View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0134-Insertion-3 (Length: 907)
Name: NF0134-Insertion-3
Description: NF0134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0134-Insertion-3 |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 423 - 852
Target Start/End: Complemental strand, 28640536 - 28640116
Alignment:
| Q |
423 |
ctacactgtacagaatcaggttctcatagagtccacagaccacaatgaggaggtccgggaggctaggcggaggggaggcatgtaccatgatgtatgctct |
522 |
Q |
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| T |
28640536 |
ctacactctacagaatcaggttctcatagagtccacagaccacaatgaggaggtccgggaggctaggcggaggggaggcatgtactatgatgtatgctct |
28640437 |
T |
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| Q |
523 |
tagataataaaattgggtttatgctattgggcatttatatttctaattgaatagagtccattagtttataaatatatatgacttttacttttctcaccct |
622 |
Q |
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| T |
28640436 |
tagataataaaattgggtttatgctattgggcatttatatttctaattgaatagagttcattagtttataaatatatatgacttttacttttctcgccct |
28640337 |
T |
|
| Q |
623 |
agtttataaatatattagtctattcggattttaaaatcccgaaacagttagttatgtatttttggattttagaatgcaaattaaaacgaattacattttg |
722 |
Q |
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| T |
28640336 |
aatttataaatatattagtctattcggattttaaaat-ccgaaacagtttgttaggtatttttggattttagaatccaaattaaaacgaactacaatttg |
28640238 |
T |
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| Q |
723 |
tatatttgtatttgacatcaaaagtatctgcagatcgccgtagaaattcccgcataaactacaaagcattgcagggattctatgagtatgaacgggttag |
822 |
Q |
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| T |
28640237 |
tatatttgtatttgacatcaaaagtctctgctgatcgccgtag-aatttccgcataaactacaaagc------gggattctatgagtatgaac-ggtcag |
28640146 |
T |
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| Q |
823 |
tgaccatgacatcataaacactcctaaaaa |
852 |
Q |
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| T |
28640145 |
tgaccatgacatcataaacactcctaaaaa |
28640116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 170 - 391
Target Start/End: Complemental strand, 28640796 - 28640568
Alignment:
| Q |
170 |
ttgaagtacatggagaagaagaaaaaatattgaagtacatgaagtaaatgtcgtgaattgaaaactgcatataggcatatgtcaacttgaataacgtaaa |
269 |
Q |
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| T |
28640796 |
ttgaagtacatggagaagaagaaaaaatattgaagtacatgaagtaaatgtcgtgaattgaaaactgcatacaggcatatgtcaacttgaataacgtaaa |
28640697 |
T |
|
| Q |
270 |
agctatttttctttac----tatagtatttcttttggatgaatttaaaggctttacttagaaatttaaacaaggacaattttggtagcttatatacc--- |
362 |
Q |
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| T |
28640696 |
agctatttttctttactatatatagtatttcttttggatgaatttaaaggcttaacttagaaatttaaacaaggacaattttggtagcttatataccttt |
28640597 |
T |
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| Q |
363 |
ttttttatttgttacaaagctaaaggaac |
391 |
Q |
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| T |
28640596 |
ttttttttttgttacaaagctaaaggaac |
28640568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 8 - 170
Target Start/End: Complemental strand, 28646101 - 28645939
Alignment:
| Q |
8 |
caatcatgtttactactatggctccatgaattccttggtagaagaccttgaaatggtacccaannnnnnnccaccaaatctgaaataatcgacaatacac |
107 |
Q |
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| T |
28646101 |
caatcatgttaactactatggctccatgaattccttggtagaagaccttgaaatggtacccaatttttttccaccaaatctgaaataatcgacaatacac |
28646002 |
T |
|
| Q |
108 |
atgtttaactaacgcaaataatatttaaatttttccatgggaacacacaagggatcaatgaat |
170 |
Q |
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| T |
28646001 |
atgtttaactaacgcaaagaatatttaaattttgccatgggaacacgcaagggatcaatgaat |
28645939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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