 39861022  T
Q  322 taatggttatgattt 336  Q
    ||||||||| |||||    
T  39861021 taatggttaagattt 39861007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 221 - 347
Target Start/End: Original strand, 5332068 - 5332194
Alignment:
Q  221 agaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttgga 320  Q
    ||||||||||||||||||||||||||| |||||  ||  ||| |||||||||||||||||   ||||||| || ||| ||| ||||||||||||   | |    
T  5332068 agaagaaagaataaattatttctaaaaataaaaggtgagtcacttgatcaagcatgtgagctcttaatgagtttatgggagccgttagattaaaaccgta 5332167  T
Q  321 ttaatggttatgatttggtgtcaaatt 347  Q
    ||||||| || ||||||||||||||||    
T  5332168 ttaatggctaggatttggtgtcaaatt 5332194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 213 - 347
Target Start/End: Original strand, 29267744 - 29267878
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    ||||||| ||||||||||||||||||||||||| | |||||  | | ||| ||||||||||||||||| | ||||||| || ||||||  ||||||||||    
T  29267744 taaccaaaagaagaaagaataaattatttctaataataaaaggtagatcacttgatcaagcatgtgagcacttaatgagtttatgagaatcgttagatta 29267843  T
Q  313 aagttggattaatggttatgatttggtgtcaaatt 347  Q
    ||     |||||||| || ||||||||||||||||    
T  29267844 aaaccatattaatggctaagatttggtgtcaaatt 29267878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 58 - 139
Target Start/End: Original strand, 25187977 - 25188058
Alignment:
Q  58 ctcaagaattatatgatccatcaaatgaaagagtagctaatacaaacaggatacaaagataatccaacaaaaattagtaaat 139  Q
    ||||||||| |||| ||||| ||||||||||||| || |||||||||||||||||||||  |||||| ||||||||||||||    
T  25187977 ctcaagaataatattatccaacaaatgaaagagtggccaatacaaacaggatacaaagaagatccaagaaaaattagtaaat 25188058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 221 - 375
Target Start/End: Complemental strand, 5331055 - 5330894
Alignment:
Q  221 agaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttgga 320  Q
    |||||||||  |||||||||||||||| |||||  ||| ||| ||||||||||||||||| | ||||||| || ||| ||| ||||||||||||   | |    
T  5331055 agaagaaagtttaaattatttctaaaaataaaaggtgggtcacttgatcaagcatgtgagcacttaatgagtttatgggagccgttagattaaaaccgta 5330956  T
Q  321 ttaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatccc 375  Q
    ||||||| ||  |||||||||||||||       ||||||| |||||||||||||| |||||    
T  5330955 ttaatggctagaatttggtgtcaaatttaatttaacaccttggtgtcatttgatccgatccc 5330894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 292 - 347
Target Start/End: Original strand, 39130994 - 39131049
Alignment:
Q  292 ttgatgagagacgttagattaaagttggattaatggttatgatttggtgtcaaatt 347  Q
    ||||||||||||||  |||||||||| |||||||||||||||||||||||||||||    
T  39130994 ttgatgagagacgtcggattaaagtttgattaatggttatgatttggtgtcaaatt 39131049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 230 - 375
Target Start/End: Complemental strand, 42986798 - 42986646
Alignment:
Q  230 aataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaatggtt 329  Q
    |||||||||||| |||||||||||  ||| ||| |||||||| |||| ||| | |||||||||| ||||||| | ||| ||||||     |||||||| |    
T  42986798 aataaattatttataaaattaaaaggtgggtcacttgatcaaacatgcgagcacttaatgaattaatgagagccattaaattaaaacattattaatggct 42986699  T
Q  330 atgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatccc 375  Q
    ||||||||||||||||||       |||| || ||||||||||||||||||||    
T  42986698 atgatttggtgtcaaatttaatttgacactttggtgtcatttgatcctatccc 42986646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 344
Target Start/End: Original strand, 42987383 - 42987495
Alignment:
Q  232 taaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaatggttat 331  Q
    |||||||||| |||||||||||  ||| ||| |||||||||||| |||| | |||||||||||||| ||  | ||||||||||  |  |||||| ||||     
T  42987383 taaattatttttaaaattaaaaggtgggtcacttgatcaagcatatgagcacttaatgaattgatgtgaacctttagattaaaactatattaatagttag 42987482  T
Q  332 gatttggtgtcaa 344  Q
    |||||||||||||    
T  42987483 gatttggtgtcaa 42987495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 119
Target Start/End: Original strand, 25129051 - 25129118
Alignment:
Q  52 catgaactcaagaattatatgatccatcaaatgaaagagtagctaatacaaacaggatacaaagataa 119  Q
    ||||||||||||||| |||  || || |||||||||| ||||| |||| ||||| |||||||||||||    
T  25129051 catgaactcaagaataataccatacaacaaatgaaagcgtagccaatataaacatgatacaaagataa 25129118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 332 - 384
Target Start/End: Original strand, 34654928 - 34654983
Alignment:
Q  332 gatttggtgtcaaatt---acaccttagtgtcatttgatcctatcccatatatata 384  Q
    |||||||||||||| |   ||||| | |||||||||||||||||||||||||||||    
T  34654928 gatttggtgtcaaaatttgacaccatggtgtcatttgatcctatcccatatatata 34654983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 158; Significance: 2e-83; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 158; E-Value: 2e-83
Query Start/End: Original strand, 48 - 384
Target Start/End: Original strand, 19653573 - 19653929
Alignment:
Q  48 gcagcatgaactcaagaattatatgatccatcaaatgaaagagtagctaatacaaacaggatacaaagataatccaacaaaaattagtaaatagaatctc 147  Q
    ||||| ||||||||||||| |||| ||| | |||||||||||||||| ||| ||| ||||||||| |||| ||||||||||||||| ||||||||||||     
T  19653573 gcagcttgaactcaagaataatatcatctaacaaatgaaagagtagccaatgcaatcaggatacatagatgatccaacaaaaattaataaatagaatctt 19653672  T
Q  148 tnnnnnnn--tagt-gggagaaatcaaatggcaatcat-------tag-tgcaaaatataacgaaaatggtaagta--taaccaagagaagaaagaataa 234  Q
    |         |||| |||||||||||||||||||||||       | | ||||||||||||||| |||||||||||  ||||||||||||||||||||||    
T  19653673 taaaaaagaatagtagggagaaatcaaatggcaatcatatacctatggatgcaaaatataacgacaatggtaagtaattaaccaagagaagaaagaataa 19653772  T
Q  235 attatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaatggttatgat 334  Q
    |||||||||||||||||||||||| ||||||||| || ||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||    
T  19653773 attatttctaaaattaaaatttggatcatttgattaaacatatgagcatttaatgaattgatgagagacgtcagattaaagttggattaatggttaggat 19653872  T
Q  335 ttggtgtcaaatt-------acaccttagtgtcatttgatcctatcccatatatata 384  Q
    |||||||||||||       ||||||| |||||||||||||||||||||||||||||    
T  19653873 ttggtgtcaaatttaatttgacaccttggtgtcatttgatcctatcccatatatata 19653929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 223 - 384
Target Start/End: Original strand, 8993481 - 8993649
Alignment:
Q  223 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggatt 322  Q
    ||||||||||||||| |||||||||||||||||| | |||||||||||| |||||||| |||||| |||| ||||||||||||| ||||||||||| |||    
T  8993481 aagaaagaataaattgtttctaaaattaaaatttagatcatttgatcaaacatgtgagcatttaaagaatggatgagagacgttggattaaagttgaatt 8993580  T
Q  323 aatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatcccatatatata 384  Q
    |||||||||||||||||||||||||       ||||| | |||||||||||||||||||||||||||||    
T  8993581 aatggttatgatttggtgtcaaatttaatttgacaccgtggtgtcatttgatcctatcccatatatata 8993649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 223 - 384
Target Start/End: Original strand, 9017928 - 9018096
Alignment:
Q  223 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggatt 322  Q
    ||||||||||||||| |||||||||||||||||| | |||||||||||| |||||||| |||||| |||| ||||||||||||| ||||||||||| |||    
T  9017928 aagaaagaataaattgtttctaaaattaaaatttagatcatttgatcaaacatgtgagcatttaaagaatggatgagagacgttggattaaagttgaatt 9018027  T
Q  323 aatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatcccatatatata 384  Q
    |||||||||||||||||||||||||       ||||| | |||||||||||||||||||||||||||||    
T  9018028 aatggttatgatttggtgtcaaatttaatttgacaccgtggtgtcatttgatcctatcccatatatata 9018096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 225 - 384
Target Start/End: Complemental strand, 8993064 - 8992897
Alignment:
Q  225 gaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaa 324  Q
    ||||||||||||| |||||||||||||||||| | | ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||    
T  8993064 gaaagaataaattgtttctaaaattaaaatttagataatttgatcaagcatgtgagtatttaatgaattgatgagagacgttggattaaagttgaattaa 8992965  T
Q  325 tggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatccc-atatatata 384  Q
    |||||||||||| ||||||||||       ||||| | |||||||||||||||||||| |||||||||    
T  8992964 tggttatgatttagtgtcaaatttaatttgacaccatggtgtcatttgatcctatccctatatatata 8992897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 225 - 384
Target Start/End: Complemental strand, 9017511 - 9017344
Alignment:
Q  225 gaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaa 324  Q
    ||||||||||||| |||||||||||||||||| | | ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||    
T  9017511 gaaagaataaattgtttctaaaattaaaatttagataatttgatcaagcatgtgagtatttaatgaattgatgagagacgttggattaaagttgaattaa 9017412  T
Q  325 tggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatccc-atatatata 384  Q
    |||||||||||| ||||||||||       ||||| | |||||||||||||||||||| |||||||||    
T  9017411 tggttatgatttagtgtcaaatttaatttgacaccatggtgtcatttgatcctatccctatatatata 9017344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 90; E-Value: 7e-43
Query Start/End: Original strand, 746 - 867
Target Start/End: Complemental strand, 28178112 - 28177991
Alignment:
Q  746 tgtaaggtcatcactcatcatataagagtgcaatttcacaattttaaagaattttaacaattttaaagcactgattcctttcaaaattcattttgctaca 845  Q
    ||||||||||| ||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||| ||||||  |||||||||||||||||||||    
T  28178112 tgtaaggtcataactcatcatataaaagtgtaatttcacaattttaaagaaatttaacaattttaaagcaatgattcacttcaaaattcattttgctaca 28178013  T
Q  846 aattgaagtgcattgaaacata 867  Q
    |||||||||| |||||||||||    
T  28178012 aattgaagtgaattgaaacata 28177991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 81; E-Value: 2e-37
Query Start/End: Original strand, 223 - 385
Target Start/End: Original strand, 18649796 - 18649965
Alignment:
Q  223 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggatt 322  Q
    ||||||||||||||| |||||||||||||||||| | | ||||| | ||||||||||| ||| ||||||||||||||||||||  ||||||||||| |||    
T  18649796 aagaaagaataaattgtttctaaaattaaaatttagataatttgtt-aagcatgtgagcattcaatgaattgatgagagacgtcggattaaagttgaatt 18649894  T
Q  323 aatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatccc-atatatataa 385  Q
    |||||||||||||||||||||||||       ||||| | |||||||||||||||||||| ||||||||||    
T  18649895 aatggttatgatttggtgtcaaatttaatttgacaccatggtgtcatttgatcctatccctatatatataa 18649965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 223 - 348
Target Start/End: Complemental strand, 32907584 - 32907461
Alignment:
Q  223 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggatt 322  Q
    |||||||||||||||||||||||||||||| ||||| | ||||||  |||||||||||  ||||||||||||||| ||||||| ||||||| |||| |||    
T  32907584 aagaaagaataaattatttctaaaattaaattttggattatttga--aagcatgtgagcctttaatgaattgatgggagacgtcagattaaggttgaatt 32907487  T
Q  323 aatggttatgatttggtgtcaaatta 348  Q
    |||||||| |||||||||||||||||    
T  32907486 aatggttaagatttggtgtcaaatta 32907461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 68; E-Value: 9e-30
Query Start/End: Original strand, 401 - 534
Target Start/End: Complemental strand, 28241996 - 28241862
Alignment:
Q  401 aatatcaagaatcatg-aatttagtctaacataaatatcaaagtagccaatggttcaaataaa-attagattataaatgtaaaatcttcttgaaatatat 498  Q
    ||||||||||| | || ||| |||||||||||||||||||||||||||||||||||| || |  |||||| |||||| ||||||||||||||||||||||    
T  28241996 aatatcaagaaccgtgcaatctagtctaacataaatatcaaagtagccaatggttcagattattattagactataaa-gtaaaatcttcttgaaatatat 28241898  T
Q  499 atcaacgtgccaggaccagtcacatcattgctaata 534  Q
    |||||| | |||| |||||||||||||||| |||||    
T  28241897 atcaacataccagaaccagtcacatcattgataata 28241862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 753 - 843
Target Start/End: Complemental strand, 28221142 - 28221052
Alignment:
Q  753 tcatcactcatcatataagagtgcaatttcacaattttaaagaattttaacaattttaaagcactgattcctttcaaaattcattttgcta 843  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||  || ||||||||||||||||    
T  28221142 tcatcactaatcatataaaagtgcaatttcacaattttaaagaattttaacaaatttaaagcactgattcacttaaaaattcattttgcta 28221052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 262 - 347
Target Start/End: Original strand, 9280828 - 9280913
Alignment:
Q  262 atttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaatggttatgatttggtgtcaaatt 347  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||  ||||||||||||||||    
T  9280828 atttgatcaagcatgtgagaatttaataaattgatgagagactttagattaaagttggattaatgatttggatttggtgtcaaatt 9280913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 272 - 375
Target Start/End: Complemental strand, 19651181 - 19651071
Alignment:
Q  272 gcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaatggttatgatttggtgtcaaatt-------acaccttagtgtcattt 364  Q
    ||||||||| |||||||||||| ||||||||||| |||||||||||||||||||| ||| ||||||||||||||||       ||||||| |||||||||    
T  19651181 gcatgtgagcatttaatgaattaatgagagacgtcagattaaagttggattaatgattaggatttggtgtcaaatttaatttgacaccttggtgtcattt 19651082  T
Q  365 gatcctatccc 375  Q
    |||||||||||    
T  19651081 gatcctatccc 19651071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 508 - 571
Target Start/End: Complemental strand, 28225022 - 28224959
Alignment:
Q  508 ccaggaccagtcacatcattgctaatattctagaatctatgcaagactgcctccaatgttgaat 571  Q
    |||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  28225022 ccagcaccagtcacatcattgctaatattcaacaatctatgcaagactgcctccaatgttgaat 28224959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 572 - 622
Target Start/End: Complemental strand, 28224801 - 28224751
Alignment:
Q  572 aacatgaatttcctaacggatatcaggacaaaatgtttgtagggttatgtc 622  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  28224801 aacatgaatttcctaacgaatatcaggacaaaatgtttgtagggttatgtc 28224751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 8993180 - 8993111
Alignment:
Q  79 caaatgaaagagtagctaatacaaacaggatacaaagataatccaacaaaaattagtaaatagaatctct 148  Q
    |||||||||||||||| |||||||| ||||||||||||| ||  |||||| |||||||||||||||||||    
T  8993180 caaatgaaagagtagccaatacaaagaggatacaaagatgattgaacaaagattagtaaatagaatctct 8993111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 9017627 - 9017558
Alignment:
Q  79 caaatgaaagagtagctaatacaaacaggatacaaagataatccaacaaaaattagtaaatagaatctct 148  Q
    |||||||||||||||| |||||||| ||||||||||||| ||  |||||| |||||||||||||||||||    
T  9017627 caaatgaaagagtagccaatacaaagaggatacaaagatgattgaacaaagattagtaaatagaatctct 9017558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 401 - 453
Target Start/End: Complemental strand, 28225092 - 28225040
Alignment:
Q  401 aatatcaagaatcatgaatttagtctaacataaatatcaaagtagccaatggt 453  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  28225092 aatatcaagaatcatgaatctagtctaacataaatatcaaagtagcaaatggt 28225040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 401 - 496
Target Start/End: Complemental strand, 28180304 - 28180210
Alignment:
Q  401 aatatcaagaatcatg-aatttagtctaacataaatatcaaagtagccaatggttcaaataaaattagattataaatgtaaaatcttcttgaaatat 496  Q
    ||||||||||| | || ||| |||||||||||||||||||||||||||||||||||| ||  ||||||| ||| |||||||||||| || |||||||    
T  28180304 aatatcaagaaccgtgcaatctagtctaacataaatatcaaagtagccaatggttcagat-taattagactat-aatgtaaaatctactcgaaatat 28180210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 679 - 730
Target Start/End: Complemental strand, 28156336 - 28156285
Alignment:
Q  679 attgaaaacatactaaaattggtttttagccaactaatgcaacatgattcat 730  Q
    ||||||||||||| ||| |||||||||| |||||||||||||| ||||||||    
T  28156336 attgaaaacatacgaaagttggtttttatccaactaatgcaacttgattcat 28156285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 747 - 789
Target Start/End: Complemental strand, 28224218 - 28224176
Alignment:
Q  747 gtaaggtcatcactcatcatataagagtgcaatttcacaattt 789  Q
    |||||||||||||||||||||||| |||||||||||| |||||    
T  28224218 gtaaggtcatcactcatcatataaaagtgcaatttcaaaattt 28224176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 314
Target Start/End: Original strand, 18154351 - 18154451
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    |||||||||||||||| || ||||||||||| |||||||||  | | | |||||| ||| |||||||| | ||||||||||||||  |  ||||||||||    
T  18154351 taaccaagagaagaaaaaaaaaattatttct-aaattaaaaggttgattatttgaccaaacatgtgagcacttaatgaattgatggaaaccgttagatta 18154449  T
Q  313 aa 314  Q
    ||    
T  18154450 aa 18154451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 635 - 685
Target Start/End: Complemental strand, 28224712 - 28224660
Alignment:
Q  635 ttttcaatcatggaacatggaaggaaacacctcat--aaaacctttattgaaa 685  Q
    |||||||| ||||||||||||||||||||||||||  ||||||||||| ||||    
T  28224712 ttttcaattatggaacatggaaggaaacacctcattaaaaacctttatagaaa 28224660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 676 - 710
Target Start/End: Complemental strand, 28224649 - 28224615
Alignment:
Q  676 tttattgaaaacatactaaaattggtttttagcca 710  Q
    |||||||||||||||| ||||||||||||||||||    
T  28224649 tttattgaaaacataccaaaattggtttttagcca 28224615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 130; Significance: 9e-67; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 9e-67
Query Start/End: Original strand, 52 - 379
Target Start/End: Original strand, 28908366 - 28908710
Alignment:
Q  52 catgaactcaagaattatatgatccatcaaatgaaagagtagctaatacaaacaggatacaaagataatccaacaaaaattagtaaatagaatctctnnn 151  Q
    ||||||||||||||| |||  || || |||||||||| ||||| |||| ||||| |||||||||||||  |||||||||||||||||||||||||||       
T  28908366 catgaactcaagaataatacaatacaacaaatgaaagcgtagccaatataaacatgatacaaagataagacaacaaaaattagtaaatagaatctctaca 28908465  T
Q  152 nnnntagt-gggagaaatcaaatggcaatc--------attagtgcaaaatataacgaaaatggtaagtat--aaccaagagaagaaagaataaattatt 240  Q
        |||| |||||||||||||||||||||        ||| |||||||||||||| ||||||| || |||  |||||||| ||||||||||||||||||    
T  28908466 aaa-tagtagggagaaatcaaatggcaatcctctatctattggtgcaaaatataacaaaaatgggaactattcaaccaagaaaagaaagaataaattatt 28908564  T
Q  241 tctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaatggttatgatttggtg 340  Q
    |||||||||||||||||| | ||||||||||||||||||| ||||||| ||||||||||| ||||   ||||| ||||||||||||||||  |||| |||    
T  28908565 tctaaaattaaaatttggataatttgatcaagcatgtgagcatttaatcaattgatgagaaacgtcgaattaatgttggattaatggttagaattttgtg 28908664  T
Q  341 tcaaatt-------acaccttagtgtcatttgatcctatcccatat 379  Q
    |||||||       |||||||||||| |||||||||||||||||||    
T  28908665 tcaaatttaatttgacaccttagtgttatttgatcctatcccatat 28908710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 213 - 347
Target Start/End: Complemental strand, 51827731 - 51827597
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    |||||||||||||| ||||||  ||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||| ||||||||||  |||||    
T  51827731 taaccaagagaagatagaatattttatttctaaaattaaaatttgcatcatttgatcaagcatgtgagcatttaatgaattgttgagagacgtcggatta 51827632  T
Q  313 aagttggattaatggttatgatttggtgtcaaatt 347  Q
    |||||||||||||||||||||||||||||||||||    
T  51827631 aagttggattaatggttatgatttggtgtcaaatt 51827597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 52 - 384
Target Start/End: Original strand, 30834147 - 30834496
Alignment:
Q  52 catgaactcaagaattatatgatccatcaaatgaaagagtagctaatacaaacaggatacaaagataatccaacaaaaattagtaaatagaatctctnnn 151  Q
    ||||||||||||| | |||  || || |||||||||| ||||| |||| ||||| ||||| |||||||  ||||||||||||  |||||||||||||       
T  30834147 catgaactcaagagtaatacaatacaacaaatgaaagcgtagccaatataaacatgatacgaagataagtcaacaaaaattaacaaatagaatctctaca 30834246  T
Q  152 nnnntagt-gggagaaatcaaatggcaatcat-------tag-tgcaaaatataacgaaaatggtaagtat--aaccaagagaagaaagaataaattatt 240  Q
        |||| ||||||||||||||||||| |||       ||| ||||||||||||| ||||||| || |||  |||||||| ||||||||||||||||||    
T  30834247 aaa-tagtagggagaaatcaaatggcaaccatctatctataggtgcaaaatataacaaaaatgggaactattcaaccaagaaaagaaagaataaattatt 30834345  T
Q  241 tctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaatggttatgatttggtg 340  Q
    |||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||| || |  | |||| |||| ||||||||||| |||||  ||    
T  30834346 tctaaaattaaaatttggataatttgatcaagcatgtgagtatttaatgaattgatgagaaacatcgggttaatgttgaattaatggttaggatttaatg 30834445  T
Q  341 tcaaatt-------acaccttagtgtcatttgatcctatcccatatatata 384  Q
    |||||||       | |||||  |||||||||||||||||| |||||||||    
T  30834446 tcaaatttaatttgataccttgatgtcatttgatcctatcctatatatata 30834496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 223 - 347
Target Start/End: Original strand, 41710093 - 41710217
Alignment:
Q  223 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggatt 322  Q
    ||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||    
T  41710093 aagaaagaataaattgtttctaaaattaaaatttagatcatttgatcaagcatgtgagcatttaatgaattgatgagagacgttggattaaagttgaatt 41710192  T
Q  323 aatggttatgatttggtgtcaaatt 347  Q
    |||| ||||||||||||||||||||    
T  41710193 aatgattatgatttggtgtcaaatt 41710217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 91; E-Value: 2e-43
Query Start/End: Original strand, 225 - 347
Target Start/End: Complemental strand, 41709676 - 41709554
Alignment:
Q  225 gaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaa 324  Q
    ||||||||||||| |||||||||||||||||| | | |||||||||| |||||||| |||||||||||||||||||||||| | ||||||||||||||||    
T  41709676 gaaagaataaattgtttctaaaattaaaatttagataatttgatcaaacatgtgagtatttaatgaattgatgagagacgtcatattaaagttggattaa 41709577  T
Q  325 tggttatgatttggtgtcaaatt 347  Q
    |||||||||||||||||||||||    
T  41709576 tggttatgatttggtgtcaaatt 41709554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 90; E-Value: 7e-43
Query Start/End: Original strand, 91 - 347
Target Start/End: Original strand, 51829240 - 51829506
Alignment:
Q  91 tagctaatacaaacaggatacaaagataatccaacaaaaattagtaaatagaatctctnnnnnnntagt-gggagaaatcaaatggcaatcat------- 182  Q
    |||| |||| ||||| |||||||||||||  || ||||||||| ||||||||||||||       |||| ||||||||| |||||||||||||           
T  51829240 tagccaatataaacaagatacaaagataaggcagcaaaaattaataaatagaatctctacaaaa-tagtagggagaaattaaatggcaatcatctatcta 51829338  T
Q  183 -tagtgcaaaatataacgaaaatggtaagtat--aaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtga 279  Q
     | |||||||||||||| |||| || || |||  |||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  51829339 ttggtgcaaaatataacaaaaacggaaactattcaaccaagaaaagaaagaataaattatttctaaaattaaaatttggatcatttcatcaagcatgtga 51829438  T
Q  280 gaatttaatgaattgatgagagacgttagattaaagttggattaatggttatgatttggtgtcaaatt 347  Q
    | ||||||||||||||||||  ||||  |||||| |||||||||||||| | |||||| | |||||||    
T  51829439 gcatttaatgaattgatgagcaacgtcggattaatgttggattaatggtaaggatttgatttcaaatt 51829506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 223 - 383
Target Start/End: Complemental strand, 53948818 - 53948651
Alignment:
Q  223 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggatt 322  Q
    ||||||||||||||| ||||||||||||||| || | | ||||||| |||||| |||| ||||||||||||||||||||||||  ||||||||||| |||    
T  53948818 aagaaagaataaattgtttctaaaattaaaaattagataatttgat-aagcatttgagcatttaatgaattgatgagagacgtcggattaaagttgaatt 53948720  T
Q  323 aatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatccc-atatatat 383  Q
    |||||||||||||||||||||||||       ||||| | |||||||||||||||||||| ||||||||    
T  53948719 aatggttatgatttggtgtcaaatttaatttgacaccatggtgtcatttgatcctatccctatatatat 53948651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 77; E-Value: 4e-35
Query Start/End: Original strand, 223 - 374
Target Start/End: Original strand, 53949211 - 53949368
Alignment:
Q  223 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggatt 322  Q
    ||||||||||||||| ||||||||||||||| || | | ||||| | ||||||||||| ||| ||||||||||||||||||||  ||||||||||| |||    
T  53949211 aagaaagaataaattgtttctaaaattaaaaattagataatttgtt-aagcatgtgagcattcaatgaattgatgagagacgtcggattaaagttgaatt 53949309  T
Q  323 aatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatcc 374  Q
    |||||||||||||||||||||||||       ||||||| |||||||||||||||||||    
T  53949310 aatggttatgatttggtgtcaaatttaatttgacaccttggtgtcatttgatcctatcc 53949368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 213 - 369
Target Start/End: Complemental strand, 28908054 - 28907892
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    |||| ||||||||||||| ||  ||||||||||||||||||||||  |||||| ||||| |||||||  ||||||||||||| ||||||||||  |||||    
T  28908054 taactaagagaagaaaga-tattttatttctaaaattaaaatttgcatcatttaatcaaacatgtgaccatttaatgaattgttgagagacgtcggatta 28907956  T
Q  313 aagttggattaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcc 369  Q
    |||||||||||||||||| |||||| |||||||||       ||||||||||||||||||||||    
T  28907955 aagttggattaatggttaggatttgatgtcaaatttaatttgacaccttagtgtcatttgatcc 28907892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 262 - 347
Target Start/End: Original strand, 43400704 - 43400789
Alignment:
Q  262 atttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaatggttatgatttggtgtcaaatt 347  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  43400704 atttgatcaagcatgtgagtatttaatgaattgatgagagacgttggattaaagttgaattaatggttatgatttggtgtcaaatt 43400789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 70; E-Value: 6e-31
Query Start/End: Original strand, 238 - 347
Target Start/End: Original strand, 53948485 - 53948593
Alignment:
Q  238 atttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaatggttatgatttg 337  Q
    ||||||||||| || |||||  ||||||||||||||||||||| |||||||||||||  ||||||||| |||||||||||||||||||||||| ||||||    
T  53948485 atttctaaaat-aatatttgcatcatttgatcaagcatgtgagcatttaatgaattgtagagagacgtcagattaaagttggattaatggttaggatttg 53948583  T
Q  338 gtgtcaaatt 347  Q
    ||||||||||    
T  53948584 gtgtcaaatt 53948593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 213 - 384
Target Start/End: Original strand, 47169044 - 47169222
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    ||||||| ||||||||||||||||||||||||||| |||||  ||| ||| ||||||||||||||||| | ||||||| || ||| ||| ||||||||||    
T  47169044 taaccaaaagaagaaagaataaattatttctaaaaataaaaggtgggtcacttgatcaagcatgtgagcacttaatgagtttatgggagccgttagatta 47169143  T
Q  313 aagttggattaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatcccatatatata 384  Q
    ||   | |||||||| || ||||||||||||||||       ||||||| ||||||||||||| ||||| |||||||||    
T  47169144 aaaccgtattaatggctaggatttggtgtcaaatttaatttgacaccttggtgtcatttgatcttatcctatatatata 47169222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 223 - 384
Target Start/End: Complemental strand, 38798410 - 38798244
Alignment:
Q  223 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggatt 322  Q
    ||||||||||||||| |||||||||||||||||| | | ||||| | ||||||| ||| ||| |||||||||||| || ||||  ||||||||||| |||    
T  38798410 aagaaagaataaattgtttctaaaattaaaatttagataatttgtt-aagcatgcgagcattcaatgaattgatgtgaaacgtcggattaaagttgaatt 38798312  T
Q  323 aatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatcccatatatata 384  Q
    ||||||||| |||||||||||||||       ||||| ||||||||||||||||||| |||||||||||    
T  38798311 aatggttataatttggtgtcaaatttaatttgacaccatagtgtcatttgatcctat-ccatatatata 38798244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 213 - 347
Target Start/End: Complemental strand, 53949507 - 53949373
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    ||||||| |||| |||||||||||||||||||||| |||||  ||| ||| ||||||||||||||||| | |||||||||||||| ||| ||||||||||    
T  53949507 taaccaaaagaaaaaagaataaattatttctaaaaataaaagatggatcacttgatcaagcatgtgagcacttaatgaattgatgggagccgttagatta 53949408  T
Q  313 aagttggattaatggttatgatttggtgtcaaatt 347  Q
    ||   | |||||||  |||||||||||||||||||    
T  53949407 aaaccgtattaatgactatgatttggtgtcaaatt 53949373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 217 - 384
Target Start/End: Complemental strand, 11238679 - 11238507
Alignment:
Q  217 caagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagt 316  Q
    |||||| ||||||||||||||||||||||||||||||  |   |||||| |  ||||||||||| | |||||||||||||| ||  |||||||| ||| |    
T  11238679 caagaggagaaagaataaattatttctaaaattaaaaagtatgtcatttaa--aagcatgtgagcacttaatgaattgatgggaaccgttagatgaaaat 11238582  T
Q  317 tggattaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatcccatatatata 384  Q
    || ||||||||||| ||||||||||||||||       |||||||  ||||||||||||||||||||||||||||    
T  11238581 tgtattaatggttaggatttggtgtcaaatttaatttgacaccttgatgtcatttgatcctatcccatatatata 11238507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 213 - 375
Target Start/End: Complemental strand, 47168056 - 47167887
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    ||||||| ||||||||||||||||||||||||||| |||||  ||| ||| ||||||||||||||||| | ||||||| || | ||||  ||||||||||    
T  47168056 taaccaaaagaagaaagaataaattatttctaaaaataaaaggtggatcacttgatcaagcatgtgagcacttaatgagtttacgagaaccgttagatta 47167957  T
Q  313 aagttggattaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatccc 375  Q
    ||   | |||||||| || ||||||||||||||||       ||||||| ||||||||||||||||||||    
T  47167956 aaaccgtattaatggctaggatttggtgtcaaatttaatttgacaccttggtgtcatttgatcctatccc 47167887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 213 - 305
Target Start/End: Complemental strand, 30833838 - 30833747
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgt 305  Q
    |||||||||||||||||| ||  ||||||||||||||||||||||  |||||||| |||||||||||| ||||||||||||| ||||||||||    
T  30833838 taaccaagagaagaaaga-tattttatttctaaaattaaaatttgcatcatttgaacaagcatgtgagcatttaatgaattgttgagagacgt 30833747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 221 - 384
Target Start/End: Original strand, 53949972 - 53950143
Alignment:
Q  221 agaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttgga 320  Q
    |||| ||| |||||||||||||||||| |||||  ||| ||| |||||||| |||||||| | ||||||||||||||  || |||||||||||    | |    
T  53949972 agaataaaaaataaattatttctaaaaataaaagatggatcacttgatcaaacatgtgagcacttaatgaattgatggaagccgttagattaagcccgta 53950071  T
Q  321 ttaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatccc-atatatata 384  Q
    ||||||| || ||||||||||||||||       ||||||| |||||||||||||||||||| |||||||||    
T  53950072 ttaatggctaggatttggtgtcaaatttaatttgacaccttggtgtcatttgatcctatccctatatatata 53950143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 213 - 347
Target Start/End: Complemental strand, 20202222 - 20202090
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    ||||||| ||||||||||||||||||||||||||| |||||  ||| ||| |||||||| ||||| || | |  |||||||||||  || ||||||||||    
T  20202222 taaccaaaagaagaaagaataaattatttctaaaaataaaagatggatcacttgatcaaacatgtaagcact--atgaattgatggaagccgttagatta 20202125  T
Q  313 aagttggattaatggttatgatttggtgtcaaatt 347  Q
    ||   | |||||||| ||  |||||||||||||||    
T  20202124 aaaccgtattaatggctagaatttggtgtcaaatt 20202090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 384
Target Start/End: Original strand, 20200524 - 20200674
Alignment:
Q  242 ctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaatggttatgatttggtgt 341  Q
    |||||| |||||  ||| ||| || |||||||||||||  | ||| |||||||||| ||| ||||||||||||   | |||||||| || ||||||||||    
T  20200524 ctaaaaataaaagatgggtcacttaatcaagcatgtgaacacttagtgaattgatgggagccgttagattaaaaccgtattaatggctaggatttggtgt 20200623  T
Q  342 caaatt-------acaccttagtgtcatttgatcctatccc-atatatata 384  Q
    ||||||       ||||||| |||||||||||||||||||| |||||||||    
T  20200624 caaatttaatttgacaccttggtgtcatttgatcctatccctatatatata 20200674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 384
Target Start/End: Original strand, 20202708 - 20202858
Alignment:
Q  242 ctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaatggttatgatttggtgt 341  Q
    |||||| |||||  ||| ||| || |||||||||||||  | ||| |||||||||| ||| ||||||||||||   | |||||||| || ||||||||||    
T  20202708 ctaaaaataaaagatgggtcacttaatcaagcatgtgaacacttagtgaattgatgggagccgttagattaaaaccgtattaatggctaggatttggtgt 20202807  T
Q  342 caaatt-------acaccttagtgtcatttgatcctatccc-atatatata 384  Q
    ||||||       ||||||| |||||||||||||||||||| |||||||||    
T  20202808 caaatttaatttgacaccttggtgtcatttgatcctatccctatatatata 20202858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 41709792 - 41709723
Alignment:
Q  79 caaatgaaagagtagctaatacaaacaggatacaaagataatccaacaaaaattagtaaatagaatctct 148  Q
    |||||||||||||||| ||| |||| ||||||||||||| ||  |||||| ||||||| |||||||||||    
T  41709792 caaatgaaagagtagccaatgcaaagaggatacaaagatgattgaacaaagattagtagatagaatctct 41709723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 20200038 - 20199998
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaa 253  Q
    ||||||| ||||||||||||||||||||||||||| |||||    
T  20200038 taaccaaaagaagaaagaataaattatttctaaaaataaaa 20199998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 384
Target Start/End: Original strand, 24485855 - 24486010
Alignment:
Q  226 aaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaat 325  Q
    ||||||||||||| |  |||||||||||  |   |||||||||||| ||||| |  | ||||||||||||||  |  |||||||||||| ||  ||||||    
T  24485855 aaagaataaattactattaaaattaaaaggtaaatcatttgatcaaacatgtaaccacttaatgaattgatggaaaccgttagattaaaattatattaat 24485954  T
Q  326 ggttatgatttggtgtcaaattacaccttagtgtcatttgatcctatcccatatatata 384  Q
    |  |||||||| ||||||||||  |   | ||||||||||||| |||| ||||||||||    
T  24485955 gactatgatttagtgtcaaatttaa---ttgtgtcatttgatcttatctcatatatata 24486010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 109; Significance: 3e-54; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 217 - 384
Target Start/End: Original strand, 43334618 - 43334791
Alignment:
Q  217 caagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagt 316  Q
    ||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  43334618 caagagaagaaagaa-aaattgtttctaaaattaaaatttggatcatttgatcaagcatgtgagcatttaatgaattgatgatagacgttagattaaagt 43334716  T
Q  317 tggattaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatcccatatatata 384  Q
    || ||||||||||||||||||||||||||||       ||| | | |||||||||||||||||||||||||||||    
T  43334717 tgaattaatggttatgatttggtgtcaaatttaatttgacatcatggtgtcatttgatcctatcccatatatata 43334791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 105; E-Value: 7e-52
Query Start/End: Original strand, 217 - 384
Target Start/End: Original strand, 3163389 - 3163562
Alignment:
Q  217 caagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagt 316  Q
    ||||||||||||||| ||||| |||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||| ||||||| |||||||||    
T  3163389 caagagaagaaagaa-aaattgtttctaaaattaaaatttggatcatttaatcaagcatgtgagcatttaatgaattgatgatagacgttggattaaagt 3163487  T
Q  317 tggattaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatcccatatatata 384  Q
    || ||||||||||||||||||||||||||||       ||||| | |||||||||||||||||||||||||||||    
T  3163488 tgaattaatggttatgatttggtgtcaaatttaatttgacaccatggtgtcatttgatcctatcccatatatata 3163562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 102; E-Value: 5e-50
Query Start/End: Original strand, 223 - 375
Target Start/End: Complemental strand, 3475061 - 3474902
Alignment:
Q  223 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggatt 322  Q
    ||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||    
T  3475061 aagaaagaataaattgtttctaaaattaaaatttagatcatttgatcaagcatgtgagcatttaatgaattgatgagagacgttggattaaagttgaatt 3474962  T
Q  323 aatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatccc 375  Q
    |||||||||||||||||||||||||       ||||| |||| |||||||||||||||||    
T  3474961 aatggttatgatttggtgtcaaatttaatttgacaccatagtatcatttgatcctatccc 3474902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 102; E-Value: 5e-50
Query Start/End: Original strand, 187 - 384
Target Start/End: Complemental strand, 30469708 - 30469503
Alignment:
Q  187 gcaaaatataacgaaaatggtaagta--taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatt 284  Q
    ||||||||||| ||||| ||||||||  ||| ||||| |||||  ||||||||||||||||||||||||||||| | ||||| ||||||||||||| |||    
T  30469708 gcaaaatataatgaaaacggtaagtaattaatcaagaaaagaagaaataaattatttctaaaattaaaatttggattatttgttcaagcatgtgagcatt 30469609  T
Q  285 taatgaattgatgagagacgttagattaaagttggattaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatcccat 377  Q
    |||||| |||||||||||||| | ||||||| |||||||||||||| ||||||||||||||||       ||||||| ||||||||||||||||||||||    
T  30469608 taatgatttgatgagagacgtcaaattaaag-tggattaatggttaggatttggtgtcaaatttaatttgacaccttggtgtcatttgatcctatcccat 30469510  T
Q  378 atatata 384  Q
    |||||||    
T  30469509 atatata 30469503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 189 - 384
Target Start/End: Complemental strand, 3163063 - 3162859
Alignment:
Q  189 aaaatataacgaaaatggtaagta--taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaattta 286  Q
    ||||||||| ||||| ||||||||  ||| ||||| ||||| |||||||||||||||||||||||||||||| | ||||| ||||||||||||| |||||    
T  3163063 aaaatataatgaaaacggtaagtaattaatcaagaaaagaaggaataaattatttctaaaattaaaatttggattatttgttcaagcatgtgagcattta 3162964  T
Q  287 atgaattgatgagagacgttagattaaagttggattaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatccc-ata 378  Q
    |||| |||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||       ||||||| |||||||||||||||||||| |||    
T  3162963 atgatttgatgagagacgtcagattaaag-tggattaatggttaggatttggtgtcaaatttaatttgacaccttggtgtcatttgatcctatccctata 3162865  T
Q  379 tatata 384  Q
    ||||||    
T  3162864 tatata 3162859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 217 - 347
Target Start/End: Original strand, 30469992 - 30470121
Alignment:
Q  217 caagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagt 316  Q
    ||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||    
T  30469992 caagagaagaaagaa-aaattgtttctaaaattaaaatttggatcatttgatcaagcatgtgagcatttaatgaattgatgatagacgtttgattaaagt 30470090  T
Q  317 tggattaatggttatgatttggtgtcaaatt 347  Q
    || ||||||||||||||||||||||||||||    
T  30470091 tgaattaatggttatgatttggtgtcaaatt 30470121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 223 - 347
Target Start/End: Complemental strand, 26774153 - 26774029
Alignment:
Q  223 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggatt 322  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||| |||    
T  26774153 aagaaagaataaattatttctaaaattaaaatttagatcatttgatcaagcatgtgagcatttaatgaattgacgagagacgttggattaaagttgaatt 26774054  T
Q  323 aatggttatgatttggtgtcaaatt 347  Q
    |||||||||||||| ||||||||||    
T  26774053 aatggttatgatttagtgtcaaatt 26774029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 225 - 375
Target Start/End: Original strand, 3475469 - 3475626
Alignment:
Q  225 gaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaa 324  Q
    ||||||||||||| ||||| |||||||||||| | | ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  3475469 gaaagaataaattgtttcttaaattaaaatttagataatttgatcaagcatgtgagtatttaatgaattgatgagagacgtcagattaaagttggattaa 3475568  T
Q  325 tggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatccc 375  Q
    |||||||||||||||||||||||       ||||| | ||||||||||||||||||||    
T  3475569 tggttatgatttggtgtcaaatttgatttgacaccatggtgtcatttgatcctatccc 3475626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 217 - 383
Target Start/End: Original strand, 46428010 - 46428183
Alignment:
Q  217 caagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagt 316  Q
    ||||||||||||||| ||||| |||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||    
T  46428010 caagagaagaaagaa-aaattgtttctaaaattaaaatttagatcatttgatcaagcatgtgagcatttaatgaattgatgatagacgttggattaaagt 46428108  T
Q  317 tggattaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatccc-atatatat 383  Q
    || |||||||||||| |||||||||||||||       ||||| | |||||||||||||||||||| ||||||||    
T  46428109 tgaattaatggttataatttggtgtcaaatttaatttgacaccatggtgtcatttgatcctatccctatatatat 46428183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 213 - 384
Target Start/End: Original strand, 8487695 - 8487874
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    ||||||| ||||||||||||||||||||||||||| |||||  ||| ||| ||||||||||||||||| | |||||||||||||||||| ||||||||||    
T  8487695 taaccaaaagaagaaagaataaattatttctaaaaataaaagatgggtcacttgatcaagcatgtgagcacttaatgaattgatgagagccgttagatta 8487794  T
Q  313 aagttggattaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatccc-atatatata 384  Q
    ||  || |||||||| || ||||||||||||||||       ||||||| |||||||||||||||||||| |||||||||    
T  8487795 aaactgtattaatggctaggatttggtgtcaaatttaatttgacaccttcgtgtcatttgatcctatccctatatatata 8487874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 187 - 384
Target Start/End: Complemental strand, 43334330 - 43334122
Alignment:
Q  187 gcaaaatataacgaaaatggtaagta------taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgag 280  Q
    ||||||||||| ||||| ||||||||      ||| ||||| ||||| |||||||||||||||||||||||||||||| | ||||| ||| |||||||||    
T  43334330 gcaaaatataatgaaaacggtaagtaattaattaatcaagaaaagaaggaataaattatttctaaaattaaaatttggattatttgttcaggcatgtgag 43334231  T
Q  281 aatttaatgaattgatgagagacgttagattaaagttggattaatggttatgatttggtgtcaaa-------ttacaccttagtgtcatttgatcctatc 373  Q
     ||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||| |||||||       | ||||||| |||||||||||||||||     
T  43334230 catttaatgatttgatgagagacgtcagattaaag-tggattaatggttatgatttgatgtcaaacttaatttgacaccttggtgtcatttgatcctat- 43334133  T
Q  374 ccatatatata 384  Q
    |||||||||||    
T  43334132 ccatatatata 43334122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 225 - 347
Target Start/End: Original strand, 26774573 - 26774691
Alignment:
Q  225 gaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaa 324  Q
    |||||||||||||||||||||||||||||||| | | |||||||||||    |||| |||||||||||||||||||||||| ||||||||||||||||||    
T  26774573 gaaagaataaattatttctaaaattaaaatttagataatttgatcaag----tgagcatttaatgaattgatgagagacgtcagattaaagttggattaa 26774668  T
Q  325 tggttatgatttggtgtcaaatt 347  Q
    ||||||||||||| |||||||||    
T  26774669 tggttatgatttgatgtcaaatt 26774691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 81; E-Value: 2e-37
Query Start/End: Original strand, 213 - 384
Target Start/End: Complemental strand, 8487198 - 8487020
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    ||||||| |||| |||||||||||||||||||||| |||||  ||| ||| ||||||||||||||||| | |||||||||||||||||| ||||||||||    
T  8487198 taaccaaaagaacaaagaataaattatttctaaaaataaaagatgggtcacttgatcaagcatgtgagcacttaatgaattgatgagagccgttagatta 8487099  T
Q  313 aagttggattaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatcccatatatata 384  Q
    |    | |||||||| || ||||||||||||||||       ||||||| |||||||||||||||||||||||||||||    
T  8487098 agcccgtattaatggctaggatttggtgtcaaatttaatttgacaccttggtgtcatttgatcctatcccatatatata 8487020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 81; E-Value: 2e-37
Query Start/End: Original strand, 213 - 384
Target Start/End: Complemental strand, 8512873 - 8512695
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    ||||||| |||| |||||||||||||||||||||| |||||  ||| ||| ||||||||||||||||| | |||||||||||||||||| ||||||||||    
T  8512873 taaccaaaagaataaagaataaattatttctaaaaataaaagatgggtcacttgatcaagcatgtgagcacttaatgaattgatgagagccgttagatta 8512774  T
Q  313 aagttggattaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatcccatatatata 384  Q
    |    | |||||||| || ||||||||||||||||       ||||||| |||||||||||||||||||||||||||||    
T  8512773 agcccgtattaatggctaggatttggtgtcaaatttaatttgacaccttggtgtcatttgatcctatcccatatatata 8512695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 223 - 384
Target Start/End: Complemental strand, 30660013 - 30659845
Alignment:
Q  223 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggatt 322  Q
    ||||||||||||||| ||||||||||||||| || | | ||||||| ||||||| ||| ||||||||||||||||||||||||  ||||||||||| |||    
T  30660013 aagaaagaataaattgtttctaaaattaaaaattagataatttgat-aagcatgcgagcatttaatgaattgatgagagacgtcggattaaagttgaatt 30659915  T
Q  323 aatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatccc-atatatata 384  Q
    |||||||||||||||||||||||||       ||||| | |||||||||||||||||||| |||||||||    
T  30659914 aatggttatgatttggtgtcaaatttaatttgacaccatggtgtcatttgatcctatccctatatatata 30659845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 233 - 377
Target Start/End: Complemental strand, 38816835 - 38816694
Alignment:
Q  233 aaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaatggttatg 332  Q
    ||||| |||||||||||||||||| | | ||||||||||||||||||| |||| ||||||||||||||||| | ||||||||||| ||||||| ||||||    
T  38816835 aaattgtttctaaaattaaaatttagataatttgatcaagcatgtgagcatttgatgaattgatgagagacatcagattaaagttagattaatagttatg 38816736  T
Q  333 atttggtgtcaaattacaccttagtgtcatttgatcctatcccat 377  Q
    |||||||||||||||  |   | ||||||||||||||||||||||    
T  38816735 atttggtgtcaaatttga---tggtgtcatttgatcctatcccat 38816694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 213 - 384
Target Start/End: Original strand, 8513350 - 8513529
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    ||||||| ||||||||||||||||||||||||||| |||||  ||| ||| ||||||||||||||||| | |||||||||||||| ||| ||||||||||    
T  8513350 taaccaaaagaagaaagaataaattatttctaaaaataaaagatgggtcacttgatcaagcatgtgagcacttaatgaattgatgggagccgttagatta 8513449  T
Q  313 aagttggattaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatccc-atatatata 384  Q
    ||  || |||| ||| || ||||||||||||||||       ||||||| |||||||||||||||||||| |||||||||    
T  8513450 aaactgtattattggctaggatttggtgtcaaatttaatttgacaccttggtgtcatttgatcctatccctatatatata 8513529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 77; E-Value: 4e-35
Query Start/End: Original strand, 223 - 347
Target Start/End: Complemental strand, 37422717 - 37422594
Alignment:
Q  223 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggatt 322  Q
    ||||||||||||||| ||||||||||||||| || | | ||||||| ||||||||||| ||||||||||||||||||||||||  ||||||||||| |||    
T  37422717 aagaaagaataaattgtttctaaaattaaaaattagataatttgat-aagcatgtgagcatttaatgaattgatgagagacgtcggattaaagttgaatt 37422619  T
Q  323 aatggttatgatttggtgtcaaatt 347  Q
    ||||||||||||||| |||||||||    
T  37422618 aatggttatgatttgatgtcaaatt 37422594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 214 - 344
Target Start/End: Original strand, 21866271 - 21866401
Alignment:
Q  214 aaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaa 313  Q
    |||||| ||||||||||||||||||||| |||||||||||  ||| |||||||||||| |||||||| | ||||||||||||||||| || |||||||||    
T  21866271 aaccaaaagaagaaagaataaattatttttaaaattaaaaggtgggtcatttgatcaaacatgtgagcacttaatgaattgatgagaaacattagattaa 21866370  T
Q  314 agttggattaatggttatgatttggtgtcaa 344  Q
    |  || ||||||||||| ||||| |||||||    
T  21866371 aactgtattaatggttaggattttgtgtcaa 21866401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 223 - 384
Target Start/End: Original strand, 30660406 - 30660573
Alignment:
Q  223 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggatt 322  Q
    ||||||||||||||| |||||||||||||||||| | | ||||| | ||||||| ||| ||| ||||||||||||||||||||  ||||||||||| |||    
T  30660406 aagaaagaataaattgtttctaaaattaaaatttagataatttgtt-aagcatgggagcattcaatgaattgatgagagacgtcggattaaagttgaatt 30660504  T
Q  323 aatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatcccatatatata 384  Q
    ||||||||||||||||| |||||||       ||| | | ||||||||||||||||||| |||||||||    
T  30660505 aatggttatgatttggtctcaaatttaatttgacatcatggtgtcatttgatcctatcctatatatata 30660573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 70; E-Value: 6e-31
Query Start/End: Original strand, 213 - 384
Target Start/End: Complemental strand, 38060016 - 38059837
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    ||||||| ||||||||||||||||||||||||||| |||||  ||| ||| ||||||||||||||||| | ||||||| || ||| ||| ||||||||||    
T  38060016 taaccaaaagaagaaagaataaattatttctaaaaataaaaggtgggtcacttgatcaagcatgtgagcacttaatgagtttatgggagccgttagatta 38059917  T
Q  313 aagttggattaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatccc-atatatata 384  Q
    ||   | |||||||| || ||||||||||||||||       ||||||| |||||||||||||||||||| |||||||||    
T  38059916 aaaccgtattaatggctaggatttggtgtcaaatttaatttgacaccttggtgtcatttgatcctatccctatatatata 38059837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 187 - 384
Target Start/End: Complemental strand, 46427693 - 46427498
Alignment:
Q  187 gcaaaatataacgaaaatggtaagta--taaccaagagaagaaag----aataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgag 280  Q
    ||||||||||| ||||| ||||||||  ||| ||||| ||||| |    ||||||||||||||||||||||||||||| | ||||| |||||||||||||    
T  46427693 gcaaaatataatgaaaacggtaagtaattaatcaagaaaagaaggaataaataaattatttctaaaattaaaatttggattatttgttcaagcatgtgag 46427594  T
Q  281 aatttaatgaattgatgagagacgttagattaaagttggattaatggttatgatttggtgtcaaattacaccttagtgtcatttgatcctatcccatata 380  Q
     ||||||||| |||||||||||| | | ||||||| ||||||||| ||||  ||||||||||||       | | ||||||||||||||||||| |||||    
T  46427593 catttaatgatttgatgagagacatcatattaaag-tggattaatagttagaatttggtgtcaa-------cgtggtgtcatttgatcctatcctatata 46427502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 213 - 384
Target Start/End: Complemental strand, 31178808 - 31178631
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    ||||||| |||||||||||||| |||||||||||| |||||  ||| ||| ||||||||||||||||| ||||||||| || ||| ||| ||||||||||    
T  31178808 taaccaaaagaagaaagaataa-ttatttctaaaaataaaaggtgggtcacttgatcaagcatgtgagtatttaatgagtttatgggagccgttagatta 31178710  T
Q  313 aagttggattaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatcccatatatata 384  Q
    ||  || |||||||| || ||||||||||||||||       ||| ||| ||||||||||||| ||||| |||||||||    
T  31178709 aaactgtattaatggctaggatttggtgtcaaatttaatttgacatcttggtgtcatttgatcatatcctatatatata 31178631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 213 - 347
Target Start/End: Original strand, 25245548 - 25245682
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    ||||||| |||||||||||||||||||||||||||||||||  ||| ||| |||||||| |||||||| | |||||||||| ||||||| | ||||||||    
T  25245548 taaccaaaagaagaaagaataaattatttctaaaattaaaaggtggatcacttgatcaaacatgtgagcacttaatgaattaatgagagtcattagatta 25245647  T
Q  313 aagttggattaatggttatgatttggtgtcaaatt 347  Q
    ||   | |||||||| || ||||||||||| ||||    
T  25245648 aaacagtattaatggctaagatttggtgtctaatt 25245682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 213 - 343
Target Start/End: Complemental strand, 28451293 - 28451163
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    ||||||| |||||||||||| |||||||||||||| |||||  | | ||| ||||||||| ||||||| | |||||||||||||||||| ||||||||||    
T  28451293 taaccaaaagaagaaagaatgaattatttctaaaaataaaagattggtcacttgatcaagtatgtgagtacttaatgaattgatgagagccgttagatta 28451194  T
Q  313 aagttggattaatggttatgatttggtgtca 343  Q
    ||   | |||||||| || ||||||||||||    
T  28451193 aaaccgtattaatggctaggatttggtgtca 28451163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 213 - 384
Target Start/End: Original strand, 31179808 - 31179984
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    ||||||| ||||||||||||||||||||||||||| |||||  ||| ||| || || ||||||| ||| | ||||||| || ||| ||| ||||||||||    
T  31179808 taaccaaaagaagaaagaataaattatttctaaaaataaaaggtgggtcactt-at-aagcatgcgagcacttaatgagtttatgggagccgttagatta 31179905  T
Q  313 aagttggattaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatccc-atatatata 384  Q
    ||  || | ||||||||| ||||||||||||||||       ||||||| |||||||||||||||||||| |||||||||    
T  31179906 aaactgta-taatggttaagatttggtgtcaaatttaatttgacaccttggtgtcatttgatcctatccctatatatata 31179984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 221 - 347
Target Start/End: Complemental strand, 21865727 - 21865601
Alignment:
Q  221 agaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttgga 320  Q
    ||||||||||||||||||||| |||||||||||  ||| ||| ||||||||  ||||||| | |||||||||||||| ||  | || |||||||  |  |    
T  21865727 agaagaaagaataaattatttttaaaattaaaaggtgggtcacttgatcaaaaatgtgagcacttaatgaattgatgtgaaccttttgattaaaactata 21865628  T
Q  321 ttaatggttatgatttggtgtcaaatt 347  Q
    | ||||||||  |||||||||||||||    
T  21865627 tgaatggttaaaatttggtgtcaaatt 21865601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 79 - 148
Target Start/End: Original strand, 26774457 - 26774526
Alignment:
Q  79 caaatgaaagagtagctaatacaaacaggatacaaagataatccaacaaaaattagtaaatagaatctct 148  Q
    |||||||||||||||| |||||||| ||||||||||||| ||  |||||| |||| ||||||||||||||    
T  26774457 caaatgaaagagtagccaatacaaagaggatacaaagatgattgaacaaagattaataaatagaatctct 26774526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 344
Target Start/End: Original strand, 26076786 - 26076911
Alignment:
Q  219 agagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttg 318  Q
    ||||||||  |||||||| |||||||||| || ||| ||| |||||||||||||||  ||||   | |||||||| |  || |||||| |||||||||||    
T  26076786 agagaagatggaataaatcatttctaaaagtacaatgtgggtcatttgatcaagcacatgagcgatcaatgaattaaaaagtgacgttggattaaagttg 26076885  T
Q  319 gattaatggttatgatttggtgtcaa 344  Q
     |||| |||| |  ||||||||||||    
T  26076886 tattagtggtcagaatttggtgtcaa 26076911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 344
Target Start/End: Original strand, 26100573 - 26100698
Alignment:
Q  219 agagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttg 318  Q
    ||||||||  |||||||| |||||||||| || ||| ||| |||||||||||||||  ||||   | |||||||| |  || |||||| |||||||||||    
T  26100573 agagaagatggaataaatcatttctaaaagtacaatgtgggtcatttgatcaagcacatgagcgatcaatgaattaaaaagtgacgttggattaaagttg 26100672  T
Q  319 gattaatggttatgatttggtgtcaa 344  Q
     |||| |||| |  ||||||||||||    
T  26100673 tattagtggtcagaatttggtgtcaa 26100698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 348 - 384
Target Start/End: Complemental strand, 30001830 - 30001794
Alignment:
Q  348 acaccttagtgtcatttgatcctatcccatatatata 384  Q
    ||||| |||||||||||||||||||||||||||||||    
T  30001830 acaccatagtgtcatttgatcctatcccatatatata 30001794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 347
Target Start/End: Complemental strand, 43742862 - 43742755
Alignment:
Q  240 ttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaatggttatgatttggt 339  Q
    |||||| |||||||| ||| | ||||||| ||||||||||| ||||||||| | |||| ||  ||||||||||||  || |||||| | ||  ||||| |    
T  43742862 ttctaatattaaaatatggataatttgattaagcatgtgagcatttaatgagtcgatgggaaccgttagattaaaactgtattaatagctagaatttgat 43742763  T
Q  340 gtcaaatt 347  Q
    ||||||||    
T  43742762 gtcaaatt 43742755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 109; Significance: 3e-54; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 160 - 385
Target Start/End: Original strand, 42883295 - 42883514
Alignment:
Q  160 gggagaaatcaaatggcaatcat-----tagtgcaaaatataacgaaaatggtaagta--taaccaagagaagaaagaataaattatttctaaaattaaa 252  Q
    |||| ||||||||||||||||||     || |||||||||||||||||||||||| ||  |||| |||||||||||||||||||||||| ||||||||||    
T  42883295 gggaaaaatcaaatggcaatcatcttcctaatgcaaaatataacgaaaatggtaaatagttaactaagagaagaaagaataaattatttataaaattaaa 42883394  T
Q  253 atttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaatggttatgatttggtgtcaaattacacc 352  Q
    |||||  ||||||||||||||||||||  |||||||||||||||||| ||||| |||||||||||||||||||||   |||||||          |||||    
T  42883395 atttgaatcatttgatcaagcatgtgaacatttaatgaattgatgagggacgtcagattaaagttggattaatgg---tgatttg----------acacc 42883481  T
Q  353 ttagtgtcatttgatcctatcccatatatataa 385  Q
    |||||||||||||||||||||||||||||||||    
T  42883482 ttagtgtcatttgatcctatcccatatatataa 42883514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 217 - 384
Target Start/End: Original strand, 21825039 - 21825211
Alignment:
Q  217 caagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagt 316  Q
    ||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||    
T  21825039 caagagaagaaagaa-aaattgtttctaaaattaaaatttggatcatttgatcaagcatgtgagcatttaatgaattgatgatagacgttggattaaagt 21825137  T
Q  317 tggattaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatcccatatatata 384  Q
    || |||||||||||| |||||||||||||||       ||||| | ||||||||||||||||| |||||||||||    
T  21825138 tgaattaatggttataatttggtgtcaaatttaatttgacaccatggtgtcatttgatcctat-ccatatatata 21825211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 187 - 384
Target Start/End: Complemental strand, 21824753 - 21824548
Alignment:
Q  187 gcaaaatataacgaaaatggtaagta--taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatt 284  Q
    ||||||||||| |||||  |||||||  ||| ||||| ||||| |||||||||||||||||||||||||||||| | ||||| ||||||||||||| |||    
T  21824753 gcaaaatataatgaaaacagtaagtaattaatcaagaaaagaaggaataaattatttctaaaattaaaatttggattatttgttcaagcatgtgagcatt 21824654  T
Q  285 taatgaattgatgagagacgttagattaaagttggattaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatcccat 377  Q
    |||||| |||||||||||||| ||||||||| ||||||||||||||  |||||||||||||||       |||||||  |||||||||||| ||||||||    
T  21824653 taatgatttgatgagagacgtcagattaaag-tggattaatggttagaatttggtgtcaaatttaatttgacaccttgatgtcatttgatcatatcccat 21824555  T
Q  378 atatata 384  Q
    |||||||    
T  21824554 atatata 21824548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 91; E-Value: 2e-43
Query Start/End: Original strand, 213 - 347
Target Start/End: Complemental strand, 42882917 - 42882783
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    ||||||| |||||||| ||||||||||||||||||||||| ||| | ||||||||||| ||||| ||  |||||||||||||||||| ||||||||||||    
T  42882917 taaccaatagaagaaaaaataaattatttctaaaattaaatttttgatcatttgatcaggcatgggaacatttaatgaattgatgagggacgttagatta 42882818  T
Q  313 aagttggattaatggttatgatttggtgtcaaatt 347  Q
    || ||||||||||||||||||||||||||||||||    
T  42882817 aaattggattaatggttatgatttggtgtcaaatt 42882783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 213 - 384
Target Start/End: Complemental strand, 45919680 - 45919501
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    ||||||| ||||||||||||||||||||||||||| |||||  ||| ||| ||||||||||||||||| | |||||||||||||||||| ||||||||||    
T  45919680 taaccaaaagaagaaagaataaattatttctaaaaataaaagatgggtcacttgatcaagcatgtgagcacttaatgaattgatgagagccgttagatta 45919581  T
Q  313 aagttggattaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatccc-atatatata 384  Q
    ||   | |||||||  || |||||| |||||||||       ||||||| |||||||||||||||||||| |||||||||    
T  45919580 aaaccgtattaatgactaggatttgatgtcaaatttaatttgacaccttggtgtcatttgatcctatccctatatatata 45919501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 213 - 347
Target Start/End: Original strand, 45920174 - 45920308
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    ||||||| ||||||||||||||||||||||||||| |||||  ||| ||| ||||||||||||||||| | |||||||||||||| ||| ||||||||||    
T  45920174 taaccaaaagaagaaagaataaattatttctaaaaataaaagatgggtcacttgatcaagcatgtgagcacttaatgaattgatgggagccgttagatta 45920273  T
Q  313 aagttggattaatggttatgatttggtgtcaaatt 347  Q
    ||  || |||||||| ||  |||||||||||||||    
T  45920274 aaactgtattaatggctagaatttggtgtcaaatt 45920308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 213 - 376
Target Start/End: Original strand, 4158498 - 4158668
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    ||||||||||| |||||||||||||||||||||||||||||  |   |||||||||||| |||||||| | ||||| |||| |||  |  ||||||||||    
T  4158498 taaccaagagatgaaagaataaattatttctaaaattaaaagatatgtcatttgatcaaacatgtgagcacttaataaattaatggaaaccgttagatta 4158597  T
Q  313 aagttggattaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatccca 376  Q
    || ||| |||||||| || ||||||||||||||||       |||||| ||||||||||||||||||||||    
T  4158598 aaattgtattaatggctaggatttggtgtcaaatttaatttgacacctaagtgtcatttgatcctatccca 4158668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 213 - 348
Target Start/End: Complemental strand, 46618519 - 46618384
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    ||||||| ||||||||||||||||||||||||||| |||||| ||| ||| |||||||| |||||||| | ||||||| || ||||||  ||||||||||    
T  46618519 taaccaaaagaagaaagaataaattatttctaaaaataaaatgtggatcacttgatcaaacatgtgagcacttaatgagtttatgagaaccgttagatta 46618420  T
Q  313 aagttggattaatggttatgatttggtgtcaaatta 348  Q
    ||   | |||||||| || |||||| ||||||||||    
T  46618419 aaaccgtattaatggctaggatttgatgtcaaatta 46618384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 213 - 375
Target Start/End: Original strand, 46619514 - 46619683
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    ||||||| |||||||| |||||||||||||||||| |||||  ||| ||| ||||||||||||||||| | ||||||| || ||| ||| ||||||||||    
T  46619514 taaccaaaagaagaaaaaataaattatttctaaaaataaaaggtgggtcacttgatcaagcatgtgagcacttaatgagtttatgggagccgttagatta 46619613  T
Q  313 aagttggattaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatccc 375  Q
    ||   | |||||| | |||||||||||||||||||       ||||||| ||||||||||||| ||||||    
T  46619614 aaaccgtattaattgctatgatttggtgtcaaatttaatttgacaccttggtgtcatttgatcatatccc 46619683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 221 - 377
Target Start/End: Original strand, 41696015 - 41696178
Alignment:
Q  221 agaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttgga 320  Q
    |||||||||||||||||||||  |||| ||||   ||| ||| ||||||||||||||||| | |||||||||||||| ||| ||||||||||||   | |    
T  41696015 agaagaaagaataaattattttaaaaaataaaggatgggtcacttgatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgta 41696114  T
Q  321 ttaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatcccat 377  Q
    ||||| | || ||||||||||||||||       ||||||| || |||||||||||||||||||    
T  41696115 ttaatagctaagatttggtgtcaaatttaatttgacaccttggtatcatttgatcctatcccat 41696178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 52 - 182
Target Start/End: Original strand, 52363476 - 52363606
Alignment:
Q  52 catgaactcaagaattatatgatccatcaaatgaaagagtagctaatacaaacaggatacaaagataatccaacaaaaattagtaaatagaatctctnnn 151  Q
    ||||||| ||||||| |||  || || |||||||||| ||||| |||| ||||| ||||||||||||| ||||||||||||||||||||||||||||       
T  52363476 catgaacacaagaataataccatacaacaaatgaaagcgtagccaatataaacatgatacaaagataagccaacaaaaattagtaaatagaatctct-ac 52363574  T
Q  152 nnnntagt-gggagaaatcaaatggcaatcat 182  Q
        |||| |||||||||||||||||||||||    
T  52363575 aaaatagtagggagaaatcaaatggcaatcat 52363606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 213 - 375
Target Start/End: Complemental strand, 41695553 - 41695384
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    ||||||| |||| |||||||||||||||||||||| |||||  |||  || |||||||| |||||||  | ||||||||||||||  || ||||||||||    
T  41695553 taaccaaaagaaaaaagaataaattatttctaaaaataaaaaatgggccacttgatcaaacatgtgaacacttaatgaattgatggaagccgttagatta 41695454  T
Q  313 aagttggattaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatccc 375  Q
    ||   | ||||||  ||| ||||||||||||||||       ||||||| ||||||||||||||||||||    
T  41695453 aaaccgtattaataattaggatttggtgtcaaatttaatttgacaccttggtgtcatttgatcctatccc 41695384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 221 - 347
Target Start/End: Complemental strand, 42058645 - 42058521
Alignment:
Q  221 agaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttgga 320  Q
    ||||||||||||||||||||| |||||||||||  |   ||||||||  ||||||||||  |||||||||||| ||||||  |||||||||||| ||  |    
T  42058645 agaagaaagaataaattatttttaaaattaaaaggtatatcatttga--aagcatgtgaacatttaatgaatttatgagaaccgttagattaaaattata 42058548  T
Q  321 ttaatggttatgatttggtgtcaaatt 347  Q
    ||||| |||| ||||||||||||||||    
T  42058547 ttaatagttaggatttggtgtcaaatt 42058521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 221 - 314
Target Start/End: Complemental strand, 29212155 - 29212062
Alignment:
Q  221 agaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaa 314  Q
    |||||||| |||||||||||||||||| |||||  ||| ||| ||||||||||||||||| | |||||||||||||| |||  |||||||||||    
T  29212155 agaagaaataataaattatttctaaaaataaaagatgggtcacttgatcaagcatgtgagcacttaatgaattgatgggagctgttagattaaa 29212062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 192 - 275
Target Start/End: Original strand, 24534111 - 24534196
Alignment:
Q  192 atataacgaaaatggtaagta--taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcat 275  Q
    |||||| ||||||||||||||  ||||||||| |||||| ||||||||||||||||||||||||||||| | ||||  ||||||||    
T  24534111 atataatgaaaatggtaagtaattaaccaagaaaagaaataataaattatttctaaaattaaaatttggataattttttcaagcat 24534196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 213 - 314
Target Start/End: Original strand, 24377837 - 24377937
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    |||| |||||||||||||||| ||| |||||||||||||||  ||| |||||| |||||||||||||  | |||| |||||||| ||||  |||||||||    
T  24377837 taactaagagaagaaagaatagattgtttctaaaattaaaaggtggttcattt-atcaagcatgtgatcacttaacgaattgattagagctgttagatta 24377935  T
Q  313 aa 314  Q
    ||    
T  24377936 aa 24377937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 139
Target Start/End: Original strand, 42883193 - 42883277
Alignment:
Q  56 aactcaagaattatatgatccat-caaatgaaagagtagctaatacaaacaggatacaaagataatccaacaaaaattagtaaat 139  Q
    ||||||||||| |||| |||||  ||||||||||||| || |||||||||||||| |||| |  |||||||||||||||||||||    
T  42883193 aactcaagaataatattatccaaacaaatgaaagagtggccaatacaaacaggatgcaaataagatccaacaaaaattagtaaat 42883277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 213 - 375
Target Start/End: Complemental strand, 4157940 - 4157780
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    |||| ||||||||||||||||||||||||||||||||||||  ||  | ||||||  ||||        | ||||||||||||||| |  |||| ||| |    
T  4157940 taacgaagagaagaaagaataaattatttctaaaattaaaaggtgagttatttgacaaagc--------acttaatgaattgatgaaaaccgttcgatca 4157849  T
Q  313 aagttggattaatggttatgatttggtgtc----aaatt--acaccttagtgtcatttgatcctatccc 375  Q
    || ||| ||||||||||| |||||||||||    |||||  ||||||| ||||||||||||||||||||    
T  4157848 aaattgtattaatggttaggatttggtgtcaattaaatttgacaccttggtgtcatttgatcctatccc 4157780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 272
Target Start/End: Complemental strand, 52363170 - 52363111
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaag 272  Q
    ||||||| ||| |||||||||  ||||||||||||||||||||||  |||||||||||||    
T  52363170 taaccaatagatgaaagaatattttatttctaaaattaaaatttgcatcatttgatcaag 52363111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 107; Significance: 5e-53; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 5e-53
Query Start/End: Original strand, 79 - 375
Target Start/End: Complemental strand, 4776560 - 4776247
Alignment:
Q  79 caaatgaaagagtagctaatacaaacaggatacaaagataatccaacaaaaattagtaaatagaatctctnnnnnnntagt-gggagaaatcaaatggca 177  Q
    |||||||||| ||||| |||| ||||| ||||||||||||| ||||||||||||||||||||||||||||       |||| ||||||||||||||||||    
T  4776560 caaatgaaagcgtagccaatataaacatgatacaaagataagccaacaaaaattagtaaatagaatctctacaaaa-tagtagggagaaatcaaatggca 4776462  T
Q  178 atcat--------tagtgcaaaatataacgaaaatggtaagtat--aaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttga 267  Q
    |||||        | |||||||||||||| ||||  | || |||  |||||||| ||||||||||||||||||||||||||| |||||| | ||| ||||    
T  4776461 atcatctatctattggtgcaaaatataacaaaaacaggaactattcaaccaagaaaagaaagaataaattatttctaaaattgaaattttgatcaattga 4776362  T
Q  268 tcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaatggttatgatttggtgtcaaatt-------acaccttagtgtc 360  Q
    ||||||||||||| ||||||||||||||||||  ||||  |||||| ||||||||||| |||| ||||| ||||||||||       |||| ||||||||    
T  4776361 tcaagcatgtgagcatttaatgaattgatgagcaacgtcggattaatgttggattaattgttaggatttagtgtcaaatttaatttgacactttagtgtc 4776262  T
Q  361 atttgatcctatccc 375  Q
    |||||||| ||||||    
T  4776261 atttgatcatatccc 4776247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 217 - 384
Target Start/End: Complemental strand, 19386459 - 19386286
Alignment:
Q  217 caagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagt 316  Q
    ||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| | ||| ||| |||||||||    
T  19386459 caagagaagaaagaa-aaattgtttctaaaattaaaatttggatcatttgatcaagcatgtgagcatttaatgaattgataatagatgttggattaaagt 19386361  T
Q  317 tggattaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatcccatatatata 384  Q
    || ||||||||||||||||||||||||||||       ||||| | ||||||||||||| |||||||||||||||    
T  19386360 tgaattaatggttatgatttggtgtcaaatttaatttgacaccatggtgtcatttgatcatatcccatatatata 19386286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 213 - 383
Target Start/End: Complemental strand, 121473 - 121296
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    |||||||||||||||||||||  ||||||||||||||||||||||  ||||||||||||| || |||| ||||||||||||||||||||||||  |||||    
T  121473 taaccaagagaagaaagaatattttatttctaaaattaaaatttgcatcatttgatcaagtatttgagtatttaatgaattgatgagagacgtcggatta 121374  T
Q  313 aagttggattaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatcccatatatat 383  Q
    ||||| |||||||||||||||||| ||||||||||       |||||||||||||||||||||  ||||| |||||||    
T  121373 aagtttgattaatggttatgatttagtgtcaaatttaatttgacaccttagtgtcatttgatctcatcccttatatat 121296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 214 - 386
Target Start/End: Original strand, 122842 - 123020
Alignment:
Q  214 aaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaa 313  Q
    |||||||| ||||||||||| |||||||||||||||||| ||||| |||||| |||||| ||||||| ||||||||||||||||||||||||| ||||||    
T  122842 aaccaagaaaagaaagaatacattatttctaaaattaaagtttggatcatttcatcaagtatgtgagcatttaatgaattgatgagagacgttggattaa 122941  T
Q  314 agttggattaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatcccatatatataaa 386  Q
     |||| |||||||||||  |||||||||||||||       ||||||| ||||||||||||||||||||| |||||||||    
T  122942 tgttgaattaatggttagaatttggtgtcaaatttaatttgacaccttggtgtcatttgatcctatccca-atatataaa 123020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 88; E-Value: 1e-41
Query Start/End: Original strand, 187 - 347
Target Start/End: Original strand, 19386778 - 19386939
Alignment:
Q  187 gcaaaatataacgaaaatggtaagta--taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatt 284  Q
    ||||||||||| ||||| ||||||||  ||| ||||| ||||| |||||||||||||||||||||||||||||| | ||||| |||||||| |||| |||    
T  19386778 gcaaaatataatgaaaacggtaagtaattaatcaagaaaagaaggaataaattatttctaaaattaaaatttggattatttgttcaagcatatgagcatt 19386877  T
Q  285 taatgaattgatgagagacgttagattaaagttggattaatggttatgatttggtgtcaaatt 347  Q
    |||||| |||||||||||||| ||||||||| |||||||||||||| ||||| ||||||||||    
T  19386878 taatgatttgatgagagacgtcagattaaag-tggattaatggttaggatttagtgtcaaatt 19386939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 223 - 382
Target Start/End: Complemental strand, 20202808 - 20202643
Alignment:
Q  223 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggatt 322  Q
    ||||||||||||||| ||||||||||||||| || | | ||||||| ||||||||||| ||||||||||||||||||||||||  ||||||||||| |||    
T  20202808 aagaaagaataaattgtttctaaaattaaaaattagataatttgat-aagcatgtgagcatttaatgaattgatgagagacgtcggattaaagttgaatt 20202710  T
Q  323 aatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatcccatatata 382  Q
    |||||||||||||||||||||||||       |||||   |||||||||||||||||||||||||||    
T  20202709 aatggttatgatttggtgtcaaatttaatttgacaccacggtgtcatttgatcctatcccatatata 20202643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 186 - 336
Target Start/End: Complemental strand, 38956201 - 38956050
Alignment:
Q  186 tgcaaaatataacgaaaatggtaagta--taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaat 283  Q
    |||||||||||| ||||| ||||||||  ||| ||||| ||||||||||| |||||||||||||||||||||| | | ||||| ||||||||||||| ||    
T  38956201 tgcaaaatataatgaaaacggtaagtaattaatcaagaaaagaaagaatagattatttctaaaattaaaatttagataatttgttcaagcatgtgagcat 38956102  T
Q  284 ttaatgaattgatgagagacgttagattaaagttggattaatggttatgattt 336  Q
    ||||||| |||| |||||||||| |||||||| |||||||||||||| |||||    
T  38956101 ttaatgacttgacgagagacgttggattaaag-tggattaatggttaggattt 38956050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 77; E-Value: 4e-35
Query Start/End: Original strand, 213 - 384
Target Start/End: Complemental strand, 42848886 - 42848708
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    ||||||| ||||||||||||||||||||||||||| |||||  ||| ||| ||||||||||||||||  | |||||||||||||| ||| ||||||||||    
T  42848886 taaccaaaagaagaaagaataaattatttctaaaaataaaagatgggtcacttgatcaagcatgtgaacacttaatgaattgatgggagtcgttagatta 42848787  T
Q  313 aagttggattaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatcccatatatata 384  Q
    ||     |||||||| || ||||||||||||||||       |||||||| ||||||||||||||||||||||||||||    
T  42848786 aaaccatattaatggctaggatttggtgtcaaatttaatttgacaccttattgtcatttgatcctatcccatatatata 42848708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 223 - 384
Target Start/End: Original strand, 8911734 - 8911902
Alignment:
Q  223 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggatt 322  Q
    ||||||||||||||| |||||||||||||||||| | | ||||||| ||||||||||| ||||||||||||||||  | ||||  ||||||||||| |||    
T  8911734 aagaaagaataaattgtttctaaaattaaaatttagataatttgat-aagcatgtgagcatttaatgaattgatggaaaacgtcggattaaagttgaatt 8911832  T
Q  323 aatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatccc-atatatata 384  Q
    |||||||||||||||||||||||||       ||||| | |||||||||||||||||||| |||||||||    
T  8911833 aatggttatgatttggtgtcaaatttaatttgacaccatggtgtcatttgatcctatccctatatatata 8911902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 223 - 384
Target Start/End: Complemental strand, 8911323 - 8911157
Alignment:
Q  223 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggatt 322  Q
    ||||||||||||||| ||||||||||||||| || | | ||||||| ||||||||||| ||||||||| ||||||||||||||  ||||||||||| |||    
T  8911323 aagaaagaataaattgtttctaaaattaaaaattagataatttgat-aagcatgtgagtatttaatga-ttgatgagagacgtcggattaaagttgaatt 8911226  T
Q  323 aatggttatgatttggtgtcaaa-------ttacaccttagtgtcatttgatcctatcccatatatata 384  Q
    |||||||||||||||||||||||       | ||||| | |||||||||||||||||| ||||||||||    
T  8911225 aatggttatgatttggtgtcaaatataatttgacaccatggtgtcatttgatcctatctcatatatata 8911157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 213 - 375
Target Start/End: Original strand, 39629401 - 39629570
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    ||||||| ||||||||||||||||||||||||||| |||||  ||| ||| || |||||||||||||| | |||||||||||||||||| ||||||||||    
T  39629401 taaccaaaagaagaaagaataaattatttctaaaaataaaagatgggtcacttaatcaagcatgtgagcacttaatgaattgatgagagccgttagatta 39629500  T
Q  313 aagttggattaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatccc 375  Q
    ||  || |||||||| ||  |||||||||||||||       ||||||| ||||||||||||| ||||||    
T  39629501 aaactgtattaatggctagaatttggtgtcaaatttaatttgacaccttggtgtcatttgatcatatccc 39629570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 70; E-Value: 6e-31
Query Start/End: Original strand, 213 - 384
Target Start/End: Original strand, 42849385 - 42849564
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    ||||||| |||| |||||||||||||||||||||| |||||  ||| ||| || |||||||||||||| | |||||||||||||| ||| ||||||||||    
T  42849385 taaccaaaagaaaaaagaataaattatttctaaaaataaaagatgggtcacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagatta 42849484  T
Q  313 aagttggattaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatccc-atatatata 384  Q
    ||   | |||||||| || ||||||||||||||||       ||||||| |||||||||||||||||||| |||||||||    
T  42849485 aaaccgtattaatggctaggatttggtgtcaaatttaatttgacaccttggtgtcatttgatcctatccctatatatata 42849564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 223 - 377
Target Start/End: Original strand, 20203197 - 20203358
Alignment:
Q  223 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggatt 322  Q
    ||||||||||||||| ||||||||||||||||||   | ||||| | ||||||||||| ||| ||||||||||||| | ||||  ||||||||||| |||    
T  20203197 aagaaagaataaattgtttctaaaattaaaatttatataatttgtt-aagcatgtgagcattcaatgaattgatgaaaaacgtcggattaaagttgaatt 20203295  T
Q  323 aatggttatgatttggtgtcaaatt--------acaccttagtgtcatttgatcctatcccat 377  Q
    |||||||||||||||||||||||||        ||||| | ||||||||||||||||||||||    
T  20203296 aatggttatgatttggtgtcaaatttaaatttgacaccatggtgtcatttgatcctatcccat 20203358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 213 - 381
Target Start/End: Complemental strand, 13327913 - 13327738
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    ||||||| |||||||| |||||||||||||||||| |||||  ||| ||| |||||||||||||||||   | ||||| || ||  ||| ||||||||||    
T  13327913 taaccaaaagaagaaataataaattatttctaaaaataaaaggtgggtcacttgatcaagcatgtgagcgctcaatgagtttatcggagccgttagatta 13327814  T
Q  313 aagttggattaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatcccatatat 381  Q
    ||   | ||||||||||| ||||||||||||||||       ||||||| ||||||||||||| ||||||||||||    
T  13327813 aaaccgtattaatggttaggatttggtgtcaaatttaatttaacaccttggtgtcatttgatcttatcccatatat 13327738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 213 - 314
Target Start/End: Complemental strand, 39628906 - 39628805
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    ||||||| ||||||||||||||||||||||||||| |||||  ||| ||| ||||||||||||||||| | ||||||||||||||  || ||||||||||    
T  39628906 taaccaaaagaagaaagaataaattatttctaaaaataaaagatgggtcacttgatcaagcatgtgagcacttaatgaattgatggaagccgttagatta 39628807  T
Q  313 aa 314  Q
    ||    
T  39628806 aa 39628805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 213 - 304
Target Start/End: Original strand, 4776896 - 4776987
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacg 304  Q
    |||||||| ||||||||||||  ||||||||||||||||||||||  |||||||||||||||| |||| ||||||||||||| ||| |||||    
T  4776896 taaccaagcgaagaaagaatattttatttctaaaattaaaatttgcatcatttgatcaagcatatgagcatttaatgaattgttgaaagacg 4776987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 217 - 336
Target Start/End: Original strand, 44929019 - 44929138
Alignment:
Q  217 caagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagt 316  Q
    |||||||||||| ||||||||||||||||||||||||  ||| ||||||||||||  ||||||| |||||||||||||||||    |||||||||||| |    
T  44929019 caagagaagaaataataaattatttctaaaattaaaaggtgggtcatttgatcaaatatgtgagcatttaatgaattgatgaacaccgttagattaaaat 44929118  T
Q  317 tggattaatggttatgattt 336  Q
    |  |||||||| || |||||    
T  44929119 tatattaatggctaggattt 44929138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 213 - 372
Target Start/End: Original strand, 13328698 - 13328864
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    ||||||| ||||||||||||||||||||| ||||| |||||  ||| ||| ||||||||||||||||| | ||||| | || |||  || ||||||||||    
T  13328698 taaccaaaagaagaaagaataaattatttttaaaaataaaaggtgggtcacttgatcaagcatgtgagcacttaataagtttatggaagtcgttagatta 13328797  T
Q  313 aagttggattaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctat 372  Q
    ||   | |||||||| ||  |||||||||||||||       |||||||||||||||||||||||||    
T  13328798 aacccgtattaatggctagaatttggtgtcaaatttaatttaacaccttagtgtcatttgatcctat 13328864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 213 - 343
Target Start/End: Complemental strand, 2477372 - 2477242
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    ||||||| || |||||||||||||||||||||||| |||||  ||| ||| ||||||||||||||||| | ||||||| || |||  || ||||||||||    
T  2477372 taaccaaaaggagaaagaataaattatttctaaaaataaaaggtgggtcacttgatcaagcatgtgagcacttaatgagtttatggaagccgttagatta 2477273  T
Q  313 aagttggattaatggttatgatttggtgtca 343  Q
    ||   | |||||||| || ||||||||||||    
T  2477272 aaaccgtattaatggctaggatttggtgtca 2477242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 221 - 343
Target Start/End: Original strand, 2477851 - 2477973
Alignment:
Q  221 agaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttgga 320  Q
    |||||||||  ||||||||||||||||||||||  ||| ||| ||||||||||||||||| | ||||||| || ||| ||| ||||||||||||   | |    
T  2477851 agaagaaagtttaaattatttctaaaattaaaaggtgggtcacttgatcaagcatgtgagcacttaatgagtttatgggagccgttagattaaaaccgta 2477950  T
Q  321 ttaatggttatgatttggtgtca 343  Q
    ||||||| || ||||||||||||    
T  2477951 ttaatggctaggatttggtgtca 2477973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 213 - 375
Target Start/End: Complemental strand, 38273720 - 38273551
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    |||| ||||||||||||||||  || |||||||||||||||  |||||||||| |||||  ||||||| | |||  |||||||| |||| |||| |||||    
T  38273720 taactaagagaagaaagaataggttgtttctaaaattaaaaggtggctcatttaatcaaatatgtgagcacttatagaattgattagagccgttggatta 38273621  T
Q  313 aagttggattaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatccc 375  Q
    ||  |  |||||||| || ||||||||||||||||       ||||||| |||| |||||||||||||||    
T  38273620 aaactatattaatggataagatttggtgtcaaattttatttgacaccttggtgttatttgatcctatccc 38273551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 138
Target Start/End: Complemental strand, 8911468 - 8911378
Alignment:
Q  48 gcagcatgaactcaagaattatatgatccatcaaatgaaagagtagctaatacaaacaggatacaaagataatccaacaaaaattagtaaa 138  Q
    |||||||||||||||||||  ||  ||||| |||||||||||||||  |||||||| |||||| |||||| ||  |||||| |||||||||    
T  8911468 gcagcatgaactcaagaatactaccatccaacaaatgaaagagtagtcaatacaaagaggatataaagatgattgaacaaagattagtaaa 8911378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 138
Target Start/End: Complemental strand, 38956353 - 38956263
Alignment:
Q  48 gcagcatgaactcaagaattatatgatccatcaaatgaaagagtagctaatacaaacaggatacaaagataatccaacaaaaattagtaaa 138  Q
    ||||| |||| ||| |||| |||| ||||| |||||||||||||||  |||||||| ||||||||||||| ||  |||||| |||||||||    
T  38956353 gcagcttgaattcaggaatgatatcatccaacaaatgaaagagtaggcaatacaaataggatacaaagatgatggaacaaagattagtaaa 38956263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 230 - 347
Target Start/End: Complemental strand, 44926794 - 44926676
Alignment:
Q  230 aataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgag-aatttaatgaattgatgagagacgttagattaaagttggattaatggt 328  Q
    |||||||||||| |||||||||||  ||| ||| ||||||||| ||||||| | ||||||||||||||  ||  ||||| ||||||  || ||||||||     
T  44926794 aataaattatttgtaaaattaaaagatggatcagttgatcaagtatgtgagcactttaatgaattgattggaaccgttaaattaaaactgtattaatggg 44926695  T
Q  329 tatgatttggtgtcaaatt 347  Q
    || |||||| ||| |||||    
T  44926694 taggatttgatgtaaaatt 44926676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 95; Significance: 7e-46; HSPs: 3)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 95; E-Value: 7e-46
Query Start/End: Original strand, 188 - 384
Target Start/End: Complemental strand, 1191 - 989
Alignment:
Q  188 caaaatataacgaaaatggtaagtat--aaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaattt 285  Q
    ||||||||||| ||||||| || ||   |||||||| |||||||||||||||||||||||||||||| ||||| ||||||   |||||||||||| ||||    
T  1191 caaaatataacaaaaatgggaactaatcaaccaagaaaagaaagaataaattatttctaaaattaaagtttggatcattt---caagcatgtgagcattt 1095  T
Q  286 aatgaattgatgagagacgttagattaaagttggattaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatcccata 378  Q
    ||| ||||||||||||||||| |||||| |||| ||||||||||| ||||||||||||||||       |||| || |||||||||||||||||||||||    
T  1094 aataaattgatgagagacgttggattaatgttgaattaatggttaggatttggtgtcaaatttaatttgacactttggtgtcatttgatcctatcccata 995  T
Q  379 tatata 384  Q
    ||||||    
T  994 tatata 989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155; HSP #2
Raw Score: 91; E-Value: 2e-43
Query Start/End: Original strand, 213 - 343
Target Start/End: Original strand, 1668 - 1798
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    |||||||||||||||||||||  ||||||||||||||||||||||  ||||||||||||| || |||| ||||||||||||||||||||||||  |||||    
T  1668 taaccaagagaagaaagaatattttatttctaaaattaaaatttgcatcatttgatcaagtatttgagtatttaatgaattgatgagagacgtcggatta 1767  T
Q  313 aagttggattaatggttatgatttggtgtca 343  Q
    ||||| |||||||||||||||||||||||||    
T  1768 aagtttgattaatggttatgatttggtgtca 1798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 119
Target Start/End: Complemental strand, 1371 - 1304
Alignment:
Q  52 catgaactcaagaattatatgatccatcaaatgaaagagtagctaatacaaacaggatacaaagataa 119  Q
    ||||||||||||||| |||  || || |||||||||| ||||| |||| ||||| |||||||||||||    
T  1371 catgaactcaagaataataccatacaacaaatgaaagcgtagccaatataaacatgatacaaagataa 1304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 7e-46; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 7e-46
Query Start/End: Original strand, 213 - 347
Target Start/End: Complemental strand, 42519809 - 42519675
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    |||||||||||||||||||||  ||||||||||||||||||||||  ||||||||||||| || |||| ||||||||||||||||||||||||  |||||    
T  42519809 taaccaagagaagaaagaatattttatttctaaaattaaaatttgcatcatttgatcaagtatttgagtatttaatgaattgatgagagacgtcggatta 42519710  T
Q  313 aagttggattaatggttatgatttggtgtcaaatt 347  Q
    ||||| |||||||||||||||||||||||||||||    
T  42519709 aagtttgattaatggttatgatttggtgtcaaatt 42519675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 186 - 347
Target Start/End: Original strand, 42520289 - 42520452
Alignment:
Q  186 tgcaaaatataacgaaaatggtaagtat--aaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaat 283  Q
    ||||||||||||| ||||||| || ||   |||||||| ||||||||||| |||||||||||||||||| ||||| |||||| |||||||||||||| ||    
T  42520289 tgcaaaatataacaaaaatgggaactaatcaaccaagaaaagaaagaatacattatttctaaaattaaagtttggatcatttcatcaagcatgtgagcat 42520388  T
Q  284 ttaatgaattgatgagagacgttagattaaagttggattaatggttatgatttggtgtcaaatt 347  Q
    ||||||||||||||||||||||| |||||| |||| |||||||||||  |||||||||||||||    
T  42520389 ttaatgaattgatgagagacgttggattaatgttgaattaatggttagaatttggtgtcaaatt 42520452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 2e-37
Query Start/End: Original strand, 213 - 384
Target Start/End: Original strand, 42521578 - 42521756
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    ||||||| ||||||||||||||||||||||||||| |||||  ||| ||| ||||||||||||||||| | ||||||| || ||||||| ||||||||||    
T  42521578 taaccaaaagaagaaagaataaattatttctaaaaataaaaggtgggtcacttgatcaagcatgtgagcacttaatgagtttatgagagccgttagatta 42521677  T
Q  313 aagttggattaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatcccatatatata 384  Q
    ||   | |||||||| || ||||||||||||||||       ||||||| |||||||||||||||||||||||||||||    
T  42521678 aaaccgtattaatggctaggatttggtgtcaaatttaatttgacaccttggtgtcatttgatcctatcccatatatata 42521756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 6e-31
Query Start/End: Original strand, 221 - 384
Target Start/End: Original strand, 23206089 - 23206260
Alignment:
Q  221 agaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttgga 320  Q
    ||||||||||||||||||||||||||| |||||  ||| ||| ||||||||||||||||| | ||||||| || ||||||| ||||||||||||   | |    
T  23206089 agaagaaagaataaattatttctaaaaataaaaggtgggtcacttgatcaagcatgtgagcacttaatgagtttatgagagccgttagattaaaaccgta 23206188  T
Q  321 ttaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatccc-atatatata 384  Q
    ||||||| || ||||||||||||||||       ||||||| |||||||||||||||||||| |||||||||    
T  23206189 ttaatggctaggatttggtgtcaaatttaatttgacaccttggtgtcatttgatcctatccctatatatata 23206260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 213 - 384
Target Start/End: Original strand, 21147984 - 21148162
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    ||||||| ||||||||||||||||||||||||||| |||||  ||| ||| ||||||||||||||||  | ||||||| || ||| ||| ||||||||||    
T  21147984 taaccaaaagaagaaagaataaattatttctaaaaataaaagatgggtcacttgatcaagcatgtgaacacttaatgagtttatgggagccgttagatta 21148083  T
Q  313 aagttggattaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatcccatatatata 384  Q
    ||   | |||||||| || ||||||||||||||||       ||||||| |||||||||||||||||| ||||||||||    
T  21148084 aaaccgtattaatggctaggatttggtgtcaaatttaatttgacaccttggtgtcatttgatcctatctcatatatata 21148162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 9e-30
Query Start/End: Original strand, 213 - 375
Target Start/End: Complemental strand, 42520786 - 42520617
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    ||||||| ||||||||||||||||||||||||||| |||||  ||| ||| ||||||||||||||||| | ||||||| || ||||||| ||||||||||    
T  42520786 taaccaaaagaagaaagaataaattatttctaaaaataaaaggtgggtcacttgatcaagcatgtgagcacttaatgagtttatgagagtcgttagatta 42520687  T
Q  313 aagttggattaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatccc 375  Q
    ||   | |||||||| || |||||||||| |||||       ||||||| ||||||||||||||||||||    
T  42520686 aaaccgtattaatggctaggatttggtgtaaaatttaatatgacaccttggtgtcatttgatcctatccc 42520617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 221 - 383
Target Start/End: Complemental strand, 21146097 - 21145927
Alignment:
Q  221 agaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttgga 320  Q
    |||||||||  |||||||||||||||| |||||  ||| ||| ||||||||||||||||| | ||||||| || ||| ||| ||||||||||||   | |    
T  21146097 agaagaaagtttaaattatttctaaaaataaaaggtgggtcacttgatcaagcatgtgagcacttaatgagtttatgggagccgttagattaaaaccgta 21145998  T
Q  321 ttaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatccc-atatatat 383  Q
    ||||||| || ||||||||||||||||       ||||||| |||||||||||||||||||| ||||||||    
T  21145997 ttaatggctaggatttggtgtcaaatttaatttgacaccttggtgtcatttgatcctatccctatatatat 21145927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 297
Target Start/End: Complemental strand, 31218851 - 31218780
Alignment:
Q  226 aaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatg 297  Q
    ||||||||||||||||||||||||||||  ||| |||||||||||| | |||||| |||| |||||||||||    
T  31218851 aaagaataaattatttctaaaattaaaaggtgggtcatttgatcaaccttgtgagcatttgatgaattgatg 31218780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 119
Target Start/End: Original strand, 42520106 - 42520173
Alignment:
Q  52 catgaactcaagaattatatgatccatcaaatgaaagagtagctaatacaaacaggatacaaagataa 119  Q
    ||||||||||||||| |||  || || |||||||||| ||||| |||| ||||| |||||||||||||    
T  42520106 catgaactcaagaataataccatacaacaaatgaaagcgtagccaatataaacatgatacaaagataa 42520173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 347
Target Start/End: Original strand, 31219884 - 31220010
Alignment:
Q  221 agaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttgga 320  Q
    |||||||||||||||||| || |||||||||||  | | |||||||||||||| | |||| |  | |||||||||||  || ||||| ||||||  || |    
T  31219884 agaagaaagaataaattaattttaaaattaaaaggtaggtcatttgatcaagcttatgagcacatgatgaattgatggaagccgttacattaaaactgta 31219983  T
Q  321 ttaatggttatgatttggtgtcaaatt 347  Q
    ||||||   | ||||| ||||||||||    
T  31219984 ttaatgacgaagatttagtgtcaaatt 31220010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 77; Significance: 4e-35; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 77; E-Value: 4e-35
Query Start/End: Original strand, 213 - 384
Target Start/End: Complemental strand, 105679 - 105501
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    ||||||| ||||||||||||||||||||||||||| |||||  ||  ||| ||||||||||||||||  |  ||||||||||||| ||| ||||||||||    
T  105679 taaccaaaagaagaaagaataaattatttctaaaaataaaagatgcgtcacttgatcaagcatgtgaacacataatgaattgatgggagccgttagatta 105580  T
Q  313 aagttggattaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatcccatatatata 384  Q
    ||   | ||||||||||| ||||||||||||||||       ||||||| |||||||||||||||||||||||||||||    
T  105579 aaaccgtattaatggttaagatttggtgtcaaatttaatttgacaccttggtgtcatttgatcctatcccatatatata 105501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 213 - 384
Target Start/End: Original strand, 106176 - 106355
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    ||||||| |||| |||||||||||||||||||||| |||||  ||| ||| ||||||||||||||||| | |||||||||||||| | | ||||||||||    
T  106176 taaccaaaagaataaagaataaattatttctaaaaataaaagatggatcacttgatcaagcatgtgagcacttaatgaattgatgggcgccgttagatta 106275  T
Q  313 aagttggattaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatccc-atatatata 384  Q
    |    | ||||||||||| ||||||||||||||||       ||||||| ||||||||||||| |||||| |||||||||    
T  106276 agcccgtattaatggttaggatttggtgtcaaatttaatttgacaccttggtgtcatttgatcatatccctatatatata 106355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 70; Significance: 6e-31; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 70; E-Value: 6e-31
Query Start/End: Original strand, 213 - 384
Target Start/End: Complemental strand, 25783 - 25604
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    ||||||| ||||||||||||||||||||||||||| |||||  |   ||| ||||||||||||||||  | |||||||||||||||||||||||||||||    
T  25783 taaccaaaagaagaaagaataaattatttctaaaaataaaacatttgtcacttgatcaagcatgtgaacacttaatgaattgatgagagacgttagatta 25684  T
Q  313 aagttggattaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatccc-atatatata 384  Q
    ||  || |||||||| |  ||||||||||||||||       |||| || |||||||||||||||||||| |||||||||    
T  25683 aaactgtattaatggctgggatttggtgtcaaatttaatttgacacattggtgtcatttgatcctatccctatatatata 25604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 68; Significance: 9e-30; HSPs: 8)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 68; E-Value: 9e-30
Query Start/End: Original strand, 401 - 534
Target Start/End: Complemental strand, 42158 - 42024
Alignment:
Q  401 aatatcaagaatcatg-aatttagtctaacataaatatcaaagtagccaatggttcaaataaa-attagattataaatgtaaaatcttcttgaaatatat 498  Q
    ||||||||||| | || ||| |||||||||||||||||||||||||||||||||||| || |  |||||| |||||| ||||||||||||||||||||||    
T  42158 aatatcaagaaccgtgcaatctagtctaacataaatatcaaagtagccaatggttcagattattattagactataaa-gtaaaatcttcttgaaatatat 42060  T
Q  499 atcaacgtgccaggaccagtcacatcattgctaata 534  Q
    |||||| | |||| |||||||||||||||| |||||    
T  42059 atcaacataccagaaccagtcacatcattgataata 42024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 753 - 843
Target Start/End: Complemental strand, 21640 - 21550
Alignment:
Q  753 tcatcactcatcatataagagtgcaatttcacaattttaaagaattttaacaattttaaagcactgattcctttcaaaattcattttgcta 843  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||  || ||||||||||||||||    
T  21640 tcatcactaatcatataaaagtgcaatttcacaattttaaagaattttaacaaatttaaagcactgattcacttaaaaattcattttgcta 21550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 508 - 571
Target Start/End: Complemental strand, 25520 - 25457
Alignment:
Q  508 ccaggaccagtcacatcattgctaatattctagaatctatgcaagactgcctccaatgttgaat 571  Q
    |||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  25520 ccagcaccagtcacatcattgctaatattcaacaatctatgcaagactgcctccaatgttgaat 25457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 572 - 622
Target Start/End: Complemental strand, 25299 - 25249
Alignment:
Q  572 aacatgaatttcctaacggatatcaggacaaaatgtttgtagggttatgtc 622  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  25299 aacatgaatttcctaacgaatatcaggacaaaatgtttgtagggttatgtc 25249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #5
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 401 - 453
Target Start/End: Complemental strand, 25590 - 25538
Alignment:
Q  401 aatatcaagaatcatgaatttagtctaacataaatatcaaagtagccaatggt 453  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  25590 aatatcaagaatcatgaatctagtctaacataaatatcaaagtagcaaatggt 25538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 747 - 789
Target Start/End: Complemental strand, 24716 - 24674
Alignment:
Q  747 gtaaggtcatcactcatcatataagagtgcaatttcacaattt 789  Q
    |||||||||||||||||||||||| |||||||||||| |||||    
T  24716 gtaaggtcatcactcatcatataaaagtgcaatttcaaaattt 24674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 635 - 685
Target Start/End: Complemental strand, 25210 - 25158
Alignment:
Q  635 ttttcaatcatggaacatggaaggaaacacctcat--aaaacctttattgaaa 685  Q
    |||||||| ||||||||||||||||||||||||||  ||||||||||| ||||    
T  25210 ttttcaattatggaacatggaaggaaacacctcattaaaaacctttatagaaa 25158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 676 - 710
Target Start/End: Complemental strand, 25147 - 25113
Alignment:
Q  676 tttattgaaaacatactaaaattggtttttagcca 710  Q
    |||||||||||||||| ||||||||||||||||||    
T  25147 tttattgaaaacataccaaaattggtttttagcca 25113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0301 (Bit Score: 62; Significance: 3e-26; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 213 - 384
Target Start/End: Complemental strand, 20897 - 20721
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    ||||||| |||||||||||||||||||||||||||||||||  ||| ||| |||||||| |||||||  | |||||||||| ||  ||| | ||||||||    
T  20897 taaccaaaagaagaaagaataaattatttctaaaattaaaaggtggatcacttgatcaaacatgtgatcacttaatgaattaat--gagccattagatta 20800  T
Q  313 aagttggattaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatcccatatatata 384  Q
    || | | |||||||| || ||||| ||||||||||       ||||||| |||||||||||||||||| ||||||||||    
T  20799 aaatagtattaatggctaggatttagtgtcaaatttaatttgacaccttggtgtcatttgatcctatctcatatatata 20721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0853 (Bit Score: 50; Significance: 5e-19; HSPs: 2)
Name: scaffold0853
Description:

Target: scaffold0853; HSP #1
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 213 - 314
Target Start/End: Original strand, 2211 - 2312
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    ||||||| ||||||||||||||||||||||||||| |||||  ||| ||| ||||||||||||||||| | ||||||| || |||  || ||||||||||    
T  2211 taaccaaaagaagaaagaataaattatttctaaaaataaaaggtgggtcacttgatcaagcatgtgagcacttaatgagtttatggaagccgttagatta 2310  T
Q  313 aa 314  Q
    ||    
T  2311 aa 2312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0853; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 213 - 384
Target Start/End: Complemental strand, 779 - 606
Alignment:
Q  213 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 312  Q
    ||||||| ||||||||||||||||||||||||||| |||||  ||| ||| ||||||     |||||| | ||||||| || ||| ||| ||||||||||    
T  779 taaccaaaagaagaaagaataaattatttctaaaaataaaaggtggatcacttgatc-----tgtgagcacttaatgagtttatgggagccgttagatta 685  T
Q  313 aagttggattaatggttatgatttggtgtcaaatt-------acaccttagtgtcatttgatcctatcccatatatata 384  Q
    ||   | |||||||| || ||| ||||||||||||       |||| || |||||||||||||||||||||||||||||    
T  684 aaaccgtattaatggctaggatctggtgtcaaatttaatttgacacattggtgtcatttgatcctatcccatatatata 606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1513 times since January 2019
Visitors: 1423