View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0134-Insertion-6 (Length: 455)

Name: NF0134-Insertion-6
Description: NF0134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0134-Insertion-6
NF0134-Insertion-6
[»] chr2 (8 HSPs)
chr2 (8-454)||(35994072-35994520)
chr2 (55-145)||(9394539-9394629)
chr2 (30-96)||(44001113-44001179)
chr2 (9-142)||(987391-987523)
chr2 (54-111)||(38833772-38833829)
chr2 (20-116)||(13789878-13789974)
chr2 (39-126)||(14232982-14233069)
chr2 (62-99)||(23058349-23058386)
[»] chr1 (10 HSPs)
chr1 (9-108)||(4949008-4949107)
chr1 (24-138)||(6556590-6556704)
chr1 (9-127)||(40304416-40304534)
chr1 (9-107)||(24446802-24446900)
chr1 (55-99)||(3332565-3332609)
chr1 (67-106)||(3301837-3301876)
chr1 (57-104)||(33765076-33765123)
chr1 (73-110)||(48466045-48466082)
chr1 (341-385)||(206153-206197)
chr1 (341-397)||(6687157-6687213)
[»] chr3 (3 HSPs)
chr3 (55-140)||(28596598-28596683)
chr3 (22-99)||(38930880-38930957)
chr3 (339-399)||(47290862-47290922)
[»] chr4 (5 HSPs)
chr4 (9-137)||(181683-181811)
chr4 (9-107)||(52774827-52774925)
chr4 (42-110)||(16494497-16494565)
chr4 (54-108)||(17480205-17480259)
chr4 (45-95)||(1074172-1074222)
[»] chr5 (3 HSPs)
chr5 (9-118)||(25025752-25025861)
chr5 (9-97)||(36277227-36277315)
chr5 (65-146)||(1559446-1559528)
[»] chr8 (5 HSPs)
chr8 (39-108)||(32659796-32659865)
chr8 (22-99)||(4674748-4674824)
chr8 (54-107)||(4851361-4851414)
chr8 (155-207)||(28485221-28485273)
chr8 (74-106)||(39301389-39301421)
[»] chr6 (7 HSPs)
chr6 (22-107)||(23140025-23140110)
chr6 (22-99)||(1315046-1315123)
chr6 (56-108)||(1764131-1764183)
chr6 (73-208)||(8109285-8109417)
chr6 (33-104)||(25416899-25416970)
chr6 (10-88)||(32609120-32609198)
chr6 (39-108)||(1896192-1896261)
[»] scaffold0013 (1 HSPs)
scaffold0013 (55-100)||(60070-60115)


Alignment Details
Target: chr2 (Bit Score: 412; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 8 - 454
Target Start/End: Original strand, 35994072 - 35994520
Alignment:
Q  8 gtttaaccactcattatcaattaggtccctgtattttaacaacgtcctatcaatttggtctctatttttaaccacttactatcaatttagtctctaacat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35994072 gtttaaccactcattatcaattaggtccctgtattttaacaacgtcctatcaatttggtctctatttttaaccacttactatcaatttagtctctaacat 35994171  T
Q  108 actttcaaaatgacaaatatgagcaaaatttgacagagttgaggcattttttgaagtattcgtaatctcagcgacctacttgagagcaccctgcaaagtc 207  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  35994172 actttcaaaatgacaaatatgagcaaaatttgacagagtcgaggcatttt-tgaagtattcgtaatctcagcgacctacttgagagcaccctgcaaagtc 35994270  T
Q  208 aagcacatttattatttgagagcgccctacattgataaagtattgtgttttggtcaagtaatctagtgactatagtcacatattgggattcagtgacttt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35994271 aagcacatttattatttgagagcgccctacattgataaagtattgtgttttggtcaagtaatctagtgactatagtcacatattgggattcagtgacttt 35994370  T
Q  308 aaggcagtaaagtcacga---acttcgtgtctatctctctctcatcttatttattgtttctctttcataaaagacacaaaattacactaaagtcagtccg 404  Q
    ||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35994371 aaggcagtaaagtcacgaactacttcgtgtctatctctctctcatcttatttattgtttctctttcataaaagacacaaaattacactaaagtcagtccg 35994470  T
Q  405 tgttcgatttcagtctactaagacccatcgatgttaacgtccttgcagct 454  Q
    |||||||| |||||||||| |||||||| |||||||||||||||||||||    
T  35994471 tgttcgatatcagtctactcagacccatagatgttaacgtccttgcagct 35994520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 55 - 145
Target Start/End: Complemental strand, 9394629 - 9394539
Alignment:
Q  55 tatcaatttggtctctatttttaaccacttactatcaatttagtctctaacatactttcaaaatgacaaatatgagcaaaatttgacagag 145  Q
    ||||||||||| |  ||| ||||||||||||||||||||||||||||||| |||| |||| |||||| |||||||  ||||||||||||||    
T  9394629 tatcaatttgggccatatatttaaccacttactatcaatttagtctctaatatacgttcagaatgaccaatatgaataaaatttgacagag 9394539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 44001179 - 44001113
Alignment:
Q  30 aggtccctgtattttaacaacgtcctatcaatttggtctctatttttaaccacttactatcaattta 96  Q
    |||||| |||||||||||||| | ||||||||||||||| ||| |||||||||||||||||||||||    
T  44001179 aggtccttgtattttaacaacttactatcaatttggtctatatctttaaccacttactatcaattta 44001113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 9 - 142
Target Start/End: Complemental strand, 987523 - 987391
Alignment:
Q  9 tttaaccactcattatcaattaggtccctgtattttaacaacgtcctatcaatttggtctctatttttaaccacttactatcaatttagtctctaacata 108  Q
    |||||||||| | |||||||||||||||| |||||||||||| |  | ||||||||||| |||| ||||||||||||  || |||||||||  ||||||     
T  987523 tttaaccacttactatcaattaggtccctatattttaacaacttagt-tcaatttggtccctatctttaaccacttatcattaatttagtccttaacatg 987425  T
Q  109 ctttcaaaatgacaaatatgagcaaaatttgaca 142  Q
     ||||| || ||| ||||||||  ||||||||||    
T  987424 ttttcagaaggactaatatgagtgaaatttgaca 987391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 38833829 - 38833772
Alignment:
Q  54 ctatcaatttggtctctatttttaaccacttactatcaatttagtctctaacatactt 111  Q
    ||||||||||| ||| ||| |||||||||||| ||||||||||||| |||||| ||||    
T  38833829 ctatcaatttgatctttatgtttaaccacttattatcaatttagtccctaacacactt 38833772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 13789974 - 13789878
Alignment:
Q  20 attatcaattaggtccctgtattttaacaacgtcctatcaatttggtctctatttttaaccacttactatcaatttagtctctaacatactttcaaa 116  Q
    |||||||| || ||| || |||||||||||| | ||||||||||| |||| || |||||  |||||  ||||||||| ||||||||||  |||||||    
T  13789974 attatcaagtatgtctctatattttaacaacttactatcaatttgatctcaatctttaataacttagaatcaatttaatctctaacatgttttcaaa 13789878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 126
Target Start/End: Complemental strand, 14233069 - 14232982
Alignment:
Q  39 tattttaacaacgtcctatcaatttggtctctatttttaaccacttactatcaatttagtctctaacatactttcaaaatgacaaata 126  Q
    |||||||||||| | || |||||||||||| ||| ||||||| || | |||||||| |||| |||||||  ||||| |||||| ||||    
T  14233069 tattttaacaacttactgtcaatttggtctatatctttaacccctaattatcaattcagtccctaacatgttttcagaatgactaata 14232982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 99
Target Start/End: Original strand, 23058349 - 23058386
Alignment:
Q  62 ttggtctctatttttaaccacttactatcaatttagtc 99  Q
    |||||| |||| ||||||||||||||||||||||||||    
T  23058349 ttggtccctatatttaaccacttactatcaatttagtc 23058386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 9 - 108
Target Start/End: Original strand, 4949008 - 4949107
Alignment:
Q  9 tttaaccactcattatcaattaggtccctgtattttaacaacgtcctatcaatttggtctctatttttaaccacttactatcaatttagtctctaacata 108  Q
    ||||| |||| | |||||||||||||||| |||||||||||  | |||| ||||| |||||||| |||||||||||||| ||||||||||||||||||||    
T  4949008 tttaatcacttactatcaattaggtccctatattttaacaatttactattaatttcgtctctatatttaaccacttactctcaatttagtctctaacata 4949107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 24 - 138
Target Start/End: Original strand, 6556590 - 6556704
Alignment:
Q  24 tcaattaggtccctgtattttaacaacgtcctatcaatttggtctctatttttaaccacttactatcaatttagtctctaacatactttcaaaatgacaa 123  Q
    ||||| || |||||||||||||||||| | ||||||| ||||| | ||| ||||||| |||||||||||||||||||||| |||||| ||  |||||| |    
T  6556590 tcaatcagatccctgtattttaacaacttactatcaacttggtttttatatttaaccgcttactatcaatttagtctctagcatactctcggaatgacta 6556689  T
Q  124 atatgagcaaaattt 138  Q
    ||||||| |||||||    
T  6556690 atatgagtaaaattt 6556704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 40304416 - 40304534
Alignment:
Q  9 tttaaccactcattatcaattaggtccctgtattttaacaacgtcctatcaatttggtctctatttttaaccacttactatcaatttagtctctaacata 108  Q
    |||||||||| | |||||||||| ||||| |||||||| ||| |  ||||||||  |||  |||  ||||||||||||||| ||||||||| ||||||||    
T  40304416 tttaaccactaactatcaattagatccctatattttaataacttattatcaattcagtccttataattaaccacttactattaatttagtcactaacata 40304515  T
Q  109 ctttcaaaatgacaaatat 127  Q
    || ||| |||||| |||||    
T  40304516 ctctcagaatgactaatat 40304534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 24446900 - 24446802
Alignment:
Q  9 tttaaccactcattatcaattaggtccctgtattttaacaacgtcctatcaatttggtctctatttttaaccacttactatcaatttagtctctaacat 107  Q
    |||||||||||| ||||||||| ||| |||||||||||  || | |||||||||||||   | | |||||||||  |||| ||||||||||||||||||    
T  24446900 tttaaccactcactatcaattatgtctctgtattttaatcacttactatcaatttggttcttgtatttaaccaccaactagcaatttagtctctaacat 24446802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 3332609 - 3332565
Alignment:
Q  55 tatcaatttggtctctatttttaaccacttactatcaatttagtc 99  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||    
T  3332609 tatcaatttggtctgtatatttaaccacttactatcaatttagtc 3332565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 106
Target Start/End: Original strand, 3301837 - 3301876
Alignment:
Q  67 ctctatttttaaccacttactatcaatttagtctctaaca 106  Q
    |||||| |||||||||||||||||||||||||| ||||||    
T  3301837 ctctatgtttaaccacttactatcaatttagtccctaaca 3301876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 104
Target Start/End: Original strand, 33765076 - 33765123
Alignment:
Q  57 tcaatttggtctctatttttaaccacttactatcaatttagtctctaa 104  Q
    |||||| | ||||||| |||||||||||||||||||||||||| ||||    
T  33765076 tcaattagatctctatctttaaccacttactatcaatttagtcactaa 33765123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 110
Target Start/End: Original strand, 48466045 - 48466082
Alignment:
Q  73 ttttaaccacttactatcaatttagtctctaacatact 110  Q
    ||||||| ||||||||||||||||||| ||||||||||    
T  48466045 ttttaacaacttactatcaatttagtccctaacatact 48466082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 385
Target Start/End: Complemental strand, 206197 - 206153
Alignment:
Q  341 ctctctcatcttatttattgtttctctttcataaaagacacaaaa 385  Q
    ||||||||||||||||||  |||||||||||||||| ||| ||||    
T  206197 ctctctcatcttatttatcttttctctttcataaaatacataaaa 206153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 397
Target Start/End: Original strand, 6687157 - 6687213
Alignment:
Q  341 ctctctcatcttatttattgtttctctttcataaaagacacaaaattacactaaagt 397  Q
    |||||| |||||||||||| ||| ||| |||||||| || |||||||||| ||||||    
T  6687157 ctctctaatcttatttattatttttctctcataaaacacgcaaaattacattaaagt 6687213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 55 - 140
Target Start/End: Complemental strand, 28596683 - 28596598
Alignment:
Q  55 tatcaatttggtctctatttttaaccacttactatcaatttagtctctaacatactttcaaaatgacaaatatgagcaaaatttga 140  Q
    ||||||||| ||| |||| |||||||| |||||||||||||||||||||||||||| | | || ||| |||||||| |||||||||    
T  28596683 tatcaatttagtccctatatttaaccaattactatcaatttagtctctaacatactctaagaaggactaatatgagtaaaatttga 28596598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 38930880 - 38930957
Alignment:
Q  22 tatcaattaggtccctgtattttaacaacgtcctatcaatttggtctctatttttaaccacttactatcaatttagtc 99  Q
    |||||||||||||| | ||||||||| || | ||||||||||| ||| ||| |||||||||||| ||| |||||||||    
T  38930880 tatcaattaggtccttatattttaaccacttactatcaatttgatctttatatttaaccacttattatgaatttagtc 38930957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 399
Target Start/End: Complemental strand, 47290922 - 47290862
Alignment:
Q  339 ctctctctcatcttatttattgtttctctttcataaaagacacaaaattacactaaagtca 399  Q
    ||||||||||| |||| |||  |||||||||||| ||| |||| ||| |||||||||||||    
T  47290922 ctctctctcatattatctatcatttctctttcatgaaatacaccaaaatacactaaagtca 47290862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 137
Target Start/End: Complemental strand, 181811 - 181683
Alignment:
Q  9 tttaaccactcattatcaattaggtccctgtattttaacaacgtcctatcaatttggtctctatttttaaccacttactatcaatttagtctctaacata 108  Q
    ||||||| |||| |||||| ||| ||||| |||||||||||| | ||||||||||| |  |||| ||||| ||||| |||||||||||| | |||| ||     
T  181811 tttaacccctcactatcaagtagatccctatattttaacaacttactatcaatttgattcctatatttaatcactttctatcaatttaggccctaatatg 181712  T
Q  109 ctttcaaaatgacaaatatgagcaaaatt 137  Q
     |||||||| ||| |||||||| ||||||    
T  181711 ttttcaaaaggactaatatgagtaaaatt 181683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 52774925 - 52774827
Alignment:
Q  9 tttaaccactcattatcaattaggtccctgtattttaacaacgtcctatcaatttggtctctatttttaaccacttactatcaatttagtctctaacat 107  Q
    |||||| ||||| |||||||||| ||| | ||||||||| || | |||||||||||||| |||| | |||||| || |||||||||| |||||||||||    
T  52774925 tttaactactcactatcaattagatccttatattttaaccacttactatcaatttggtccctatatataaccattttctatcaatttggtctctaacat 52774827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 42 - 110
Target Start/End: Original strand, 16494497 - 16494565
Alignment:
Q  42 tttaacaacgtcctatcaatttggtctctatttttaaccacttactatcaatttagtctctaacatact 110  Q
    ||||||||| | |||||||||| ||| || | ||||||| |||||||||||||||||||||||||||||    
T  16494497 tttaacaacttactatcaattttgtcgctgtatttaaccgcttactatcaatttagtctctaacatact 16494565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 108
Target Start/End: Original strand, 17480205 - 17480259
Alignment:
Q  54 ctatcaatttggtctctatttttaaccacttactatcaatttagtctctaacata 108  Q
    ||||||||| ||| | ||| |||||||||||||||||| ||||||||||||||||    
T  17480205 ctatcaattcggtatttatatttaaccacttactatcagtttagtctctaacata 17480259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 95
Target Start/End: Complemental strand, 1074222 - 1074172
Alignment:
Q  45 aacaacgtcctatcaatttggtctctatttttaaccacttactatcaattt 95  Q
    |||||| ||||||||||||||||  ||| |||| |||||||||||||||||    
T  1074222 aacaacttcctatcaatttggtccttatatttagccacttactatcaattt 1074172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 118
Target Start/End: Complemental strand, 25025861 - 25025752
Alignment:
Q  9 tttaaccactcattatcaattaggtccctgtattttaacaacgtcctatcaatttggtctctatttttaaccacttactatcaatttagtctctaacata 108  Q
    |||||||| | | |||||||||||| ||| |||||||| | | | ||||| ||||| |   ||| |||||||||||||||||||||||||| ||||||||    
T  25025861 tttaaccatttagtatcaattaggttcctatattttaaaagcttactatctatttgattattatctttaaccacttactatcaatttagtccctaacata 25025762  T
Q  109 ctttcaaaat 118  Q
     |||||||||    
T  25025761 ttttcaaaat 25025752  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 36277315 - 36277227
Alignment:
Q  9 tttaaccactcattatcaattaggtccctgtattttaacaacgtcctatcaatttggtctctatttttaaccacttactatcaatttag 97  Q
    |||||||| | |||||||||||||||||| ||||||  |||| | ||||||||||||||| ||| || ||| | |||||||||||||||    
T  36277315 tttaaccatttattatcaattaggtccctatattttttcaacttactatcaatttggtctttatcttaaactatttactatcaatttag 36277227  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 146
Target Start/End: Complemental strand, 1559528 - 1559446
Alignment:
Q  65 gtctctatttttaaccacttactatcaatttagtctct-aacatactttcaaaatgacaaatatgagcaaaatttgacagagt 146  Q
    |||||||  ||||||| ||||||  |||||||||| || |||||| | ||| |||||| |||||||| |||||||||||||||    
T  1559528 gtctctacatttaaccgcttactgacaatttagtcccttaacatattctcataatgactaatatgagtaaaatttgacagagt 1559446  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 32659796 - 32659865
Alignment:
Q  39 tattttaacaacgtcctatcaatttggtctctatttttaaccacttactatcaatttagtctctaacata 108  Q
    |||||||||||| | ||||||| ||||||||||| ||||||| || ||||||||||||||  ||||||||    
T  32659796 tattttaacaacttactatcaacttggtctctatgtttaacccctcactatcaatttagttcctaacata 32659865  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 4674748 - 4674824
Alignment:
Q  22 tatcaattaggtccctgtattttaacaacgtcctatcaatttggtctctatttttaaccacttactatcaatttagtc 99  Q
    ||||||||| |||| | |||||||||||| | |||| | |||| |||||| ||||||||||||||||| | |||||||    
T  4674748 tatcaattaagtccatatattttaacaacttactattattttgttctcta-ttttaaccacttactatgagtttagtc 4674824  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 4851414 - 4851361
Alignment:
Q  54 ctatcaatttggtctctatttttaaccacttactatcaatttagtctctaacat 107  Q
    |||||||||||||| |||| |||||| | ||| |||||||||| ||||||||||    
T  4851414 ctatcaatttggtccctatctttaactatttagtatcaatttaatctctaacat 4851361  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 28485273 - 28485221
Alignment:
Q  155 tttttgaagtattcgtaatctcagcgacctacttgagagcaccctgcaaagtc 207  Q
    |||||||| |||||||||||| || |||||| ||||||||| ||| |||||||    
T  28485273 tttttgaaatattcgtaatctaagggacctaattgagagcatcctacaaagtc 28485221  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 106
Target Start/End: Complemental strand, 39301421 - 39301389
Alignment:
Q  74 tttaaccacttactatcaatttagtctctaaca 106  Q
    ||||||||||| |||||||||||||||||||||    
T  39301421 tttaaccacttgctatcaatttagtctctaaca 39301389  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 23140025 - 23140110
Alignment:
Q  22 tatcaattaggtccctgtattttaacaacgtcctatcaatttggtctctatttttaaccacttactatcaatttagtctctaacat 107  Q
    |||||||| | ||| | |||||||||||  | ||||||||||||| ||||| |||||||||||  ||||||||||||| |||||||    
T  23140025 tatcaatttgatccgtatattttaacaatatactatcaatttggtatctatatttaaccactttttatcaatttagtccctaacat 23140110  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 1315046 - 1315123
Alignment:
Q  22 tatcaattaggtccctgtattttaacaacgtcctatcaatttggtctctatttttaaccacttactatcaatttagtc 99  Q
    |||||||||||||| | ||||| ||| || | ||||||||||| ||  ||| |||||||||||| |||||||||||||    
T  1315046 tatcaattaggtccttatatttcaaccacttactatcaatttgatccttatatttaaccacttaatatcaatttagtc 1315123  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 1764183 - 1764131
Alignment:
Q  56 atcaatttggtctctatttttaaccacttactatcaatttagtctctaacata 108  Q
    |||||||| ||| |||| ||| |||||||||||||||||||||||||| ||||    
T  1764183 atcaatttagtccctatctttgaccacttactatcaatttagtctctaccata 1764131  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 208
Target Start/End: Complemental strand, 8109417 - 8109285
Alignment:
Q  73 ttttaaccacttactatcaatttagtctctaacatactttcaaaatgacaaatatgagcaaaatttgacagagttgaggcattttttgaagtattcgtaa 172  Q
    |||||||||||||||||||||||||| || |||||| | ||| || ||| ||||||||  |||||||| ||||   || ||||||||||| ||||| |||    
T  8109417 ttttaaccacttactatcaatttagt-tcgaacatagtctcagaaggactaatatgag-taaatttgatagag-acagacattttttgaaatattcataa 8109321  T
Q  173 tctcagcgacctacttgagagcaccctgcaaagtca 208  Q
    | |||| |||||  |||| ||| |||| ||||||||    
T  8109320 tatcagggacctgtttgatagcgccctacaaagtca 8109285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 104
Target Start/End: Original strand, 25416899 - 25416970
Alignment:
Q  33 tccctgtattttaacaacgtcctatcaatttggtctctatttttaaccacttactatcaatttagtctctaa 104  Q
    ||||| ||||||||  || | ||||| ||||||||||||| |||||||| ||||| ||||||||||| ||||    
T  25416899 tccctatattttaatcacttactatcgatttggtctctatatttaaccaattactttcaatttagtccctaa 25416970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 88
Target Start/End: Complemental strand, 32609198 - 32609120
Alignment:
Q  10 ttaaccactcattatcaattaggtccctgtattttaacaacgtcctatcaatttggtctctatttttaaccacttacta 88  Q
    ||||||||| | |||||||||||||| | || ||||||||| | |||  ||| ||||| |||| |||||||||||||||    
T  32609198 ttaaccacttactatcaattaggtccttatagtttaacaacttactaaaaatgtggtccctatatttaaccacttacta 32609120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 1896192 - 1896261
Alignment:
Q  39 tattttaacaacgtcctatcaatttggtctctatttttaaccacttactatcaatttagtctctaacata 108  Q
    ||||||||| || | ||||||||||||||||||  |||| ||  |||||| |||||||||| ||||||||    
T  1896192 tattttaactacttactatcaatttggtctctaagtttatccgattactaacaatttagtccctaacata 1896261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 100
Target Start/End: Original strand, 60070 - 60115
Alignment:
Q  55 tatcaatttggtctctatttttaaccacttactatcaatttagtct 100  Q
    |||||| ||||||| ||  |||||||||||||||||||||||||||    
T  60070 tatcaaattggtctataaatttaaccacttactatcaatttagtct 60115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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