View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0134-Insertion-4 (Length: 704)

Name: NF0134-Insertion-4
Description: NF0134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0134-Insertion-4
NF0134-Insertion-4
[»] chr4 (41 HSPs)
chr4 (28-545)||(44188682-44189196)
chr4 (545-704)||(44188486-44188645)
chr4 (173-221)||(38453262-38453310)
chr4 (178-221)||(22040652-22040695)
chr4 (167-221)||(52270046-52270100)
chr4 (168-221)||(2186349-2186402)
chr4 (176-221)||(28435264-28435309)
chr4 (173-221)||(16304114-16304162)
chr4 (173-221)||(36203233-36203281)
chr4 (173-221)||(39171386-39171434)
chr4 (173-221)||(43374288-43374336)
chr4 (174-221)||(12698595-12698642)
chr4 (182-221)||(49308826-49308865)
chr4 (173-219)||(14577525-14577571)
chr4 (173-215)||(16432979-16433021)
chr4 (173-219)||(19332319-19332365)
chr4 (176-221)||(20383488-20383533)
chr4 (176-221)||(34247440-34247485)
chr4 (168-221)||(43722757-43722810)
chr4 (168-221)||(50362155-50362208)
chr4 (168-221)||(54162691-54162744)
chr4 (160-221)||(56564999-56565060)
chr4 (169-221)||(2430990-2431042)
chr4 (173-221)||(5520130-5520177)
chr4 (173-221)||(6459940-6459988)
chr4 (173-221)||(7230277-7230325)
chr4 (173-221)||(9946424-9946472)
chr4 (177-221)||(11949779-11949823)
chr4 (176-220)||(16743301-16743345)
chr4 (173-221)||(17629709-17629757)
chr4 (181-221)||(19347335-19347375)
chr4 (176-220)||(19854565-19854609)
chr4 (173-221)||(19935177-19935225)
chr4 (173-221)||(20799410-20799458)
chr4 (173-221)||(21052573-21052621)
chr4 (173-221)||(23809946-23809994)
chr4 (173-221)||(24665007-24665055)
chr4 (173-221)||(30051883-30051931)
chr4 (176-212)||(35997999-35998035)
chr4 (173-221)||(43034358-43034406)
chr4 (173-221)||(46745187-46745235)
[»] scaffold0066 (1 HSPs)
scaffold0066 (176-221)||(17504-17549)
[»] chr1 (32 HSPs)
chr1 (173-221)||(44641524-44641572)
chr1 (176-221)||(3393584-3393629)
chr1 (176-221)||(34521206-34521251)
chr1 (168-221)||(42045388-42045441)
chr1 (173-221)||(7158770-7158818)
chr1 (173-221)||(24324416-24324464)
chr1 (173-221)||(26755613-26755661)
chr1 (174-221)||(16967210-16967257)
chr1 (173-220)||(27449462-27449509)
chr1 (175-221)||(5907798-5907844)
chr1 (174-216)||(9116893-9116935)
chr1 (175-221)||(17396707-17396753)
chr1 (175-221)||(24124846-24124892)
chr1 (175-221)||(45140022-45140068)
chr1 (173-215)||(51127912-51127954)
chr1 (176-221)||(8253739-8253784)
chr1 (176-221)||(17917154-17917199)
chr1 (176-221)||(35011393-35011438)
chr1 (176-221)||(47961305-47961350)
chr1 (176-221)||(49868011-49868056)
chr1 (173-221)||(3509957-3510005)
chr1 (168-212)||(4448193-4448237)
chr1 (173-221)||(16826351-16826399)
chr1 (173-221)||(21400039-21400087)
chr1 (173-221)||(25532970-25533018)
chr1 (173-221)||(29233990-29234038)
chr1 (177-221)||(29987128-29987172)
chr1 (173-217)||(31890769-31890813)
chr1 (173-221)||(41974758-41974806)
chr1 (173-221)||(48681949-48681997)
chr1 (173-221)||(49183170-49183218)
chr1 (173-221)||(52441527-52441575)
[»] chr2 (39 HSPs)
chr2 (174-221)||(25186258-25186305)
chr2 (176-221)||(29734691-29734736)
chr2 (168-221)||(33063978-33064031)
chr2 (173-221)||(1861825-1861873)
chr2 (166-221)||(16877114-16877169)
chr2 (166-221)||(16989245-16989300)
chr2 (173-220)||(34464426-34464473)
chr2 (175-221)||(39761437-39761483)
chr2 (168-221)||(9519730-9519783)
chr2 (168-221)||(27244649-27244702)
chr2 (168-221)||(31543004-31543057)
chr2 (173-221)||(3197095-3197143)
chr2 (173-221)||(4122029-4122077)
chr2 (173-221)||(6723093-6723141)
chr2 (173-221)||(9383225-9383273)
chr2 (177-221)||(41526792-41526836)
chr2 (173-221)||(42791292-42791340)
chr2 (173-221)||(43117206-43117254)
chr2 (173-220)||(10195679-10195726)
chr2 (175-221)||(12124544-12124590)
chr2 (176-222)||(37119273-37119319)
chr2 (173-221)||(19976150-19976199)
chr2 (175-220)||(28771581-28771626)
chr2 (175-220)||(39068725-39068770)
chr2 (175-215)||(434745-434785)
chr2 (173-221)||(2256968-2257016)
chr2 (171-219)||(4958648-4958696)
chr2 (167-219)||(7350537-7350589)
chr2 (173-221)||(10332291-10332339)
chr2 (173-221)||(19967415-19967463)
chr2 (173-221)||(20455888-20455936)
chr2 (173-221)||(20565091-20565139)
chr2 (173-221)||(22523028-22523076)
chr2 (173-221)||(25598578-25598626)
chr2 (173-221)||(27411089-27411137)
chr2 (173-221)||(34977201-34977249)
chr2 (173-221)||(35287680-35287728)
chr2 (177-221)||(35685077-35685121)
chr2 (173-221)||(44526125-44526173)
[»] chr8 (27 HSPs)
chr8 (160-221)||(8717491-8717552)
chr8 (173-221)||(27718910-27718958)
chr8 (173-219)||(37750017-37750063)
chr8 (173-221)||(6447186-6447234)
chr8 (173-221)||(12714386-12714434)
chr8 (177-221)||(26991773-26991817)
chr8 (173-219)||(37938492-37938538)
chr8 (176-221)||(12910822-12910867)
chr8 (176-221)||(30427731-30427776)
chr8 (173-221)||(498728-498776)
chr8 (173-221)||(1877678-1877726)
chr8 (173-221)||(6314339-6314387)
chr8 (173-221)||(7553676-7553724)
chr8 (173-221)||(11708983-11709031)
chr8 (168-220)||(13286123-13286175)
chr8 (173-221)||(13357457-13357505)
chr8 (173-221)||(14303162-14303210)
chr8 (173-221)||(17704010-17704058)
chr8 (173-221)||(19163552-19163600)
chr8 (173-221)||(22948097-22948145)
chr8 (173-221)||(23852908-23852956)
chr8 (176-220)||(24696023-24696067)
chr8 (177-221)||(29652219-29652263)
chr8 (173-221)||(32555251-32555299)
chr8 (173-221)||(33451365-33451413)
chr8 (173-221)||(33482165-33482213)
chr8 (173-221)||(39821881-39821929)
[»] chr5 (27 HSPs)
chr5 (168-221)||(6624768-6624821)
chr5 (173-221)||(32200463-32200511)
chr5 (173-219)||(8350667-8350713)
chr5 (173-219)||(39610359-39610405)
chr5 (168-221)||(40445975-40446028)
chr5 (173-221)||(37932327-37932375)
chr5 (173-221)||(40715965-40716013)
chr5 (174-221)||(28757812-28757859)
chr5 (173-224)||(34436848-34436899)
chr5 (173-219)||(17861976-17862022)
chr5 (175-221)||(25604016-25604062)
chr5 (176-221)||(16076431-16076476)
chr5 (177-218)||(18147719-18147760)
chr5 (176-221)||(18489092-18489137)
chr5 (175-216)||(22394034-22394075)
chr5 (173-221)||(6489004-6489052)
chr5 (173-221)||(8545005-8545053)
chr5 (173-221)||(15889408-15889456)
chr5 (173-221)||(16036824-16036872)
chr5 (173-221)||(16133081-16133129)
chr5 (173-221)||(22522817-22522865)
chr5 (173-221)||(24485696-24485744)
chr5 (173-221)||(26590704-26590752)
chr5 (173-221)||(27903110-27903158)
chr5 (173-221)||(28207129-28207177)
chr5 (173-221)||(36321510-36321558)
chr5 (173-221)||(42505869-42505917)
[»] scaffold0118 (1 HSPs)
scaffold0118 (169-221)||(39991-40043)
[»] chr7 (28 HSPs)
chr7 (173-221)||(44558790-44558838)
chr7 (173-219)||(35142167-35142213)
chr7 (168-221)||(30857240-30857293)
chr7 (176-220)||(3672569-3672613)
chr7 (173-221)||(10244724-10244772)
chr7 (173-221)||(27772032-27772080)
chr7 (173-221)||(40762223-40762271)
chr7 (173-221)||(48069853-48069901)
chr7 (173-220)||(25246768-25246815)
chr7 (173-220)||(39801703-39801750)
chr7 (166-221)||(42336060-42336115)
chr7 (177-219)||(45200194-45200236)
chr7 (175-216)||(8227348-8227389)
chr7 (176-221)||(19599145-19599190)
chr7 (167-216)||(20205813-20205862)
chr7 (174-219)||(39926556-39926601)
chr7 (173-221)||(1051786-1051834)
chr7 (173-221)||(1399159-1399207)
chr7 (173-221)||(3953438-3953486)
chr7 (173-221)||(5458087-5458135)
chr7 (168-220)||(8683062-8683114)
chr7 (173-221)||(19416511-19416559)
chr7 (173-221)||(27462452-27462500)
chr7 (173-221)||(29726797-29726845)
chr7 (173-221)||(35222921-35222969)
chr7 (174-218)||(40200974-40201018)
chr7 (173-221)||(41527557-41527605)
chr7 (173-221)||(49063774-49063822)
[»] chr6 (16 HSPs)
chr6 (167-221)||(32053779-32053833)
chr6 (168-221)||(10780123-10780176)
chr6 (168-221)||(21373422-21373475)
chr6 (176-221)||(24623333-24623378)
chr6 (173-221)||(18256880-18256928)
chr6 (173-221)||(20744135-20744183)
chr6 (173-216)||(10902337-10902380)
chr6 (174-220)||(3373398-3373444)
chr6 (173-221)||(1918474-1918522)
chr6 (176-220)||(2692215-2692259)
chr6 (173-221)||(11982548-11982596)
chr6 (173-221)||(12204366-12204414)
chr6 (173-221)||(13496113-13496161)
chr6 (173-221)||(17382081-17382129)
chr6 (173-221)||(32193875-32193923)
chr6 (173-221)||(33938695-33938743)
[»] scaffold0180 (1 HSPs)
scaffold0180 (173-221)||(17729-17777)
[»] chr3 (29 HSPs)
chr3 (173-221)||(7827505-7827553)
chr3 (173-221)||(7829893-7829941)
chr3 (173-221)||(10498711-10498759)
chr3 (173-221)||(20370297-20370345)
chr3 (173-221)||(21331433-21331481)
chr3 (177-221)||(51505874-51505918)
chr3 (170-221)||(39779018-39779069)
chr3 (162-221)||(43345023-43345082)
chr3 (175-221)||(12976618-12976664)
chr3 (173-219)||(37921016-37921062)
chr3 (171-221)||(43490433-43490483)
chr3 (173-219)||(51402731-51402777)
chr3 (168-221)||(16980370-16980423)
chr3 (168-221)||(21506774-21506827)
chr3 (176-221)||(53996299-53996344)
chr3 (173-221)||(1149085-1149133)
chr3 (173-221)||(3755336-3755384)
chr3 (173-221)||(4216415-4216463)
chr3 (173-221)||(7824804-7824852)
chr3 (173-221)||(17507715-17507763)
chr3 (173-221)||(18870741-18870789)
chr3 (173-221)||(20537879-20537927)
chr3 (173-221)||(20612293-20612341)
chr3 (173-221)||(25340940-25340988)
chr3 (177-221)||(29631187-29631231)
chr3 (173-221)||(44579633-44579681)
chr3 (175-219)||(47039426-47039470)
chr3 (173-221)||(53162195-53162243)
chr3 (177-221)||(54230115-54230159)
[»] scaffold0122 (2 HSPs)
scaffold0122 (178-220)||(31172-31214)
scaffold0122 (173-221)||(14202-14250)
[»] scaffold0005 (1 HSPs)
scaffold0005 (173-219)||(239804-239850)
[»] scaffold0334 (1 HSPs)
scaffold0334 (176-221)||(5182-5227)
[»] scaffold0188 (1 HSPs)
scaffold0188 (173-221)||(28129-28177)
[»] scaffold0143 (1 HSPs)
scaffold0143 (173-221)||(4463-4511)
[»] scaffold0040 (1 HSPs)
scaffold0040 (173-221)||(56781-56829)


Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 28 - 545
Target Start/End: Complemental strand, 44189196 - 44188682
Alignment:
Q  28 ttcactagcgacgtggcaatgtatactttttaataataaaaattggaatttacctaccgaatttgtatacaattaattacgcttaaatgtttaaaagaac 127  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44189196 ttcactagcgatgtggcaatgtatactttttaataataaaaattggaatttacctaccgaatttgtatacaattaattacgcttaaatgtttaaaagaac 44189097  T
Q  128 acataacgactcttttgtatgttatgaataccatatataaatgtgctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagggccacc 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||    
T  44189096 acataacgactcttttgtatgttatgaataccatatataaatgtgctcgtgagtttagctcagttggcatggataatgcataatatatgcaagggccacc 44188997  T
Q  228 acnnnnnnnnnnnnnnntcatatataaatgaattacactcaactttttgaacaattttctcctcataaaataattttaaaatatatttggttccatgctt 327  Q
    ||               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||    
T  44188996 ac-----aaaaaaaaaatcatatataaatgaattacactcaactttttgaacaattttctcctcataaaataattttaaaatacatatggttccatgatt 44188902  T
Q  328 aatattccgattagtgattataatt--tnnnnnnnnnnnnntaataggtaaaagtaagctaggctcaaaggcccctgaaacaatacaagtccctctatgt 425  Q
    |||||||||||||||||||||||||                |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  44188901 aatattccgattagtgattataattgaaaaataaaataaaataataggtaaaagtaagctaggctcaaaggtcactgaaacaatacaagtccctctatgt 44188802  T
Q  426 ccttcggtgttggcattaaagacaagttgcacagatagatgactggcagcaaccaattcctaggacacaacaggtgctgagaatgcttttgcaagagtag 525  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44188801 ccttcggtgttggcattaaagacaagttgcacaaatagatgactggcagcaaccaattcctaggacacaacaggtgctgagaatgcttttgcaagagtag 44188702  T
Q  526 tgtactacctacggtataat 545  Q
    ||||||||||| ||||||||    
T  44188701 tgtactacctatggtataat 44188682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 160; E-Value: 7e-85
Query Start/End: Original strand, 545 - 704
Target Start/End: Complemental strand, 44188645 - 44188486
Alignment:
Q  545 tcttatacgaattcggaatcggggacccgagattggttattgtatgaacaaggtatggcaaattatgtcccaactactgcatttgcaatctcattagaat 644  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44188645 tcttatacgaattcggaatcggggacccgagattggttattgtatgaacaaggtatggcaaattatgtcccaactactgcatttgcaatctcattagaat 44188546  T
Q  645 gttgtcaaaagaattctttgatatctcaaacggaccactgatattggtcttgtttagcag 704  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44188545 gttgtcaaaagaattctttgatatctcaaacggaccactgatattggtcttgtttagcag 44188486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 38453262 - 38453310
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| || |||||||||||||||||||||||||||    
T  38453262 ctcgtgagcttagctcagttggcatggacaatgcataatatatgcaagg 38453310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 178 - 221
Target Start/End: Original strand, 22040652 - 22040695
Alignment:
Q  178 gagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||    
T  22040652 gagtttagctcagttgatatggacaatgcataatatatgcaagg 22040695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 221
Target Start/End: Complemental strand, 52270100 - 52270046
Alignment:
Q  167 aatgtgctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    ||||| |||||||| ||||||||| ||  ||||||||||||||||||||||||||    
T  52270100 aatgtcctcgtgagcttagctcagttggtatggacaatgcataatatatgcaagg 52270046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 2186402 - 2186349
Alignment:
Q  168 atgtgctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||| |||||||| ||||||||| ||  ||||||||||||||||||||||||||    
T  2186402 atgtcctcgtgagcttagctcagttggtatggacaatgcataatatatgcaagg 2186349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 221
Target Start/End: Complemental strand, 28435309 - 28435264
Alignment:
Q  176 gtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    ||||||||||||||| ||  ||||||||||||||||||||||||||    
T  28435309 gtgagtttagctcagttggtatggacaatgcataatatatgcaagg 28435264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 16304162 - 16304114
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    ||||| |||||||||||| ||  ||||||||||||||||||||||||||    
T  16304162 ctcgtaagtttagctcagttggtatggacaatgcataatatatgcaagg 16304114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 36203233 - 36203281
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||| | ||||||||||||||||||||||||    
T  36203233 ctcgtgagcttagctcagttgataaggacaatgcataatatatgcaagg 36203281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 39171434 - 39171386
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||| ||||||||||||||| ||||||||||    
T  39171434 ctcgtgagcttagctcagttgatatggacaatgcataaaatatgcaagg 39171386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 43374336 - 43374288
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||| ||||||||||||||| ||||||||||    
T  43374336 ctcgtgagcttagctcagttgatatggacaatgcataaaatatgcaagg 43374288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 12698595 - 12698642
Alignment:
Q  174 tcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    ||||||| ||||||||| |||  |||||||||||||||||||||||||    
T  12698595 tcgtgagcttagctcagttgatttggacaatgcataatatatgcaagg 12698642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 221
Target Start/End: Original strand, 49308826 - 49308865
Alignment:
Q  182 ttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    ||||||||| ||||| ||||||||||||||||||||||||    
T  49308826 ttagctcagttgacaaggacaatgcataatatatgcaagg 49308865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 173 - 219
Target Start/End: Complemental strand, 14577571 - 14577525
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaa 219  Q
    |||||||||||||||||| ||  | ||||||||||||||||||||||    
T  14577571 ctcgtgagtttagctcagttggtaaggacaatgcataatatatgcaa 14577525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 173 - 215
Target Start/End: Complemental strand, 16433021 - 16432979
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatat 215  Q
    |||||||| ||||||||| |||||| |||||||||||||||||    
T  16433021 ctcgtgagcttagctcagctgacatagacaatgcataatatat 16432979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 173 - 219
Target Start/End: Complemental strand, 19332365 - 19332319
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaa 219  Q
    |||||||| ||| ||||||||| | ||||||||||||||||||||||    
T  19332365 ctcgtgagcttatctcagatgataaggacaatgcataatatatgcaa 19332319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 20383488 - 20383533
Alignment:
Q  176 gtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    ||||| ||||||||| ||  ||||||||||||||||||||||||||    
T  20383488 gtgagcttagctcagttggtatggacaatgcataatatatgcaagg 20383533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 34247440 - 34247485
Alignment:
Q  176 gtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    ||||||||||||||| ||  | ||||||||||||||||||||||||    
T  34247440 gtgagtttagctcagttggtaaggacaatgcataatatatgcaagg 34247485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 43722757 - 43722810
Alignment:
Q  168 atgtgctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||| |||||||||||| ||||| ||  ||||||||||||||||||||| ||||    
T  43722757 atgtcctcgtgagtttaactcagttggtatggacaatgcataatatatgtaagg 43722810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 50362208 - 50362155
Alignment:
Q  168 atgtgctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||| |||||||| ||||||||| ||  | ||||||||||||||||||||||||    
T  50362208 atgtcctcgtgagcttagctcagttggtagggacaatgcataatatatgcaagg 50362155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 54162691 - 54162744
Alignment:
Q  168 atgtgctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||| |||||||||||| ||||| ||  |||||||||||||| |||||||||||    
T  54162691 atgttctcgtgagtttaactcagctggtatggacaatgcatagtatatgcaagg 54162744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 221
Target Start/End: Complemental strand, 56565060 - 56564999
Alignment:
Q  160 atatataaatgtgctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    ||||| || ||| |||||||| ||||||||  ||| ||||||||||||||| ||||||||||    
T  56565060 atatacaattgtcctcgtgagcttagctcaattgatatggacaatgcataaaatatgcaagg 56564999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 2430990 - 2431042
Alignment:
Q  169 tgtgctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||||||||||||||||| ||  || |||||| ||||| ||||||||||    
T  2430990 tgtgctcgtgagtttagctcagttggtattgacaatacataaaatatgcaagg 2431042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 5520130 - 5520177
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||||||| ||||| || || ||||||||||||||||||||||||    
T  5520130 ctcgtgagtttaactcagttg-caaggacaatgcataatatatgcaagg 5520177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 6459988 - 6459940
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||| ||||| ||| ||||||||||||||||||||| ||||    
T  6459988 ctcgtgagcttaactcagttgatatggacaatgcataatatatgtaagg 6459940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 7230277 - 7230325
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||  | ||||||||||||||||||||||||    
T  7230277 ctcgtgagcttagctcagttggtaaggacaatgcataatatatgcaagg 7230325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 9946424 - 9946472
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||  ||||||||||||||| ||||||||||    
T  9946424 ctcgtgagcttagctcagttggtatggacaatgcataaaatatgcaagg 9946472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 11949823 - 11949779
Alignment:
Q  177 tgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||| ||||||||| ||  ||||||||||||||||||||||||||    
T  11949823 tgagcttagctcagttggtatggacaatgcataatatatgcaagg 11949779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 16743345 - 16743301
Alignment:
Q  176 gtgagtttagctcagatgacatggacaatgcataatatatgcaag 220  Q
    ||||| ||||||||| ||| ||||| |||||||||||||||||||    
T  16743345 gtgagcttagctcagttgatatggataatgcataatatatgcaag 16743301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 17629757 - 17629709
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| |||||| || ||||| ||||||||||||||||| ||||||    
T  17629757 ctcgtgagcttagctaagttgacagggacaatgcataatatacgcaagg 17629709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 19347375 - 19347335
Alignment:
Q  181 tttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||||| ||| ||||||||||||||| ||||||||||    
T  19347375 tttagctcagttgatatggacaatgcataaaatatgcaagg 19347335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 19854565 - 19854609
Alignment:
Q  176 gtgagtttagctcagatgacatggacaatgcataatatatgcaag 220  Q
    ||||| ||||||||| ||  |||||||||||||||||||||||||    
T  19854565 gtgagcttagctcagttggtatggacaatgcataatatatgcaag 19854609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 19935225 - 19935177
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||||||||||||| ||| | | |||||||||||| |||||||||    
T  19935225 ctcgtgagtttagctcagttgataagaacaatgcataatctatgcaagg 19935177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 20799458 - 20799410
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||  | ||||||||||||||||||||||||    
T  20799458 ctcgtgagcttagctcagttggtagggacaatgcataatatatgcaagg 20799410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 21052621 - 21052573
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||||||||||||| ||  ||||| ||| ||||||||||||||||    
T  21052621 ctcgtgagtttagctcagttggtatggataatacataatatatgcaagg 21052573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 23809946 - 23809994
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||  |||||||| |||||||||||||||||    
T  23809946 ctcgtgagcttagctcagttggtatggacaaagcataatatatgcaagg 23809994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 24665055 - 24665007
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||  ||||| ||||||||||||||||||||    
T  24665055 ctcgtgagcttagctcagttggtatggagaatgcataatatatgcaagg 24665007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 30051931 - 30051883
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| |||| |||| ||  ||||||||||||||||||||||||||    
T  30051931 ctcgtgagcttagttcagttgttatggacaatgcataatatatgcaagg 30051883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 35997999 - 35998035
Alignment:
Q  176 gtgagtttagctcagatgacatggacaatgcataata 212  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  35997999 gtgagtttagctcagttgatatggacaatgcataata 35998035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 43034406 - 43034358
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||| ||||| ||  ||||||||||||||||||||||||||    
T  43034406 ctcgtgagcttaactcagttggtatggacaatgcataatatatgcaagg 43034358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 46745187 - 46745235
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||| ||||| ||| |||||||||| |||||||||||||||    
T  46745187 ctcgtgagcttatctcagttgatatggacaatgtataatatatgcaagg 46745235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 17504 - 17549
Alignment:
Q  176 gtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  17504 gtgagtttagctcagctgacatggacaatgcataatatatgcaagg 17549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 44641524 - 44641572
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  44641524 ctcgtgagtttagctcagttgatatggacaatgcataatatatgcaagg 44641572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 221
Target Start/End: Complemental strand, 3393629 - 3393584
Alignment:
Q  176 gtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    ||||||||||||||| ||| ||| ||||||||||||||||||||||    
T  3393629 gtgagtttagctcagttgatatgaacaatgcataatatatgcaagg 3393584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 221
Target Start/End: Complemental strand, 34521251 - 34521206
Alignment:
Q  176 gtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    ||||||||||||||| ||  ||||||||||||||||||||||||||    
T  34521251 gtgagtttagctcagttggtatggacaatgcataatatatgcaagg 34521206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 42045441 - 42045388
Alignment:
Q  168 atgtgctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||| |||||||| ||||||||| ||  ||||||||||||||||||||||||||    
T  42045441 atgtcctcgtgagcttagctcagttggtatggacaatgcataatatatgcaagg 42045388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 7158770 - 7158818
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||||||||| ||| ||| ||||||||||||||| ||||||||||    
T  7158770 ctcgtgagtttagcccagttgatatggacaatgcataaaatatgcaagg 7158818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 24324464 - 24324416
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||| | ||||||||||||||||||||||||    
T  24324464 ctcgtgagcttagctcaggtgataaggacaatgcataatatatgcaagg 24324416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 26755613 - 26755661
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||| ||||||||||||| ||||||||||||    
T  26755613 ctcgtgagcttagctcagttgatatggacaatgcattatatatgcaagg 26755661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 16967257 - 16967210
Alignment:
Q  174 tcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    ||||||| |||||| || ||| ||||||||||||||||||||||||||    
T  16967257 tcgtgagcttagcttagttgatatggacaatgcataatatatgcaagg 16967210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 27449509 - 27449462
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaag 220  Q
    |||||||| ||||||||| | | |||||||||||||||||||||||||    
T  27449509 ctcgtgagcttagctcagttaatatggacaatgcataatatatgcaag 27449462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 5907798 - 5907844
Alignment:
Q  175 cgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||| ||||||||| || || ||||||||||||||||||||||||    
T  5907798 cgtgagcttagctcagttggcaaggacaatgcataatatatgcaagg 5907844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 9116935 - 9116893
Alignment:
Q  174 tcgtgagtttagctcagatgacatggacaatgcataatatatg 216  Q
    ||||||||||| ||||| ||| |||||||||||||||||||||    
T  9116935 tcgtgagtttaactcagttgatatggacaatgcataatatatg 9116893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 17396707 - 17396753
Alignment:
Q  175 cgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||| ||||||||| ||||| |||||||||||||||||| |||||    
T  17396707 cgtgagcttagctcagttgacaaggacaatgcataatatattcaagg 17396753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 24124892 - 24124846
Alignment:
Q  175 cgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||||||||||| ||  | ||||||||||||||||||||||||    
T  24124892 cgtgagtttagctcagttgttaaggacaatgcataatatatgcaagg 24124846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 45140068 - 45140022
Alignment:
Q  175 cgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||| ||||||||| ||  ||||||||||||||||||||||||||    
T  45140068 cgtgagcttagctcagttggtatggacaatgcataatatatgcaagg 45140022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 173 - 215
Target Start/End: Complemental strand, 51127954 - 51127912
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatat 215  Q
    |||||||||||||||||| | | ||||||||||||||||||||    
T  51127954 ctcgtgagtttagctcagttaatatggacaatgcataatatat 51127912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 8253739 - 8253784
Alignment:
Q  176 gtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    ||||| ||||||||| ||  ||||||||||||||||||||||||||    
T  8253739 gtgagcttagctcagttggtatggacaatgcataatatatgcaagg 8253784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 221
Target Start/End: Complemental strand, 17917199 - 17917154
Alignment:
Q  176 gtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    ||||||||||||||| ||| ||||||||||||||| ||||| ||||    
T  17917199 gtgagtttagctcagttgatatggacaatgcataaaatatgtaagg 17917154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 35011393 - 35011438
Alignment:
Q  176 gtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    ||||| ||||||| | ||||| ||||||||||||||||||||||||    
T  35011393 gtgagcttagctcggttgacaaggacaatgcataatatatgcaagg 35011438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 221
Target Start/End: Complemental strand, 47961350 - 47961305
Alignment:
Q  176 gtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    ||||||||||||||| || ||  |||||||||||||||||||||||    
T  47961350 gtgagtttagctcagttggcagagacaatgcataatatatgcaagg 47961305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 49868011 - 49868056
Alignment:
Q  176 gtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    ||||||||| ||||| ||| ||||| ||||||||||||||||||||    
T  49868011 gtgagtttaactcagttgatatggataatgcataatatatgcaagg 49868056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 3510005 - 3509957
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||  ||||||||| ||  ||||||||||||||||||||||||||    
T  3510005 ctcgtgaacttagctcagttggtatggacaatgcataatatatgcaagg 3509957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 4448193 - 4448237
Alignment:
Q  168 atgtgctcgtgagtttagctcagatgacatggacaatgcataata 212  Q
    |||| ||||||||||||||||||||   |||||||||||||||||    
T  4448193 atgtcctcgtgagtttagctcagattgtatggacaatgcataata 4448237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 16826351 - 16826399
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||  ||||||||||||||| ||||||||||    
T  16826351 ctcgtgagcttagctcagttgctatggacaatgcataaaatatgcaagg 16826399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 21400087 - 21400039
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||  | ||||||||||||||||||||||||    
T  21400087 ctcgtgagcttagctcagttggtagggacaatgcataatatatgcaagg 21400039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 25532970 - 25533018
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| |||| |||| ||  ||||||||||||||||||||||||||    
T  25532970 ctcgtgagcttagttcagttggtatggacaatgcataatatatgcaagg 25533018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 29234038 - 29233990
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||||||||||||| ||  || |||||||||||| ||||||||||    
T  29234038 ctcgtgagtttagctcagttggtatagacaatgcataaaatatgcaagg 29233990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 29987172 - 29987128
Alignment:
Q  177 tgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||| || || ||||||||||||||||||||||||    
T  29987172 tgagtttaactcagttggcaaggacaatgcataatatatgcaagg 29987128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 31890813 - 31890769
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgc 217  Q
    |||||||||||||||||| ||  | ||||||||||||||||||||    
T  31890813 ctcgtgagtttagctcagttggtaaggacaatgcataatatatgc 31890769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 41974758 - 41974806
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    ||||||||||||| |||| ||| | ||| ||||||||||||||||||||    
T  41974758 ctcgtgagtttagttcagttgatagggataatgcataatatatgcaagg 41974806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 48681997 - 48681949
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||  ||| ||||||||||||||||||||||    
T  48681997 ctcgtgagcttagctcagttggtatgaacaatgcataatatatgcaagg 48681949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 49183170 - 49183218
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||||||||||||| ||  | ||||||| ||||||||||||||||    
T  49183170 ctcgtgagtttagctcagttggtaaggacaatacataatatatgcaagg 49183218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 52441575 - 52441527
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||  || |||||||||||||||||||||||    
T  52441575 ctcgtgagcttagctcagttggtatagacaatgcataatatatgcaagg 52441527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 39)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 25186305 - 25186258
Alignment:
Q  174 tcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  25186305 tcgtgagtttagctcagttgatatggacaatgcataatatatgcaagg 25186258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 29734691 - 29734736
Alignment:
Q  176 gtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||    
T  29734691 gtgagtttagctcagttgatatggacaatgcataatatatgcaagg 29734736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 33063978 - 33064031
Alignment:
Q  168 atgtgctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||| |||||||| ||||||||| ||| ||||||||||||||||||||||||||    
T  33063978 atgtcctcgtgagcttagctcagttgatatggacaatgcataatatatgcaagg 33064031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 1861873 - 1861825
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||| ||||||||||||||||||||||||||    
T  1861873 ctcgtgagcttagctcagctgatatggacaatgcataatatatgcaagg 1861825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 166 - 221
Target Start/End: Original strand, 16877114 - 16877169
Alignment:
Q  166 aaatgtgctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||| |||||||| ||||||||| ||  ||||||||||||||||||||||||||    
T  16877114 aaatgtcctcgtgagcttagctcagctggtatggacaatgcataatatatgcaagg 16877169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 166 - 221
Target Start/End: Original strand, 16989245 - 16989300
Alignment:
Q  166 aaatgtgctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||| |||||||| ||||||||| ||  ||||||||||||||||||||||||||    
T  16989245 aaatgtcctcgtgagcttagctcagctggtatggacaatgcataatatatgcaagg 16989300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 34464473 - 34464426
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaag 220  Q
    |||||||||||||||||| ||  |||||||||||||||||||||||||    
T  34464473 ctcgtgagtttagctcagttggtatggacaatgcataatatatgcaag 34464426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 39761437 - 39761483
Alignment:
Q  175 cgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||||||||||| ||| | ||||||||||||||||||||||||    
T  39761437 cgtgagtttagctcagttgataaggacaatgcataatatatgcaagg 39761483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 9519783 - 9519730
Alignment:
Q  168 atgtgctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||| |||||||| ||||||||  ||| ||||||||||||||||||||||||||    
T  9519783 atgttctcgtgagcttagctcaattgatatggacaatgcataatatatgcaagg 9519730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 27244649 - 27244702
Alignment:
Q  168 atgtgctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||| |||||||| ||||||||| ||| | ||||||||||||||||||||||||    
T  27244649 atgtcctcgtgagcttagctcagttgatagggacaatgcataatatatgcaagg 27244702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 31543004 - 31543057
Alignment:
Q  168 atgtgctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||| |||||||| ||||||||||||  ||||| ||||||||||||||||||||    
T  31543004 atgtcctcgtgagcttagctcagatggtatggataatgcataatatatgcaagg 31543057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 3197143 - 3197095
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||||||||||||| ||  | ||||||||||||||||||||||||    
T  3197143 ctcgtgagtttagctcagttggtagggacaatgcataatatatgcaagg 3197095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 4122077 - 4122029
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||  ||||||||||||||||||||||||||    
T  4122077 ctcgtgagcttagctcagctggtatggacaatgcataatatatgcaagg 4122029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 6723141 - 6723093
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||||||| ||||| ||| |||||||||| |||||||||||||||    
T  6723141 ctcgtgagtttaactcagttgatatggacaatgtataatatatgcaagg 6723093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 9383273 - 9383225
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||  ||||||||||||||||||||||||||    
T  9383273 ctcgtgagcttagctcagttggtatggacaatgcataatatatgcaagg 9383225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 41526836 - 41526792
Alignment:
Q  177 tgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||    
T  41526836 tgagcttagctcagttgacatggacaatgcatagtatatgcaagg 41526792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 42791292 - 42791340
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||  |||| |||||||||||||||||||||||||    
T  42791292 ctcgtgagcttagctcacttgacttggacaatgcataatatatgcaagg 42791340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 43117254 - 43117206
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||||||||||||| ||  | ||||||||||||||||||||||||    
T  43117254 ctcgtgagtttagctcagttggtaaggacaatgcataatatatgcaagg 43117206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 10195726 - 10195679
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaag 220  Q
    |||||||| ||||||||| ||| ||||| |||||||||||||||||||    
T  10195726 ctcgtgagcttagctcagttgatatggataatgcataatatatgcaag 10195679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 12124544 - 12124590
Alignment:
Q  175 cgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||||||||||| ||  | ||||||||||||||||||||||||    
T  12124544 cgtgagtttagctcagttggtaaggacaatgcataatatatgcaagg 12124590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 176 - 222
Target Start/End: Complemental strand, 37119319 - 37119273
Alignment:
Q  176 gtgagtttagctcagatgacatggacaatgcataatatatgcaaggg 222  Q
    ||||||||| ||||| ||| ||| |||||||||||||||||||||||    
T  37119319 gtgagtttaactcagttgatatgaacaatgcataatatatgcaaggg 37119273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 19976150 - 19976199
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataat-atatgcaagg 221  Q
    |||||||||||||||||| ||  |||||||||||||||| ||||||||||    
T  19976150 ctcgtgagtttagctcagttggtatggacaatgcataataatatgcaagg 19976199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 28771581 - 28771626
Alignment:
Q  175 cgtgagtttagctcagatgacatggacaatgcataatatatgcaag 220  Q
    |||||||||||||||| ||  | |||||||||||||||||||||||    
T  28771581 cgtgagtttagctcagttggtaaggacaatgcataatatatgcaag 28771626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 39068770 - 39068725
Alignment:
Q  175 cgtgagtttagctcagatgacatggacaatgcataatatatgcaag 220  Q
    |||||| ||||||||| ||| | |||||||||||||||||||||||    
T  39068770 cgtgagcttagctcagttgataaggacaatgcataatatatgcaag 39068725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 434745 - 434785
Alignment:
Q  175 cgtgagtttagctcagatgacatggacaatgcataatatat 215  Q
    |||||||||| |||||||| || ||||||||||||||||||    
T  434745 cgtgagtttaactcagatggcaaggacaatgcataatatat 434785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 2256968 - 2257016
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||| ||||| ||  ||||||||||||||||||||||||||    
T  2256968 ctcgtgagcttaactcagttggtatggacaatgcataatatatgcaagg 2257016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 4958648 - 4958696
Alignment:
Q  171 tgctcgtgagtttagctcagatgacatggacaatgcataatatatgcaa 219  Q
    ||||||| |||||||||||| ||| |||||||||| ||||| |||||||    
T  4958648 tgctcgtaagtttagctcagttgatatggacaatgtataatgtatgcaa 4958696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 7350537 - 7350589
Alignment:
Q  167 aatgtgctcgtgagtttagctcagatgacatggacaatgcataatatatgcaa 219  Q
    ||||| ||||| || ||||||||| ||  ||||||||||||||||||||||||    
T  7350537 aatgtactcgtaagcttagctcagttggtatggacaatgcataatatatgcaa 7350589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 10332339 - 10332291
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||| | ||||||||||||||||||| ||||    
T  10332339 ctcgtgagcttagctcagttgataaggacaatgcataatatatggaagg 10332291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 19967415 - 19967463
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||| ||| |||||||||||||| |||||||    
T  19967415 ctcgtgagcttagctcagttgatatgaacaatgcataatatgtgcaagg 19967463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 20455888 - 20455936
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||  ||  ||||||||||||||||||||||||||    
T  20455888 ctcgtgagcttagctcaattggtatggacaatgcataatatatgcaagg 20455936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 20565139 - 20565091
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||  | ||||||||||||||||||||||||    
T  20565139 ctcgtgagcttagctcagttggtagggacaatgcataatatatgcaagg 20565091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 22523076 - 22523028
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||  ||||||||| ||||||||||||||||    
T  22523076 ctcgtgagcttagctcagttggtatggacaatacataatatatgcaagg 22523028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 25598626 - 25598578
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||  ||||||||| ||  ||||||||||||||||||||||||||    
T  25598626 ctcgtgaacttagctcagttggtatggacaatgcataatatatgcaagg 25598578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 27411089 - 27411137
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||| ||||||  ||||||||||||||||||    
T  27411089 ctcgtgagcttagctcagttgatatggaccttgcataatatatgcaagg 27411137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 34977201 - 34977249
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||| ||||| ||  ||||||||||||||||||||||||||    
T  34977201 ctcgtgagcttaactcagttggtatggacaatgcataatatatgcaagg 34977249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 35287728 - 35287680
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    ||||||||||| |||||| ||| | ||||||||||||||| ||||||||    
T  35287728 ctcgtgagtttggctcagttgatagggacaatgcataatagatgcaagg 35287680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 35685121 - 35685077
Alignment:
Q  177 tgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||||||||| ||  | ||||||||||||||||||||||||    
T  35685121 tgagtttagctcagttggtaaggacaatgcataatatatgcaagg 35685077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 44526125 - 44526173
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||  ||||||||||||||||||| ||||||    
T  44526125 ctcgtgagcttagctcagttggtatggacaatgcataatatacgcaagg 44526173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 160 - 221
Target Start/End: Complemental strand, 8717552 - 8717491
Alignment:
Q  160 atatataaatgtgctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    ||||||| || | |||||||||||||||||| ||  ||||||||||||||||||||||||||    
T  8717552 atatatatatatcctcgtgagtttagctcagttggtatggacaatgcataatatatgcaagg 8717491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 27718958 - 27718910
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||| ||||||||||||||||||||||||||    
T  27718958 ctcgtgagcttagctcagttgatatggacaatgcataatatatgcaagg 27718910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 219
Target Start/End: Complemental strand, 37750063 - 37750017
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaa 219  Q
    |||||||||||||||||| ||| ||| ||||||||||||||||||||    
T  37750063 ctcgtgagtttagctcagttgatatgaacaatgcataatatatgcaa 37750017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 6447186 - 6447234
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||||||| ||||| ||  ||||||||||||||||||||||||||    
T  6447186 ctcgtgagtttaactcagttggtatggacaatgcataatatatgcaagg 6447234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 12714434 - 12714386
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||||||||||||| ||  | ||||||||||||||||||||||||    
T  12714434 ctcgtgagtttagctcagttggaagggacaatgcataatatatgcaagg 12714386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 26991817 - 26991773
Alignment:
Q  177 tgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    ||||||| |||||| ||| ||||||||||||||||||||||||||    
T  26991817 tgagtttggctcagttgatatggacaatgcataatatatgcaagg 26991773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 37938492 - 37938538
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaa 219  Q
    |||||||||||||||||| ||  ||||| ||||||||||||||||||    
T  37938492 ctcgtgagtttagctcagttggtatggataatgcataatatatgcaa 37938538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 221
Target Start/End: Complemental strand, 12910867 - 12910822
Alignment:
Q  176 gtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    ||||| ||||||||| ||  ||||||||||||||||||||||||||    
T  12910867 gtgagattagctcagttggtatggacaatgcataatatatgcaagg 12910822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 30427731 - 30427776
Alignment:
Q  176 gtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    ||||| ||||||||| ||  ||||||||||||||||||||||||||    
T  30427731 gtgagcttagctcagttggtatggacaatgcataatatatgcaagg 30427776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 498728 - 498776
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||| ||||| ||  ||||||||||||||||||||||||||    
T  498728 ctcgtgaggttatctcagttggtatggacaatgcataatatatgcaagg 498776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 1877726 - 1877678
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||| ||||| ||| || |||||||||||||||||||||||    
T  1877726 ctcgtgagcttaactcagttgatatagacaatgcataatatatgcaagg 1877678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 6314387 - 6314339
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||| | ||||||||||||| ||||||||||    
T  6314387 ctcgtgagcttagctcagttgataaggacaatgcataaaatatgcaagg 6314339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 7553676 - 7553724
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||||||| ||||| ||  | ||||||||||||||||||||||||    
T  7553676 ctcgtgagtttaactcagttggtagggacaatgcataatatatgcaagg 7553724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 11708983 - 11709031
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||  | ||||||||||||||||||||||||    
T  11708983 ctcgtgagcttagctcagttggtagggacaatgcataatatatgcaagg 11709031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 13286123 - 13286175
Alignment:
Q  168 atgtgctcgtgagtttagctcagatgacatggacaatgcataatatatgcaag 220  Q
    |||| |||||||| ||||||||| ||  || ||||||||||||||||||||||    
T  13286123 atgtcctcgtgagcttagctcagttggtatagacaatgcataatatatgcaag 13286175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 13357505 - 13357457
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||| ||||| ||  ||||||||||||||||||||||||||    
T  13357505 ctcgtgagcttaactcagttggtatggacaatgcataatatatgcaagg 13357457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 14303162 - 14303210
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||||||||||||| ||  |||||||||| ||||||||| |||||    
T  14303162 ctcgtgagtttagctcagttggtatggacaatgtataatatatacaagg 14303210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 17704010 - 17704058
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||  | ||||||||||||||||||||||||    
T  17704010 ctcgtgagcttagctcagttggtaaggacaatgcataatatatgcaagg 17704058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 19163600 - 19163552
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||  |||||||||||||||| |||||||||    
T  19163600 ctcgtgagcttagctcagttggtatggacaatgcataatttatgcaagg 19163552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 22948145 - 22948097
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    ||||||||||| || ||| ||| | ||||||||||||||||||||||||    
T  22948145 ctcgtgagtttggcccagttgatagggacaatgcataatatatgcaagg 22948097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 23852908 - 23852956
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| |||||||||  |  ||||||||||||||||||||||||||    
T  23852908 ctcgtgagcttagctcagtcggtatggacaatgcataatatatgcaagg 23852956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 24696067 - 24696023
Alignment:
Q  176 gtgagtttagctcagatgacatggacaatgcataatatatgcaag 220  Q
    ||||| ||| ||||| ||| |||||||||||||||||||||||||    
T  24696067 gtgagattatctcagttgatatggacaatgcataatatatgcaag 24696023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 29652219 - 29652263
Alignment:
Q  177 tgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||||||||| ||| | | ||||||||||||||||||||||    
T  29652219 tgagtttagctcagttgataagaacaatgcataatatatgcaagg 29652263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 32555251 - 32555299
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    ||||||||||||||| || ||  ||||||||||||||| ||||||||||    
T  32555251 ctcgtgagtttagcttagttggtatggacaatgcataaaatatgcaagg 32555299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 33451413 - 33451365
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||  ||||| ||||||||||||||||||||    
T  33451413 ctcgtgagcttagctcagttggtatggataatgcataatatatgcaagg 33451365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 33482213 - 33482165
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    ||||||||||||||| || ||| | |||||||||||||| |||||||||    
T  33482213 ctcgtgagtttagcttagttgatagggacaatgcataatttatgcaagg 33482165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 39821881 - 39821929
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||  | ||||||||||||||||||||||||    
T  39821881 ctcgtgagcttagctcagttggtagggacaatgcataatatatgcaagg 39821929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 6624768 - 6624821
Alignment:
Q  168 atgtgctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||| |||||||| ||||||||| || |||||||||||||||||||||||||||    
T  6624768 atgtcctcgtgagcttagctcagttggcatggacaatgcataatatatgcaagg 6624821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 32200511 - 32200463
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||||| ||||||||||||||||||||||||    
T  32200511 ctcgtgagcttagctcagttgacagggacaatgcataatatatgcaagg 32200463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 8350667 - 8350713
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaa 219  Q
    |||||||||||| ||||| || |||||||||||||||||||||||||    
T  8350667 ctcgtgagtttaactcagttggcatggacaatgcataatatatgcaa 8350713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 219
Target Start/End: Complemental strand, 39610405 - 39610359
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaa 219  Q
    |||||||| ||||||||| ||| ||||||||||||||||||||||||    
T  39610405 ctcgtgagcttagctcagttgatatggacaatgcataatatatgcaa 39610359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 40445975 - 40446028
Alignment:
Q  168 atgtgctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||| |||||||||||| ||||| ||| | ||||||||||||||||||||||||    
T  40445975 atgtcctcgtgagtttaactcagttgataaggacaatgcataatatatgcaagg 40446028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 37932327 - 37932375
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||  ||||||||||||||||||||||||||    
T  37932327 ctcgtgagcttagctcagttggtatggacaatgcataatatatgcaagg 37932375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 40716013 - 40715965
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||  ||| ||||||||||||||||||||||||||    
T  40716013 ctcgtgagcttagctcaattgatatggacaatgcataatatatgcaagg 40715965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 28757812 - 28757859
Alignment:
Q  174 tcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    ||||||||||||||||| ||||| | |||||| |||||||||||||||    
T  28757812 tcgtgagtttagctcagttgacaggaacaatgtataatatatgcaagg 28757859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 34436848 - 34436899
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagggcc 224  Q
    |||||||| ||||||||| ||  | |||||||||||||||||||||||||||    
T  34436848 ctcgtgagcttagctcagttggtagggacaatgcataatatatgcaagggcc 34436899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 17861976 - 17862022
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaa 219  Q
    |||||||||||||||||| ||  | ||||||||||||||||||||||    
T  17861976 ctcgtgagtttagctcagttggtagggacaatgcataatatatgcaa 17862022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 25604062 - 25604016
Alignment:
Q  175 cgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||| ||||||||| ||| ||||||| ||||||||||||||||||    
T  25604062 cgtgagcttagctcagttgatatggacagtgcataatatatgcaagg 25604016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 16076431 - 16076476
Alignment:
Q  176 gtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    ||||| ||| ||||| ||| ||||||||||||||||||||||||||    
T  16076431 gtgagcttaactcagctgatatggacaatgcataatatatgcaagg 16076476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 18147719 - 18147760
Alignment:
Q  177 tgagtttagctcagatgacatggacaatgcataatatatgca 218  Q
    |||||||||||||| ||| | |||||||||||||||||||||    
T  18147719 tgagtttagctcagttgataaggacaatgcataatatatgca 18147760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 221
Target Start/End: Complemental strand, 18489137 - 18489092
Alignment:
Q  176 gtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    ||||||||||||||| ||  || |||||||||||||||||||||||    
T  18489137 gtgagtttagctcagttggtatagacaatgcataatatatgcaagg 18489092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 22394034 - 22394075
Alignment:
Q  175 cgtgagtttagctcagatgacatggacaatgcataatatatg 216  Q
    |||||| ||||||||| ||| |||||||||||||||||||||    
T  22394034 cgtgagcttagctcagttgatatggacaatgcataatatatg 22394075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 6489004 - 6489052
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||  | ||||||||||||||||||||||||    
T  6489004 ctcgtgagcttagctcagttggtagggacaatgcataatatatgcaagg 6489052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 8545053 - 8545005
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||| ||||| ||| | ||||||||||||||||||||||||    
T  8545053 ctcgtgagcttaactcagttgataaggacaatgcataatatatgcaagg 8545005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 15889408 - 15889456
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||  | ||||||||||||||||||||||||    
T  15889408 ctcgtgagcttagctcagttggtagggacaatgcataatatatgcaagg 15889456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 16036824 - 16036872
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||| ||| ||||||||| || |||||||||| ||||||||||||||||    
T  16036824 ctcgagagcttagctcagttggcatggacaatacataatatatgcaagg 16036872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 16133129 - 16133081
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||  | ||||||||||||||||||||||||    
T  16133129 ctcgtgagcttagctcagttggtaaggacaatgcataatatatgcaagg 16133081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 22522865 - 22522817
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||| | ||  ||||||||||||||||||||||||||    
T  22522865 ctcgtgagcttagctcggttggtatggacaatgcataatatatgcaagg 22522817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 24485696 - 24485744
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| |||||| || ||  ||||||||||||||||||||||||||    
T  24485696 ctcgtgagcttagcttagttggtatggacaatgcataatatatgcaagg 24485744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 26590704 - 26590752
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    ||||||||||||||| || |  || ||||||||||||||||||||||||    
T  26590704 ctcgtgagtttagcttagttagcaaggacaatgcataatatatgcaagg 26590752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 27903110 - 27903158
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    ||||||||||||| |||| ||  ||| ||||||||||||||||||||||    
T  27903110 ctcgtgagtttagttcagttggtatgaacaatgcataatatatgcaagg 27903158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 28207129 - 28207177
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||  ||||||||||||||| ||||||||||    
T  28207129 ctcgtgagcttagctcagttggtatggacaatgcataaaatatgcaagg 28207177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 36321558 - 36321510
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||  | ||||||||||||||||||||||||    
T  36321558 ctcgtgagcttagctcagttggtaaggacaatgcataatatatgcaagg 36321510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 42505869 - 42505917
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    ||||| || ||||||||| ||  ||||||||||||||||||||||||||    
T  42505869 ctcgtaagcttagctcagttggtatggacaatgcataatatatgcaagg 42505917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 39991 - 40043
Alignment:
Q  169 tgtgctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||||||| ||||||||| ||  ||||||||||||||||||||||||||    
T  39991 tgtgctcgtgagcttagctcagttggtatggacaatgcataatatatgcaagg 40043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 44558838 - 44558790
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||||||||||||| ||  ||||||||||||||||||||||||||    
T  44558838 ctcgtgagtttagctcagttggtatggacaatgcataatatatgcaagg 44558790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 219
Target Start/End: Complemental strand, 35142213 - 35142167
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaa 219  Q
    |||||||| ||||||||| ||| ||||||||||||||||||||||||    
T  35142213 ctcgtgagcttagctcagttgatatggacaatgcataatatatgcaa 35142167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 30857240 - 30857293
Alignment:
Q  168 atgtgctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||| ||||||||||||||| || ||  ||||||||||||||||||||||||||    
T  30857240 atgtcctcgtgagtttagcttagttggtatggacaatgcataatatatgcaagg 30857293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 3672613 - 3672569
Alignment:
Q  176 gtgagtttagctcagatgacatggacaatgcataatatatgcaag 220  Q
    ||||||||||||||| ||| ||||||||| |||||||||||||||    
T  3672613 gtgagtttagctcagttgatatggacaatacataatatatgcaag 3672569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 10244724 - 10244772
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||  ||||||||||||||||||||||||||    
T  10244724 ctcgtgagcttagctcagttggtatggacaatgcataatatatgcaagg 10244772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 27772032 - 27772080
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| |||| ||||||||||| |||||||||||||||| ||||||    
T  27772032 ctcgtgagcttagttcagatgacatagacaatgcataatataagcaagg 27772080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 40762271 - 40762223
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||||||  | ||||||||||||||||||||||||    
T  40762271 ctcgtgagcttagctcagatggtaaggacaatgcataatatatgcaagg 40762223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 48069901 - 48069853
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||||||| ||||||||||||||||| ||||    
T  48069901 ctcgtgagcttagctcagttgacatgaacaatgcataatatatgtaagg 48069853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 25246768 - 25246815
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaag 220  Q
    |||||||||||||||||| ||| |  ||||||||||||||||||||||    
T  25246768 ctcgtgagtttagctcagttgataaagacaatgcataatatatgcaag 25246815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 39801703 - 39801750
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaag 220  Q
    |||||||| ||||||||| ||  |||||||||||||||||||||||||    
T  39801703 ctcgtgagcttagctcagttggtatggacaatgcataatatatgcaag 39801750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 221
Target Start/End: Original strand, 42336060 - 42336115
Alignment:
Q  166 aaatgtgctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||| ||||||| |||||||||| ||| | ||||||||||||||| ||||||||    
T  42336060 aaatgtcctcgtgaatttagctcagttgataaggacaatgcataatacatgcaagg 42336115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 177 - 219
Target Start/End: Original strand, 45200194 - 45200236
Alignment:
Q  177 tgagtttagctcagatgacatggacaatgcataatatatgcaa 219  Q
    |||||||||||||| ||| ||||||||||||||||| ||||||    
T  45200194 tgagtttagctcagttgatatggacaatgcataatacatgcaa 45200236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 8227348 - 8227389
Alignment:
Q  175 cgtgagtttagctcagatgacatggacaatgcataatatatg 216  Q
    |||||||||||||||| ||| | |||||||||||||||||||    
T  8227348 cgtgagtttagctcagttgataaggacaatgcataatatatg 8227389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 19599145 - 19599190
Alignment:
Q  176 gtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    ||||||||| ||||| ||  ||||||||||||||||||||||||||    
T  19599145 gtgagtttaactcagttggtatggacaatgcataatatatgcaagg 19599190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 20205813 - 20205862
Alignment:
Q  167 aatgtgctcgtgagtttagctcagatgacatggacaatgcataatatatg 216  Q
    ||||| ||||| |||||||||||| ||  |||||||||||||||||||||    
T  20205813 aatgtcctcgtaagtttagctcagttggtatggacaatgcataatatatg 20205862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 219
Target Start/End: Complemental strand, 39926601 - 39926556
Alignment:
Q  174 tcgtgagtttagctcagatgacatggacaatgcataatatatgcaa 219  Q
    ||||||| ||||||||| ||| | ||||||||||||||||||||||    
T  39926601 tcgtgagcttagctcagttgataaggacaatgcataatatatgcaa 39926556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 1051834 - 1051786
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| | |||||||||||||| |||||||| ||||    
T  1051834 ctcgtgagcttagctcagttaacatggacaatgcacaatatatgtaagg 1051786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 1399159 - 1399207
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||||||| ||||| ||  ||||||||||||| ||||||||||||    
T  1399159 ctcgtgagtttaactcagttggtatggacaatgcatgatatatgcaagg 1399207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 3953438 - 3953486
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| |||||||||  |  ||||||||||||||||||||||||||    
T  3953438 ctcgtgagcttagctcagtcggtatggacaatgcataatatatgcaagg 3953486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 5458135 - 5458087
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||| | | ||||||||||||||||||||||    
T  5458135 ctcgtgagcttagctcagttgataagaacaatgcataatatatgcaagg 5458087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 8683062 - 8683114
Alignment:
Q  168 atgtgctcgtgagtttagctcagatgacatggacaatgcataatatatgcaag 220  Q
    |||| |||||||| ||||||||| ||  || ||||||||||||||||||||||    
T  8683062 atgtcctcgtgagcttagctcagttggtatagacaatgcataatatatgcaag 8683114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 19416511 - 19416559
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||  ||||||||||||||| ||||||||||    
T  19416511 ctcgtgagcttagctcagttggtatggacaatgcataaaatatgcaagg 19416559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 27462500 - 27462452
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    ||||||||  |||||||| ||  ||||||||||||||||||||||||||    
T  27462500 ctcgtgagcatagctcagttggtatggacaatgcataatatatgcaagg 27462452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 29726797 - 29726845
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||| ||||| ||||||| |||||| |||||||||||||||    
T  29726797 ctcgtgagcttaactcagttgacatgaacaatgtataatatatgcaagg 29726845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 35222921 - 35222969
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    ||||||||||||| |||| ||| | ||||||||||| ||||||||||||    
T  35222921 ctcgtgagtttaggtcagttgatagggacaatgcatgatatatgcaagg 35222969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 40201018 - 40200974
Alignment:
Q  174 tcgtgagtttagctcagatgacatggacaatgcataatatatgca 218  Q
    ||||||||||||||||  ||| ||||||||| |||||||||||||    
T  40201018 tcgtgagtttagctcaattgatatggacaatacataatatatgca 40200974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 41527557 - 41527605
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| |||||| || ||  ||||||||||||||||||||||||||    
T  41527557 ctcgtgagcttagcttagttggtatggacaatgcataatatatgcaagg 41527605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 49063822 - 49063774
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||||||  | ||||||||||||||| ||||||||    
T  49063822 ctcgtgagcttagctcagatggtacggacaatgcataataaatgcaagg 49063774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 221
Target Start/End: Original strand, 32053779 - 32053833
Alignment:
Q  167 aatgtgctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    ||||| |||||||| ||||||||| ||  ||||||||||||||||||||||||||    
T  32053779 aatgtcctcgtgagcttagctcagttggtatggacaatgcataatatatgcaagg 32053833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 10780176 - 10780123
Alignment:
Q  168 atgtgctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    ||||||||||||| ||||||||| ||  | ||||||||||||||||||||||||    
T  10780176 atgtgctcgtgagcttagctcagttggtagggacaatgcataatatatgcaagg 10780123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 21373475 - 21373422
Alignment:
Q  168 atgtgctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    ||||||||||||||||||||||  ||  ||||||||||||||| ||||||||||    
T  21373475 atgtgctcgtgagtttagctcaattggtatggacaatgcataaaatatgcaagg 21373422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 221
Target Start/End: Complemental strand, 24623378 - 24623333
Alignment:
Q  176 gtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    ||||||||||||||| ||| ||||||||||||||||||||| ||||    
T  24623378 gtgagtttagctcagttgatatggacaatgcataatatatgtaagg 24623333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 18256880 - 18256928
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||| | ||||||||||||||||||||||||    
T  18256880 ctcgtgagcttagctcagttgataaggacaatgcataatatatgcaagg 18256928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 20744135 - 20744183
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||  ||||||||||||||||||||||||||    
T  20744135 ctcgtgagcttagctcagttggtatggacaatgcataatatatgcaagg 20744183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 216
Target Start/End: Original strand, 10902337 - 10902380
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatg 216  Q
    |||| ||| ||||||||||||| |||||||||||||||||||||    
T  10902337 ctcgcgagcttagctcagatgatatggacaatgcataatatatg 10902380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 174 - 220
Target Start/End: Complemental strand, 3373444 - 3373398
Alignment:
Q  174 tcgtgagtttagctcagatgacatggacaatgcataatatatgcaag 220  Q
    |||||| |||| ||||| ||| |||||||||||||||||||||||||    
T  3373444 tcgtgaatttaactcagttgatatggacaatgcataatatatgcaag 3373398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 1918522 - 1918474
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||||||| ||||| ||  || |||||||||||||||||||||||    
T  1918522 ctcgtgagtttaactcagttggtatagacaatgcataatatatgcaagg 1918474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 2692215 - 2692259
Alignment:
Q  176 gtgagtttagctcagatgacatggacaatgcataatatatgcaag 220  Q
    ||||| ||| ||||| ||| |||||||||||||||||||||||||    
T  2692215 gtgagattatctcagttgatatggacaatgcataatatatgcaag 2692259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 11982548 - 11982596
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| |||||||| |||  ||||||||| ||||||||||||||||    
T  11982548 ctcgtgagcttagctcaaatggtatggacaatacataatatatgcaagg 11982596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 12204366 - 12204414
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    ||||||||  |||||||| ||| ||||||||||||||||||||| ||||    
T  12204366 ctcgtgagcatagctcagttgatatggacaatgcataatatatgtaagg 12204414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 13496113 - 13496161
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||| ||||| ||| ||| ||||||||||||||||||||||    
T  13496113 ctcgtgagcttaactcagttgatatgaacaatgcataatatatgcaagg 13496161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 17382081 - 17382129
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||  |||||||||| |||||||||||||||    
T  17382081 ctcgtgagcttagctcagttggtatggacaatgtataatatatgcaagg 17382129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 32193923 - 32193875
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||||||||||||| ||  | | ||||||||||||||||||||||    
T  32193923 ctcgtgagtttagctcagttggtaagaacaatgcataatatatgcaagg 32193875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 33938743 - 33938695
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||  ||| ||||||||||||||||||||||    
T  33938743 ctcgtgagcttagctcagttggtatgaacaatgcataatatatgcaagg 33938695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 17729 - 17777
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||||||||||||| ||  ||||||||||||||||| ||||||||    
T  17729 ctcgtgagtttagctcagttggtatggacaatgcataatacatgcaagg 17777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 7827505 - 7827553
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||||||| ||||| ||| ||||||||||||||||||||| ||||    
T  7827505 ctcgtgagtttaactcagttgatatggacaatgcataatatatgtaagg 7827553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 7829893 - 7829941
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||||||| ||||| ||| ||||||||||||||||||||| ||||    
T  7829893 ctcgtgagtttaactcagttgatatggacaatgcataatatatgtaagg 7829941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 10498759 - 10498711
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||  ||||||||||||||||||||||||||    
T  10498759 ctcgtgagcttagctcagttggtatggacaatgcataatatatgcaagg 10498711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 20370345 - 20370297
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||| ||||||||||||||| ||||||||||    
T  20370345 ctcgtgagcttagctcagttgatatggacaatgcataaaatatgcaagg 20370297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 21331481 - 21331433
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||  ||||||||||||||||||||||||||    
T  21331481 ctcgtgagcttagctcagttgttatggacaatgcataatatatgcaagg 21331433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 51505874 - 51505918
Alignment:
Q  177 tgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||||||||| ||| ||||||||||||||| ||||||||||    
T  51505874 tgagtttagctcagttgatatggacaatgcataaaatatgcaagg 51505918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 39779018 - 39779069
Alignment:
Q  170 gtgctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||||||| |||||| | ||  ||||||||||||||||||||||||||    
T  39779018 gtgctcgtgagtatagctcggttggtatggacaatgcataatatatgcaagg 39779069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 221
Target Start/End: Complemental strand, 43345082 - 43345023
Alignment:
Q  162 atataaatgtgctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||| ||||| |||||||||||||||||| ||  ||| ||||| ||||||||||||||||    
T  43345082 atatgaatgtcctcgtgagtttagctcagttggtatgaacaatacataatatatgcaagg 43345023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 12976664 - 12976618
Alignment:
Q  175 cgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||||| ||||| ||| | ||||||||||||||||||||||||    
T  12976664 cgtgagtttaactcagttgatagggacaatgcataatatatgcaagg 12976618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 173 - 219
Target Start/End: Complemental strand, 37921062 - 37921016
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaa 219  Q
    |||||||||||||||||| ||| | ||| ||||||||||||||||||    
T  37921062 ctcgtgagtttagctcagttgatagggataatgcataatatatgcaa 37921016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 43490483 - 43490433
Alignment:
Q  171 tgctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||||| ||||||||| ||  ||| ||||||||||||||||||||||    
T  43490483 tgctcgtgagcttagctcagttggtatgaacaatgcataatatatgcaagg 43490433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 173 - 219
Target Start/End: Complemental strand, 51402777 - 51402731
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaa 219  Q
    ||||| |||||||||||| ||| ||||||||||||||||| ||||||    
T  51402777 ctcgtaagtttagctcagttgatatggacaatgcataatacatgcaa 51402731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 16980423 - 16980370
Alignment:
Q  168 atgtgctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||| |||||||| ||||||||| ||  | ||||||||||||||||||||||||    
T  16980423 atgtcctcgtgagcttagctcagttggtaaggacaatgcataatatatgcaagg 16980370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 21506827 - 21506774
Alignment:
Q  168 atgtgctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||| |||||||| ||||||||| ||  ||||||||||||||| ||||||||||    
T  21506827 atgtcctcgtgagcttagctcagttggtatggacaatgcataaaatatgcaagg 21506774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 53996299 - 53996344
Alignment:
Q  176 gtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    ||||| ||||||||| ||  ||||||||||||||||||||||||||    
T  53996299 gtgagcttagctcagttggtatggacaatgcataatatatgcaagg 53996344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 1149133 - 1149085
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||  | ||||||||||||||||||||||||    
T  1149133 ctcgtgagcttagctcagttggtaaggacaatgcataatatatgcaagg 1149085  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 3755336 - 3755384
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||||||||||| | ||  | ||||||||||||||||||||||||    
T  3755336 ctcgtgagtttagctcggttggtagggacaatgcataatatatgcaagg 3755384  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 4216463 - 4216415
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||  ||||||||| ||| | ||||||||||||||||||||||||    
T  4216463 ctcgtgaacttagctcagttgataaggacaatgcataatatatgcaagg 4216415  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 7824804 - 7824852
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||||||| ||||| ||| || |||||| ||||||||||||||||    
T  7824804 ctcgtgagtttaactcagttgatatagacaatacataatatatgcaagg 7824852  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 17507763 - 17507715
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||  ||||||||| ||| || |||||||||||||||||||||||    
T  17507763 ctcgtgaaattagctcagttgatattgacaatgcataatatatgcaagg 17507715  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 18870789 - 18870741
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||  | ||||||||||||||||||||||||    
T  18870789 ctcgtgagcttagctcagttggtagggacaatgcataatatatgcaagg 18870741  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 20537879 - 20537927
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||| ||| ||||||||| ||| ||||||||||||||||||||| ||||    
T  20537879 ctcgcgagcttagctcagttgatatggacaatgcataatatatggaagg 20537927  T

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Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 20612341 - 20612293
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||  |||| || ||||||||||||||||||||||    
T  20612341 ctcgtgagcttagctcatttgacttgaacaatgcataatatatgcaagg 20612293  T

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Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 25340988 - 25340940
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||  ||||||||||||||| ||||||||||    
T  25340988 ctcgtgagcttagctcagttggtatggacaatgcataaaatatgcaagg 25340940  T

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Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 29631187 - 29631231
Alignment:
Q  177 tgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||| ||||||||| ||  ||||||||||||||||||||||||||    
T  29631187 tgagcttagctcagttggtatggacaatgcataatatatgcaagg 29631231  T

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Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 44579633 - 44579681
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||  ||||||||||||||| ||||||||||    
T  44579633 ctcgtgagcttagctcagttggtatggacaatgcataaaatatgcaagg 44579681  T

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Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 47039426 - 47039470
Alignment:
Q  175 cgtgagtttagctcagatgacatggacaatgcataatatatgcaa 219  Q
    |||||| ||| ||||||||| | ||||||||||||||||||||||    
T  47039426 cgtgagcttaactcagatgataaggacaatgcataatatatgcaa 47039470  T

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Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 53162195 - 53162243
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||  ||| ||||||||||||||| ||||||||||    
T  53162195 ctcgtgagcttagctcaattgatatggacaatgcataaaatatgcaagg 53162243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 54230159 - 54230115
Alignment:
Q  177 tgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||||||||| ||  | ||||||||||||||||||||||||    
T  54230159 tgagtttagctcagttggtaaggacaatgcataatatatgcaagg 54230115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 31214 - 31172
Alignment:
Q  178 gagtttagctcagatgacatggacaatgcataatatatgcaag 220  Q
    ||||||||||||| ||  |||||||||||||||||||||||||    
T  31214 gagtttagctcagttggtatggacaatgcataatatatgcaag 31172  T

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Target: scaffold0122; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 14250 - 14202
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||||||| ||||| ||  ||| ||||||||||||||||||||||    
T  14250 ctcgtgagtttaactcagttggtatgaacaatgcataatatatgcaagg 14202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 239804 - 239850
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaa 219  Q
    |||||||||||||||||| ||  | ||||||||||||||||||||||    
T  239804 ctcgtgagtttagctcagttggtaaggacaatgcataatatatgcaa 239850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0334 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 5182 - 5227
Alignment:
Q  176 gtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    ||||||||||||||  ||  ||||||||||||||||||||||||||    
T  5182 gtgagtttagctcaattggtatggacaatgcataatatatgcaagg 5227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 28177 - 28129
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||||||||||||| ||  |||||||||||||||  |||||||||    
T  28177 ctcgtgagtttagctcagttggtatggacaatgcataacgtatgcaagg 28129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0143 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0143
Description:

Target: scaffold0143; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 4463 - 4511
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    ||||||||||||||| || ||| | |||||||||||||| |||||||||    
T  4463 ctcgtgagtttagcttagttgatagggacaatgcataatttatgcaagg 4511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 56781 - 56829
Alignment:
Q  173 ctcgtgagtttagctcagatgacatggacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||  |||||||||| |||||||||||||||    
T  56781 ctcgtgagcttagctcagttggtatggacaatgtataatatatgcaagg 56829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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