View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0134_1D_high_14 (Length: 284)
Name: NF0134_1D_high_14
Description: NF0134_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0134_1D_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 39813715 - 39813442
Alignment:
| Q |
1 |
atctacgaccgcatgccagagtggaaattgttcaaaccatttgaagcagtaatccgagagagagctctactgtctcggaagttaagacaaacccctacag |
100 |
Q |
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| T |
39813715 |
atctacgaccgcatgccagagtggaaattgttcaaaccatttgaagcagtaatccgagagagagctctactgtctcggaagttaagacaaacccctacag |
39813616 |
T |
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| Q |
101 |
acgagtttgctaaacacaccatagctgctatcctaaggaagaaaccacctgcatggttctcttatggcaattattctactgtcatggctattatgtacta |
200 |
Q |
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| T |
39813615 |
acgagtttgctaaacacaccatagctgctatcctaaggaagaaaccacctgcatggttctcttatggcaattattctactgtcatggctattatgtacta |
39813516 |
T |
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| Q |
201 |
tttacctctctgtgttagagactttcttttgaagaaagcaatgaaataatgatctacactcgtgatgtccatct |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
39813515 |
tttacctctctgtgttagagactttcttttgaagaaagcaatgaaataatgatctacactcgtgctgtccatct |
39813442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 39816593 - 39816335
Alignment:
| Q |
1 |
atctacgaccgcatgccagagtggaaattgttcaaaccatttgaagcagtaatccgagagagagctctactgtctcggaagttaagacaaacccctacag |
100 |
Q |
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|||||| |||||||||| ||||||||| | ||||||||||||||||||| ||||||||||||||||||| |||||| | ||||||| ||||||||||| |
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| T |
39816593 |
atctacaaccgcatgccggagtggaaactattcaaaccatttgaagcagcaatccgagagagagctctattgtctcaggggttaagatcaacccctacag |
39816494 |
T |
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| Q |
101 |
acgagtttgctaaacacaccatagctgctatcctaaggaagaaaccacctgcatggttctcttatggcaattattctactgtcatggctattatgtacta |
200 |
Q |
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| T |
39816493 |
atgagtttgctagacacaccgtagctgctgtccttaggaagaaaccacctgcatggttctcatatggccgttattctactgccatggctgttatgtacca |
39816394 |
T |
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| Q |
201 |
tttacctctctgtgttagagactttcttttgaagaaagcaatgaaataatgatctacac |
259 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
39816393 |
tttacctctctgtgttagagactttctttttaagaaagcaatgaaatgttgatctacac |
39816335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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