View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0134_1D_high_10 (Length: 322)

Name: NF0134_1D_high_10
Description: NF0134_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0134_1D_high_10
NF0134_1D_high_10
[»] chr3 (2 HSPs)
chr3 (16-308)||(46239893-46240185)
chr3 (24-308)||(23541295-23541579)
[»] chr7 (1 HSPs)
chr7 (16-308)||(3437294-3437574)


Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 16 - 308
Target Start/End: Original strand, 46239893 - 46240185
Alignment:
Q  16 ggacatcatggatgacatgaggacgaatcatgcagtgggtatcaccaaaggtagggcgtggaaagcaaaacagatagctcagaaaattgttgagggtgat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  46239893 ggacatcatggatgacatgaggacgaatcatgcagtgggtatcaccaaaggtagggcgtggaaagctaaacagatagctcagaaaattgttgagggtgat 46239992  T
Q  116 gctgattgtcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtcctggaaacagggtgagtatcactgttgataggccagatccag 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||    
T  46239993 gctgattgtcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtcctggaaatagtgtgagtatcaatgttgataggccagatccag 46240092  T
Q  216 gattacaacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatg 308  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  46240093 gattacaacccaggtttggatctttttacttttgttttgatggttgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatg 46240185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 308
Target Start/End: Original strand, 23541295 - 23541579
Alignment:
Q  24 tggatgacatgaggacgaatcatgcagtgggtatcaccaaaggtagggcgtggaaagcaaaacagatagctcagaaaattgttgagggtgatgctgattg 123  Q
    |||||||||||||||| || |||||||||||||| || |  |||||||| ||||| ||||||||||| |||||||  |||||||| |||||||||||| |    
T  23541295 tggatgacatgaggacaaaccatgcagtgggtattacaatgggtagggcttggaaggcaaaacagattgctcagagtattgttgatggtgatgctgatag 23541394  T
Q  124 tcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtcctggaaacagggtgagtatcactgttgataggccagatccaggattacaa 223  Q
     |||||  | |||||  |||| |||||||| ||||||||||| |||  | ||||||| |  ||||  || | ||| ||||| |||   |||  | | |||    
T  23541395 gcaatatgccatgatttggaggtatgctgcagaacttaaaagggtgaatgctggaaataatgtgaagataaatgtggatagaccaaccccatcaatccaa 23541494  T
Q  224 cccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatg 308  Q
    ||||||||||| ||||| |||||||||||||||||||| || ||||| || |  ||||| ||||| |||||| ||||||| ||||    
T  23541495 cccaggtttggttctttctacttttgttttgatggctgtaagaaaggtttcatcaatgggtgtagaccatttgttggggtagatg 23541579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 16 - 308
Target Start/End: Complemental strand, 3437574 - 3437294
Alignment:
Q  16 ggacatcatggatgacatgaggacgaatcatgcagtgggtatcaccaaaggtagggcgtggaaagcaaaacagatagctcagaaaattgttgagggtgat 115  Q
    ||||||||| |||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||    
T  3437574 ggacatcatcgatgacatgaggacgaatcatgcagtgggta------------gggcgtggaaagcaaaacagatagctcagaaaattgttgagggtgat 3437487  T
Q  116 gctgattgtcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtcctggaaacagggtgagtatcactgttgataggccagatccag 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  3437486 gctgattgtcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtcctggaaacagtgtgagtatcaatgttgataggccagatccag 3437387  T
Q  216 gattacaacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatg 308  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3437386 gattacaacccaggtttggatctttttacttttgttttgatggatgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatg 3437294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 154 times since January 2019
Visitors: 6629