View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0134_1D_high_16 (Length: 268)

Name: NF0134_1D_high_16
Description: NF0134_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0134_1D_high_16
NF0134_1D_high_16
[»] chr1 (20 HSPs)
chr1 (27-268)||(3544594-3544835)
chr1 (29-268)||(1248081-1248319)
chr1 (27-168)||(28358396-28358537)
chr1 (27-268)||(5808987-5809228)
chr1 (31-170)||(19014481-19014619)
chr1 (24-178)||(40563048-40563202)
chr1 (27-169)||(52691976-52692118)
chr1 (27-268)||(13867326-13867567)
chr1 (56-170)||(45795710-45795824)
chr1 (23-110)||(27393438-27393525)
chr1 (63-148)||(3074271-3074356)
chr1 (63-148)||(22191311-22191396)
chr1 (27-166)||(38070340-38070479)
chr1 (58-128)||(45270787-45270857)
chr1 (63-148)||(21405363-21405448)
chr1 (103-199)||(20987638-20987734)
chr1 (27-122)||(45795827-45795922)
chr1 (27-73)||(32352803-32352849)
chr1 (102-170)||(25504562-25504630)
chr1 (236-268)||(45795612-45795644)
[»] chr6 (21 HSPs)
chr6 (27-268)||(14843630-14843871)
chr6 (27-169)||(19350449-19350591)
chr6 (27-172)||(32186185-32186330)
chr6 (31-169)||(29976505-29976650)
chr6 (27-169)||(14686501-14686643)
chr6 (39-220)||(25350676-25350857)
chr6 (28-172)||(26514226-26514370)
chr6 (58-143)||(10362664-10362749)
chr6 (24-163)||(7956161-7956299)
chr6 (25-111)||(10919955-10920041)
chr6 (27-169)||(13086044-13086186)
chr6 (63-148)||(29056045-29056130)
chr6 (27-129)||(1104440-1104542)
chr6 (24-114)||(18588909-18588999)
chr6 (27-111)||(34434823-34434907)
chr6 (237-268)||(14686711-14686742)
chr6 (58-111)||(900385-900438)
chr6 (102-166)||(11060430-11060494)
chr6 (108-172)||(13938221-13938285)
chr6 (102-170)||(17078758-17078826)
chr6 (102-170)||(18051017-18051085)
[»] chr5 (19 HSPs)
chr5 (27-268)||(476619-476860)
chr5 (27-213)||(380362-380548)
chr5 (27-170)||(42259784-42259927)
chr5 (84-170)||(22176376-22176462)
chr5 (50-170)||(42039221-42039341)
chr5 (23-128)||(35637681-35637786)
chr5 (63-127)||(41590643-41590707)
chr5 (60-127)||(29572398-29572465)
chr5 (60-127)||(29573775-29573842)
chr5 (60-127)||(29575152-29575219)
chr5 (60-127)||(29576529-29576596)
chr5 (60-127)||(29577906-29577973)
chr5 (60-127)||(29579283-29579350)
chr5 (58-127)||(4297833-4297902)
chr5 (24-162)||(18896068-18896199)
chr5 (51-121)||(15862194-15862264)
chr5 (39-80)||(22437810-22437851)
chr5 (102-170)||(19513033-19513101)
chr5 (108-172)||(33170160-33170224)
[»] scaffold0043 (1 HSPs)
scaffold0043 (28-268)||(34103-34343)
[»] chr3 (23 HSPs)
chr3 (27-268)||(31675337-31675578)
chr3 (27-268)||(31920844-31921085)
chr3 (27-169)||(19875748-19875890)
chr3 (27-128)||(25024337-25024438)
chr3 (27-169)||(53941808-53941950)
chr3 (27-169)||(55367115-55367257)
chr3 (27-170)||(40513217-40513360)
chr3 (58-143)||(52250648-52250733)
chr3 (27-169)||(14307713-14307855)
chr3 (27-128)||(48930272-48930373)
chr3 (23-166)||(46190000-46190143)
chr3 (24-122)||(18381610-18381708)
chr3 (27-170)||(34829904-34830040)
chr3 (58-127)||(6825369-6825438)
chr3 (89-166)||(35537276-35537353)
chr3 (27-170)||(14863958-14864101)
chr3 (66-148)||(31547897-31547980)
chr3 (27-84)||(42807259-42807316)
chr3 (63-148)||(44888430-44888515)
chr3 (108-172)||(962737-962801)
chr3 (23-99)||(9510327-9510403)
chr3 (23-99)||(9518302-9518378)
chr3 (236-268)||(34829825-34829857)
[»] chr7 (19 HSPs)
chr7 (27-169)||(27218615-27218757)
chr7 (27-166)||(19544895-19545034)
chr7 (24-170)||(17504049-17504195)
chr7 (24-170)||(17549019-17549165)
chr7 (39-213)||(20349425-20349598)
chr7 (27-128)||(11341342-11341443)
chr7 (39-166)||(34103985-34104112)
chr7 (63-111)||(8752925-8752973)
chr7 (63-143)||(25018847-25018927)
chr7 (27-170)||(23887588-23887730)
chr7 (27-170)||(23898764-23898906)
chr7 (63-148)||(17056055-17056140)
chr7 (63-153)||(22819246-22819336)
chr7 (58-99)||(41805282-41805323)
chr7 (39-111)||(23054476-23054548)
chr7 (40-110)||(20918524-20918594)
chr7 (27-128)||(13553677-13553778)
chr7 (65-118)||(39658919-39658972)
chr7 (59-111)||(12308647-12308699)
[»] chr2 (8 HSPs)
chr2 (27-169)||(6823916-6824058)
chr2 (27-170)||(11196855-11196998)
chr2 (58-143)||(43310790-43310875)
chr2 (58-128)||(26146761-26146831)
chr2 (58-142)||(10689087-10689170)
chr2 (40-166)||(7301181-7301307)
chr2 (29-169)||(9668501-9668641)
chr2 (102-170)||(15018181-15018249)
[»] chr4 (18 HSPs)
chr4 (63-268)||(2071946-2072151)
chr4 (27-268)||(43516241-43516482)
chr4 (27-169)||(9690927-9691069)
chr4 (23-166)||(56336989-56337132)
chr4 (76-166)||(52617407-52617497)
chr4 (23-170)||(7098986-7099133)
chr4 (63-166)||(36183045-36183148)
chr4 (58-122)||(38296258-38296322)
chr4 (27-202)||(55725199-55725374)
chr4 (102-170)||(49925835-49925903)
chr4 (27-73)||(3129482-3129528)
chr4 (27-73)||(23872969-23873015)
chr4 (39-128)||(2365552-2365641)
chr4 (63-148)||(9777896-9777981)
chr4 (58-115)||(29328301-29328358)
chr4 (87-128)||(41382519-41382560)
chr4 (102-170)||(19114940-19115008)
chr4 (40-124)||(55464379-55464463)
[»] scaffold0189 (1 HSPs)
scaffold0189 (24-169)||(6593-6738)
[»] chr8 (14 HSPs)
chr8 (39-172)||(25193590-25193723)
chr8 (63-177)||(29721439-29721553)
chr8 (27-166)||(15439632-15439764)
chr8 (27-166)||(15530936-15531068)
chr8 (29-170)||(6245593-6245727)
chr8 (23-166)||(37165610-37165753)
chr8 (27-169)||(36025026-36025168)
chr8 (23-169)||(12341072-12341218)
chr8 (27-148)||(18187672-18187793)
chr8 (58-127)||(36492928-36492997)
chr8 (61-111)||(12332411-12332461)
chr8 (102-170)||(6901413-6901481)
chr8 (102-166)||(17659339-17659403)
chr8 (102-170)||(36157658-36157726)
[»] scaffold0048 (1 HSPs)
scaffold0048 (27-111)||(63792-63876)
[»] scaffold0026 (1 HSPs)
scaffold0026 (60-143)||(67611-67694)
[»] scaffold0061 (1 HSPs)
scaffold0061 (58-128)||(55208-55278)
[»] scaffold0017 (1 HSPs)
scaffold0017 (58-128)||(143356-143426)
[»] scaffold0131 (1 HSPs)
scaffold0131 (27-73)||(4049-4095)
[»] scaffold0029 (1 HSPs)
scaffold0029 (27-73)||(134347-134393)
[»] scaffold0002 (2 HSPs)
scaffold0002 (27-73)||(312174-312220)
scaffold0002 (27-73)||(327628-327674)


Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 27 - 268
Target Start/End: Original strand, 3544594 - 3544835
Alignment:
Q  27 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3544594 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 3544693  T
Q  127 gtacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaa 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3544694 gtacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaa 3544793  T
Q  227 tggcgtgtctacttacttttggtatgacaggtggcttggtga 268  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  3544794 tggcgtgtctacttacttttggtatgacaggtggcttggtga 3544835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 29 - 268
Target Start/End: Original strand, 1248081 - 1248319
Alignment:
Q  29 gtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagt 128  Q
    ||||||| | || ||||| |||| || |||||||||||||||| || |||| ||||||||||||||||||| |||||||||||||||||||| | |||||    
T  1248081 gtgttggtgtatattggtggataaaggtggtttttggtataggctgttggtggcgagatatggtgaggaggtagggaggttggaggtagggg-ctggagt 1248179  T
Q  129 acttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaatg 228  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||||| | || |||||||||||||| |||| |||| ||||  |||||||| ||||    
T  1248180 acttcatcttggtggagggaagtagtgaagattagggatggggtgggtgaagctgcggggagttggtttgaggagagggtgtcgaagagggtagggaatg 1248279  T
Q  229 gcgtgtctacttacttttggtatgacaggtggcttggtga 268  Q
    || || ||||||||||||||||||||||||||||||||||    
T  1248280 gcttggctacttacttttggtatgacaggtggcttggtga 1248319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 27 - 168
Target Start/End: Complemental strand, 28358537 - 28358396
Alignment:
Q  27 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 126  Q
    ||||||||| || |||||||||||||||  || |||||||| |||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  28358537 tggtgttggagattgttggtagatagaggcgggttttggtacagggtgttggtggcgagatatggtgaggaggcagggaggttggaggttgggggccgga 28358438  T
Q  127 gtacttcatcttggtggaaggaagtagtgaagattagggatg 168  Q
    ||   ||||||||||||| |||||||| ||||||||||||||    
T  28358437 gtgtctcatcttggtggagggaagtagcgaagattagggatg 28358396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 27 - 268
Target Start/End: Complemental strand, 5809228 - 5808987
Alignment:
Q  27 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 126  Q
    ||||||||||| |||||||| || | || |||  | ||||||||||| || |||||| | ||||||| | |||  |||||||||||||| ||||||||||    
T  5809228 tggtgttggcggatgttggtggacaaaggtgggctctggtatagggttcttgtagcgcggtatggtgtgaaggttgggaggttggaggttgggggccgga 5809129  T
Q  127 gtacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaa 226  Q
    ||  |||||||| |||| |||||||||||||||||||||||||| | ||||| |  || ||  ||||||| || ||| |||| |||| || ||| ||       
T  5809128 gtgtttcatcttagtggcaggaagtagtgaagattagggatggggtaggtgatgcagatggaggttggttcgcagagagggtgtcgaaaaaggtgggggg 5809029  T
Q  227 tggcgtgtctacttacttttggtatgacaggtggcttggtga 268  Q
    |||| |   ||| | |||||||||||||||||||||||||||    
T  5809028 tggcattagtacattcttttggtatgacaggtggcttggtga 5808987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 170
Target Start/End: Original strand, 19014481 - 19014619
Alignment:
Q  31 gttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtac 130  Q
    ||||||| |||||||| || |||| ||| |||||||||   ||| |||| |||||||||||||||||| ||||||||||||||||  |||||||||||      
T  19014481 gttggcggatgttggtggacagaggtgggttttggtattaagtgttggtggcgagatatggtgaggagacagggaggttggaggt-tggggccggagtgt 19014579  T
Q  131 ttcatcttggtggaaggaagtagtgaagattagggatggg 170  Q
    ||| |||||||||| |||  ||||||||||||||||||||    
T  19014580 ttcttcttggtggagggagatagtgaagattagggatggg 19014619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 178
Target Start/End: Original strand, 40563048 - 40563202
Alignment:
Q  24 aagtggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggcc 123  Q
    |||| ||||||| | |||||||| |||||||| || || |||||||| ||  |||| ||||||||||| || ||||||| |||||||||||| |||||||    
T  40563048 aagttgtgttggaggatgttggtggatagagacgggttgtggtatagagttttggtggcgagatatggagatgaggcagagaggttggaggttgggggcc 40563147  T
Q  124 ggagtacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtga 178  Q
    ||| |  ||||||||||||||  ||  ||| |||||||||||||||  |||||||    
T  40563148 ggactgtttcatcttggtggagagagatagcgaagattagggatggagtgggtga 40563202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 169
Target Start/End: Complemental strand, 52692118 - 52691976
Alignment:
Q  27 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 126  Q
    ||||||||| | |||||||| |||||||| || || |||||||||||| |||| ||| | |||||||||||||| |||||||||| ||||| ||| ||||    
T  52692118 tggtgttggaggatgttggtggatagagaggggttctggtatagggtgttggtggcgcggtatggtgaggaggctgggaggttggtggtagagggtcgga 52692019  T
Q  127 gtacttcatcttggtggaaggaagtagtgaagattagggatgg 169  Q
    ||  ||| |||||||||| |||  ||| |||||||| ||||||    
T  52692018 gtgattcttcttggtggagggagatagcgaagattaaggatgg 52691976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 27 - 268
Target Start/End: Original strand, 13867326 - 13867567
Alignment:
Q  27 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 126  Q
    ||||||||||| |||||||| ||||||| |||||| ||||||||||| ||||||||  | |||||||||  ||| ||| |||||||||| |||||| |||    
T  13867326 tggtgttggcggatgttggtggatagaggtggtttatggtatagggtcctggtagctcggtatggtgagacggctgggcggttggaggttgggggcagga 13867425  T
Q  127 gtacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaa 226  Q
    ||  |||||| ||||||    || |||  ||||||||||||||| | || || |  |||||| | |||||||| ||| |||| ||||  |  |||||  |    
T  13867426 gtgtttcatcgtggtggcgaaaaatagcaaagattagggatggggtaggcgatgtagaggggggctggtttgcagagagggtgtcgaagaaagtaggaga 13867525  T
Q  227 tggcgtgtctacttacttttggtatgacaggtggcttggtga 268  Q
    |||      |||||||||||||||||||||||||||||||||    
T  13867526 tggttctagtacttacttttggtatgacaggtggcttggtga 13867567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 170
Target Start/End: Complemental strand, 45795824 - 45795710
Alignment:
Q  56 tggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtg 155  Q
    |||||| ||||||| ||| ||||||||  | |||||||||  ||  ||| |||||||||| |||||| |||||  |||||||||||||  |||||||| |    
T  45795824 tggtttatggtataaggtcctggtagcacggtatggtgagacggttgggcggttggaggttgggggcaggagtgtttcatcttggtggcgggaagtagcg 45795725  T
Q  156 aagattagggatggg 170  Q
    |||||||||||||||    
T  45795724 aagattagggatggg 45795710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 27393438 - 27393525
Alignment:
Q  23 aaagtggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttg 110  Q
    ||||||||||||| |  ||||||| |||||||  ||||| ||||||| |||| |||| || || ||||||||||||||||||||||||    
T  27393438 aaagtggtgttggaggttgttggttgatagaggaggtttatggtatatggtgttggttgctaggtatggtgaggaggcagggaggttg 27393525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 148
Target Start/End: Complemental strand, 3074356 - 3074271
Alignment:
Q  63 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaagga 148  Q
    |||||||||||| |||||||| | |||||||||||||  |||||||||| ||| |||| |||||||  ||| || |||||||||||    
T  3074356 tggtatagggtgttggtagcgcgttatggtgaggaggatgggaggttggcggttggggaccggagtgtttcttcgtggtggaagga 3074271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 148
Target Start/End: Original strand, 22191311 - 22191396
Alignment:
Q  63 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaagga 148  Q
    |||||||||||| |||| ||| | |||||||||||||  |||||||||| ||| ||||||||||||  ||| || |||||||||||    
T  22191311 tggtatagggtgttggtggcgtgttatggtgaggaggatgggaggttggtggttgggggccggagtgtttcttcgtggtggaagga 22191396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 166
Target Start/End: Complemental strand, 38070479 - 38070340
Alignment:
Q  27 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 126  Q
    |||||||||||  ||||||| |||||||  || || |||||||| ||  |||| || || |||||||||||||| ||| |||||||||| ||||| ||||    
T  38070479 tggtgttggcggttgttggtggatagaggagggttgtggtatagagttttggtggcaaggtatggtgaggaggctgggcggttggaggttgggggtcgga 38070380  T
Q  127 gtacttcatcttggtggaaggaagtagtgaagattaggga 166  Q
    ||  |||  |||||||||  ||  ||| ||||||||||||    
T  38070379 gtgtttctacttggtggagagagttagcgaagattaggga 38070340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 128
Target Start/End: Complemental strand, 45270857 - 45270787
Alignment:
Q  58 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagt 128  Q
    |||| ||||||||| |  |||| |||||||||| ||||||||  |||||||||||||| ||||||||||||    
T  45270857 gtttatggtataggattttggtggcgagatatgatgaggaggatgggaggttggaggttgggggccggagt 45270787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 148
Target Start/End: Complemental strand, 21405448 - 21405363
Alignment:
Q  63 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaagga 148  Q
    |||||||||||| |||||||  | |||||||||||||  |||||||||| ||| ||||||| ||||  ||| || |||||||||||    
T  21405448 tggtatagggtgttggtagcacgttatggtgaggaggatgggaggttggtggttgggggccagagtgtttcttcgtggtggaagga 21405363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 199
Target Start/End: Complemental strand, 20987734 - 20987638
Alignment:
Q  103 ggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgc 199  Q
    |||||||||||||||||||| |||||  |||   |||||||| |||  ||| |||||||||||||||||| || ||   ||||| ||||||||||||    
T  20987734 ggaggttggaggtagggggcaggagtggttctctttggtggagggagatagcgaagattagggatgggataggcgattctgaggagagttggtttgc 20987638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 122
Target Start/End: Complemental strand, 45795922 - 45795827
Alignment:
Q  27 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggc 122  Q
    ||||||||||| |||||||| |||| || |||||| ||||||| ||| ||||||||  | |||||||||  ||  ||| |||||||||| ||||||    
T  45795922 tggtgttggcggatgttggtggataaaggtggtttatggtataaggtcctggtagcacggtatggtgagacggttgggcggttggaggttgggggc 45795827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 73
Target Start/End: Original strand, 32352803 - 32352849
Alignment:
Q  27 tggtgttggcgaatgttggtagatagagatggtttttggtatagggt 73  Q
    ||||||||||| |||||||| ||||||| |||||| |||||||||||    
T  32352803 tggtgttggcggatgttggtggatagaggtggtttgtggtatagggt 32352849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 170
Target Start/End: Original strand, 25504562 - 25504630
Alignment:
Q  102 gggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 170  Q
    |||||||||||||| ||||||| ||||  ||| |||||||||  ||| || | ||||||||||||||||    
T  25504562 gggaggttggaggttgggggccagagttgttcttcttggtggcgggaggttgggaagattagggatggg 25504630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 268
Target Start/End: Complemental strand, 45795644 - 45795612
Alignment:
Q  236 tacttacttttggtatgacaggtggcttggtga 268  Q
    ||||||||||||||||||||||||||| |||||    
T  45795644 tacttacttttggtatgacaggtggctaggtga 45795612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 27 - 268
Target Start/End: Original strand, 14843630 - 14843871
Alignment:
Q  27 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  14843630 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggagacagggaggttggaggtagggggacgga 14843729  T
Q  127 gtacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaa 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14843730 gtacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaa 14843829  T
Q  227 tggcgtgtctacttacttttggtatgacaggtggcttggtga 268  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  14843830 tggcgtgtctacttacttttggtatgacaggtggcttggtga 14843871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 27 - 169
Target Start/End: Complemental strand, 19350591 - 19350449
Alignment:
Q  27 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 126  Q
    |||||||||||  ||||| ||||||||| ||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  19350591 tggtgttggcggttgttgatagatagaggtgggttttggtatagggtgttggtggcgagatatggtgaggaggcagggaggttggaggttgggggccgga 19350492  T
Q  127 gtacttcatcttggtggaaggaagtagtgaagattagggatgg 169  Q
    ||   ||||||||||||||||| |||| |||||||||||||||    
T  19350491 gtgtatcatcttggtggaaggaggtagcgaagattagggatgg 19350449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 27 - 172
Target Start/End: Complemental strand, 32186330 - 32186185
Alignment:
Q  27 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 126  Q
    ||||||||||   ||||||| ||||||| ||| ||||||||||||||| |||| ||||||||| |||||| ||| |||||||||||||| ||||||||||    
T  32186330 tggtgttggcagttgttggtggatagaggtgggttttggtatagggtgttggtggcgagatatagtgaggtggctgggaggttggaggttgggggccgga 32186231  T
Q  127 gtacttcatcttggtggaaggaagtagtgaagattagggatgggat 172  Q
    || |||| |||||||||| ||| |||||||||||||||||||||||    
T  32186230 gtgcttcttcttggtggagggaggtagtgaagattagggatgggat 32186185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 31 - 169
Target Start/End: Original strand, 29976505 - 29976650
Alignment:
Q  31 gttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttgga-------ggtagggggcc 123  Q
    |||||||  ||||| ||||||||| ||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||       ||| |||||||    
T  29976505 gttggcggttgttgatagatagaggtgggttttggtatagggtgttggtggcgagatatggtgaggaggcagggaggttggaggttgggggttgggggcc 29976604  T
Q  124 ggagtacttcatcttggtggaaggaagtagtgaagattagggatgg 169  Q
    |||||   ||||||||||||||||| |||| |||||||||||||||    
T  29976605 ggagtgtatcatcttggtggaaggaggtagcgaagattagggatgg 29976650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 27 - 169
Target Start/End: Original strand, 14686501 - 14686643
Alignment:
Q  27 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 126  Q
    ||||||||||| |||||||| |||||||  || |||||||||||||| ||||||||| | ||||| |||  ||  ||| |||||||||||||||||||||    
T  14686501 tggtgttggcggatgttggtggatagaggcggattttggtatagggtcctggtagcgcggtatggggagacggttgggcggttggaggtagggggccgga 14686600  T
Q  127 gtacttcatcttggtggaaggaagtagtgaagattagggatgg 169  Q
    ||  ||||||||||||||  ||||||| |||||||||||||||    
T  14686601 gtgtttcatcttggtggagagaagtagcgaagattagggatgg 14686643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 39 - 220
Target Start/End: Complemental strand, 25350857 - 25350676
Alignment:
Q  39 atgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatctt 138  Q
    |||||||| ||||||||||| || |||||||||||| |||| ||| | |||||||||||||| |||||||||| ||||||||||||||||  ||| | ||    
T  25350857 atgttggtggatagagatgggttctggtatagggtgttggtggcgcggtatggtgaggaggctgggaggttggtggtagggggccggagtgattcttttt 25350758  T
Q  139 ggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggt 220  Q
    ||| || |||  ||| ||||||||||||||| || || |||   || ||| |||||||||| ||| |||| |||| ||||||    
T  25350757 ggttgagggagatagcgaagattagggatggaataggagacacggatgggggttggtttgcagagagggtgtcgaaaagggt 25350676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 28 - 172
Target Start/End: Complemental strand, 26514370 - 26514226
Alignment:
Q  28 ggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggag 127  Q
    |||||||| | ||| |||| |||||||| || || |||||||| ||| |||| ||  | |||||||||||||||||||| |||||||| |||||||||||    
T  26514370 ggtgttggaggatgctggtggatagagaggggttctggtatagagtgttggtggctcggtatggtgaggaggcagggagtttggaggttgggggccggag 26514271  T
Q  128 tacttcatcttggtggaaggaagtagtgaagattagggatgggat 172  Q
    |  |||   |||||||| |||  ||| ||||||||||||||||||    
T  26514270 tggttctatttggtggagggagatagcgaagattagggatgggat 26514226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 58 - 143
Target Start/End: Complemental strand, 10362749 - 10362664
Alignment:
Q  58 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtgg 143  Q
    |||| |||||||||||  |||| |||||||||||||||||||  |||||||||||||| ||||||||||||  ||| |||||||||    
T  10362749 gtttatggtatagggttttggtggcgagatatggtgaggaggatgggaggttggaggtggggggccggagtggttcttcttggtgg 10362664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 163
Target Start/End: Original strand, 7956161 - 7956299
Alignment:
Q  24 aagtggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggcc 123  Q
    ||||| |||||||| ||||| || |||||||||||| |||||||| | ||| |||| || ||||||||||||||||  ||||||||||||| | | ||||    
T  7956161 aagtgatgttggcgtatgttagttgatagagatggtctttggtatcgagtgttggtggctagatatggtgaggaggacgggaggttggagg-atgaggcc 7956259  T
Q  124 ggagtacttcatcttggtggaaggaagtagtgaagattag 163  Q
    |||||  ||| |  ||||||||| | || |||||||||||    
T  7956260 ggagtggttctttatggtggaagaaggttgtgaagattag 7956299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 111
Target Start/End: Original strand, 10919955 - 10920041
Alignment:
Q  25 agtggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttgg 111  Q
    ||||||||||| | |||||||| |||||||  || ||||||||||||||| |||| || || |||||||||||||| ||||||||||    
T  10919955 agtggtgttggaggatgttggttgatagaggggggttttggtatagggtgttggttgctaggtatggtgaggaggcggggaggttgg 10920041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 169
Target Start/End: Complemental strand, 13086186 - 13086044
Alignment:
Q  27 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 126  Q
    ||||||||| | ||||||||||||||||  ||||| |||||||| || || || ||  | ||||| ||||  | ||||||||||||||| ||||||||||    
T  13086186 tggtgttggaggatgttggtagatagagtaggtttgtggtatagtgttctagtcgcccgttatggcgaggttggagggaggttggaggttgggggccgga 13086087  T
Q  127 gtacttcatcttggtggaaggaagtagtgaagattagggatgg 169  Q
    ||  ||| | |||||||||||| |||| || |||||| |||||    
T  13086086 gttgttctttttggtggaaggaggtagggaggattagagatgg 13086044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 148
Target Start/End: Complemental strand, 29056130 - 29056045
Alignment:
Q  63 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaagga 148  Q
    |||||||||||| |||||||  | |||||||||||||  |||||||||| ||| ||||||||||||  ||| || |||||||||||    
T  29056130 tggtatagggtgttggtagcacgttatggtgaggaggatgggaggttggcggttgggggccggagtgtttcttcgtggtggaagga 29056045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 129
Target Start/End: Original strand, 1104440 - 1104542
Alignment:
Q  27 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 126  Q
    ||||||||| |  |||| ||| |||||  |||||| |||||||||||| |||| ||  | |||||||||||||||| |||||||| ||| ||||||| ||    
T  1104440 tggtgttggagtttgttagtaaatagatgtggtttgtggtatagggtgatggttgctcgttatggtgaggaggcagtgaggttggtggttgggggcctga 1104539  T
Q  127 gta 129  Q
    |||    
T  1104540 gta 1104542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 114
Target Start/End: Complemental strand, 18588999 - 18588909
Alignment:
Q  24 aagtggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggagg 114  Q
    ||||||||||||||  |||| || |||||||| || || |||||| | ||| |||| || ||||||||||||||||  |||||||||||||    
T  18588999 aagtggtgttggcgtttgttagttgatagagacgggttatggtatcgagtgttggtggctagatatggtgaggaggacgggaggttggagg 18588909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 111
Target Start/End: Complemental strand, 34434907 - 34434823
Alignment:
Q  27 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttgg 111  Q
    ||||||||||| ||||||||||| ||   | || | |||||||||||  |||| |||||||||||||||||||  ||||||||||    
T  34434907 tggtgttggcggatgttggtagagaggagtagtatatggtatagggttttggtggcgagatatggtgaggaggatgggaggttgg 34434823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 237 - 268
Target Start/End: Original strand, 14686711 - 14686742
Alignment:
Q  237 acttacttttggtatgacaggtggcttggtga 268  Q
    ||||||||||||||||||||||||||||||||    
T  14686711 acttacttttggtatgacaggtggcttggtga 14686742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 900385 - 900438
Alignment:
Q  58 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttgg 111  Q
    ||||||||||||||||| |||  || || || ||||||||||||||||||||||    
T  900385 gtttttggtatagggtgttggctgctaggtacggtgaggaggcagggaggttgg 900438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 11060430 - 11060494
Alignment:
Q  102 gggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattaggga 166  Q
    |||||||||||||| ||||||||||||  ||| |||||||||| ||| |||| |  |||||||||    
T  11060430 gggaggttggaggttgggggccggagttgttcttcttggtggagggaggtagggcggattaggga 11060494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 172
Target Start/End: Complemental strand, 13938285 - 13938221
Alignment:
Q  108 ttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatgggat 172  Q
    |||||||  ||||||||||||  ||||||||||||| ||||  |||||| |||||| ||||||||    
T  13938285 ttggaggatgggggccggagttgttcatcttggtggcaggagatagtgaggattagagatgggat 13938221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 170
Target Start/End: Original strand, 17078758 - 17078826
Alignment:
Q  102 gggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 170  Q
    |||||||||||||| ||||||||||||  ||| |||||||||| ||| |||| |  |||||| ||||||    
T  17078758 gggaggttggaggttgggggccggagttgttcttcttggtggagggaggtagggcggattagagatggg 17078826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 170
Target Start/End: Original strand, 18051017 - 18051085
Alignment:
Q  102 gggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 170  Q
    |||||||||||||| ||||||||||||  ||| |||||||||| ||| |||| |  |||||| ||||||    
T  18051017 gggaggttggaggttgggggccggagttgttcttcttggtggagggaggtagggcggattagagatggg 18051085  T

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Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 27 - 268
Target Start/End: Complemental strand, 476860 - 476619
Alignment:
Q  27 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  476860 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 476761  T
Q  127 gtacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaa 226  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  476760 gtacttcatcttggtggaaggaagtagtgaagattagggacgggatgggtgacgctgaggggagttggtttgcggagcgggtttcgagaagggtaggtaa 476661  T
Q  227 tggcgtgtctacttacttttggtatgacaggtggcttggtga 268  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  476660 tggcgtgtctacttacttttggtatgacaggtggcttggtga 476619  T

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Target: chr5; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 27 - 213
Target Start/End: Complemental strand, 380548 - 380362
Alignment:
Q  27 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 126  Q
    ||||||||||| |||||||| |||||||||||||| |||||||||||||||| |||| | ||||||||||||||||||||||||||||| ||||||||||    
T  380548 tggtgttggcggatgttggtggatagagatggtttctggtatagggtgctggaagcgcggtatggtgaggaggcagggaggttggaggttgggggccgga 380449  T
Q  127 gtacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcga 213  Q
    ||  ||| ||||||| ||||||| |||||||||||||||| ||| | || || | ||||||| | |||||||||||| |||| ||||    
T  380448 gtggttcttcttggtagaaggaaatagtgaagattagggacgggttaggagaaggtgaggggggctggtttgcggagagggtgtcga 380362  T

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Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 27 - 170
Target Start/End: Complemental strand, 42259927 - 42259784
Alignment:
Q  27 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 126  Q
    |||||||| || |||||||| ||||||| ||| |||||||||| |||| | || | ||||||| |||||| ||| ||||| |||||||| ||| ||||||    
T  42259927 tggtgttgacggatgttggtggatagaggtgggttttggtataaggtgtttgtggagagatatcgtgaggtggctgggagtttggaggttgggagccgga 42259828  T
Q  127 gtacttcatcttggtggaaggaagtagtgaagattagggatggg 170  Q
    || |||| |||||||||| ||| |||||||||||||||||||||    
T  42259827 gtgcttcttcttggtggagggaggtagtgaagattagggatggg 42259784  T

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Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 84 - 170
Target Start/End: Original strand, 22176376 - 22176462
Alignment:
Q  84 agatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 170  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||   || ||||||||||||||| ||| ||||||||||||||||    
T  22176376 agatatggtgaggaggcagggaggttggcggttgggggccggagtgtctcttcttggtggaaggaaatagcgaagattagggatggg 22176462  T

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Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 50 - 170
Target Start/End: Original strand, 42039221 - 42039341
Alignment:
Q  50 tagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaa 149  Q
    ||||| ||| ||||||||||||||| |||| |||| ||||||||||| ||  ||| |||||||||  |||||||||||| |||  |||||||||| |||     
T  42039221 tagaggtgggttttggtatagggtgttggtggcgaaatatggtgaggtggttgggcggttggaggatgggggccggagtgctttttcttggtggagggag 42039320  T
Q  150 gtagtgaagattagggatggg 170  Q
     || |||||||||||||||||    
T  42039321 ttaatgaagattagggatggg 42039341  T

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Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 128
Target Start/End: Complemental strand, 35637786 - 35637681
Alignment:
Q  23 aaagtggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggc 122  Q
    ||||||||||||| |  ||||||| |||||||  ||||| ||||| | |||| |||| ||||| ||||| |||||||||| || ||||||||| |||| |    
T  35637786 aaagtggtgttggaggttgttggttgatagaggaggtttatggtacaaggtgttggttgcgaggtatggcgaggaggcagtgaagttggaggttggggac 35637687  T
Q  123 cggagt 128  Q
    ||||||    
T  35637686 cggagt 35637681  T

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Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 41590707 - 41590643
Alignment:
Q  63 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggag 127  Q
    |||||||||||| |||| ||||| |||||||||||||  |||||||||| ||| |||||||||||    
T  41590707 tggtatagggtgttggtggcgaggtatggtgaggaggatgggaggttggcggttgggggccggag 41590643  T

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Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 127
Target Start/End: Original strand, 29572398 - 29572465
Alignment:
Q  60 ttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggag 127  Q
    |||||||| |||||| |||  || || |||||||||||||||| |||||||||||| |||||||||||    
T  29572398 ttttggtaaagggtgttggctgctaggtatggtgaggaggcagagaggttggaggttgggggccggag 29572465  T

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Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 127
Target Start/End: Original strand, 29573775 - 29573842
Alignment:
Q  60 ttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggag 127  Q
    |||||||| |||||| |||  || || |||||||||||||||| |||||||||||| |||||||||||    
T  29573775 ttttggtaaagggtgttggctgctaggtatggtgaggaggcagagaggttggaggttgggggccggag 29573842  T

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Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 127
Target Start/End: Original strand, 29575152 - 29575219
Alignment:
Q  60 ttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggag 127  Q
    |||||||| |||||| |||  || || |||||||||||||||| |||||||||||| |||||||||||    
T  29575152 ttttggtaaagggtgttggctgctaggtatggtgaggaggcagagaggttggaggttgggggccggag 29575219  T

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Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 127
Target Start/End: Original strand, 29576529 - 29576596
Alignment:
Q  60 ttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggag 127  Q
    |||||||| |||||| |||  || || |||||||||||||||| |||||||||||| |||||||||||    
T  29576529 ttttggtaaagggtgttggctgctaggtatggtgaggaggcagagaggttggaggttgggggccggag 29576596  T

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Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 127
Target Start/End: Original strand, 29577906 - 29577973
Alignment:
Q  60 ttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggag 127  Q
    |||||||| |||||| |||  || || |||||||||||||||| |||||||||||| |||||||||||    
T  29577906 ttttggtaaagggtgttggctgctaggtatggtgaggaggcagagaggttggaggttgggggccggag 29577973  T

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Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 127
Target Start/End: Original strand, 29579283 - 29579350
Alignment:
Q  60 ttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggag 127  Q
    |||||||| |||||| |||  || || |||||||||||||||| |||||||||||| |||||||||||    
T  29579283 ttttggtaaagggtgttggctgctaggtatggtgaggaggcagagaggttggaggttgggggccggag 29579350  T

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Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 127
Target Start/End: Original strand, 4297833 - 4297902
Alignment:
Q  58 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggag 127  Q
    |||| |||||||||||| |||| ||||| |||||||||||||  |||||||||| ||| |||| ||||||    
T  4297833 gtttatggtatagggtgttggtggcgaggtatggtgaggaggatgggaggttggcggttggggcccggag 4297902  T

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Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 162
Target Start/End: Complemental strand, 18896199 - 18896068
Alignment:
Q  24 aagtggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggcc 123  Q
    |||||||||||| || ||||||| |||||||  || || ||||||||| || ||| |||||| ||| |||||| ||  |||||||||||       ||||    
T  18896199 aagtggtgttggagattgttggttgatagaggagggttgtggtataggatgttggcagcgaggtatcgtgaggtggatgggaggttgga-------ggcc 18896107  T
Q  124 ggagtacttcatcttggtggaaggaagtagtgaagatta 162  Q
    | |||| ||| |||||||||| |||||||| ||||||||    
T  18896106 gaagtatttcttcttggtggagggaagtagcgaagatta 18896068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 121
Target Start/End: Original strand, 15862194 - 15862264
Alignment:
Q  51 agagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtaggggg 121  Q
    |||||||| ||||||||||||||| || | || || |||||||| ||||| ||| |||||||||| |||||    
T  15862194 agagatgggttttggtatagggtgttgattgctaggtatggtgaagaggctgggcggttggaggttggggg 15862264  T

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Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 80
Target Start/End: Complemental strand, 22437851 - 22437810
Alignment:
Q  39 atgttggtagatagagatggtttttggtatagggtgctggta 80  Q
    ||||| ||||||||||||||||| |||||||||||| |||||    
T  22437851 atgttagtagatagagatggtttgtggtatagggtgttggta 22437810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 170
Target Start/End: Original strand, 19513033 - 19513101
Alignment:
Q  102 gggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 170  Q
    |||||||||||||| ||||||||||||  ||| |||||||||| ||| |||| || |||| | ||||||    
T  19513033 gggaggttggaggtggggggccggagttgttcttcttggtggagggaggtagggaggattcgagatggg 19513101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 172
Target Start/End: Complemental strand, 33170224 - 33170160
Alignment:
Q  108 ttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatgggat 172  Q
    |||||||  ||||||||||||  |||||||||||||  |||  |||||| |||||||||||||||    
T  33170224 ttggaggatgggggccggagttgttcatcttggtggcgggagatagtgaggattagggatgggat 33170160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 28 - 268
Target Start/End: Original strand, 34103 - 34343
Alignment:
Q  28 ggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggag 127  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  34103 ggtgttggcgaatgttggtagagagagatggtttttggtatagggtgctggtagcgagatatggtgaggagacagggaggttggaggtagggggccggag 34202  T
Q  128 tacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaat 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  34203 tacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagaataggtaat 34302  T
Q  228 ggcgtgtctacttacttttggtatgacaggtggcttggtga 268  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  34303 ggcgtgtctacttacttttggtatgacaggtggcttggtga 34343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 27 - 268
Target Start/End: Complemental strand, 31675578 - 31675337
Alignment:
Q  27 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 126  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  31675578 tggtgttggcgaatgttggtggatagaggtggtttttggtatagggtgctggtggtgagatatggtgaggaggcagggaggttggaggtagggggccgga 31675479  T
Q  127 gtacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaa 226  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||| ||||||||||||||| | |||||||||    
T  31675478 gtacttcatcttggtggaaggaagtagtgaagattagggacgggatgggtgtagatgaggggagttggtttgaggagcgggtttcgaggaaggtaggtaa 31675379  T
Q  227 tggcgtgtctacttacttttggtatgacaggtggcttggtga 268  Q
    ||||| ||||||||||||||||||||| ||||||||||||||    
T  31675378 tggcgcgtctacttacttttggtatgataggtggcttggtga 31675337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 27 - 268
Target Start/End: Original strand, 31920844 - 31921085
Alignment:
Q  27 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 126  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  31920844 tggtgttggcgaatgttggtggatagaggtggtttttggtatagggtgctggtggtgagatatggtgaggaggcagggaggttggaggtagggggccgga 31920943  T
Q  127 gtacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaa 226  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||||||  ||||||||||||||||||| |||| |||||||||| | |||||||||    
T  31920944 gtacttcatcttggtagaaggaagtagtgaagattagggacgggatgggtgtagatgaggggagttggtttgaggagtgggtttcgaggaaggtaggtaa 31921043  T
Q  227 tggcgtgtctacttacttttggtatgacaggtggcttggtga 268  Q
    ||||| ||||||||||||||||||||| ||||||||||||||    
T  31921044 tggcgcgtctacttacttttggtatgataggtggcttggtga 31921085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 27 - 169
Target Start/End: Complemental strand, 19875890 - 19875748
Alignment:
Q  27 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 126  Q
    |||||||||||  ||||| ||||||||| ||| ||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||| ||||||||||    
T  19875890 tggtgttggcggttgttgatagatagaggtgggttttggtatagggtgttggtggcgagatatggtgaggaggcaaggaggttggaggttgggggccgga 19875791  T
Q  127 gtacttcatcttggtggaaggaagtagtgaagattagggatgg 169  Q
    ||   ||||||||||||||||| |||| |||||||| ||||||    
T  19875790 gtgtatcatcttggtggaaggaggtagcgaagattaaggatgg 19875748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 27 - 128
Target Start/End: Original strand, 25024337 - 25024438
Alignment:
Q  27 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 126  Q
    ||||||||| | ||||| || ||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||| ||| ||||| ||||    
T  25024337 tggtgttggaggatgttagtggatagagatggtttttggtatagggtgttggaagctagatatggtgaggaggcagggaggttggcggttgggggtcgga 25024436  T
Q  127 gt 128  Q
    ||    
T  25024437 gt 25024438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 169
Target Start/End: Complemental strand, 53941950 - 53941808
Alignment:
Q  27 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 126  Q
    ||||||||| | |||||||| |||||||| || || ||||||| |||| |||| ||| | |||||||||||||| |||||||||| ||||||||||||||    
T  53941950 tggtgttggaggatgttggtggatagagaggggttctggtataaggtgttggtggcgcggtatggtgaggaggctgggaggttggtggtagggggccgga 53941851  T
Q  127 gtacttcatcttggtggaaggaagtagtgaagattagggatgg 169  Q
    ||  ||| | || ||||| |||  ||| |||||||||||||||    
T  53941850 gtgattctttttagtggagggagatagcgaagattagggatgg 53941808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 169
Target Start/End: Complemental strand, 55367257 - 55367115
Alignment:
Q  27 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 126  Q
    ||||||||| | ||||| || ||||||| ||| || ||||||| |||  || |||||||||||||||||||||||| |||||||||||||||||||||||    
T  55367257 tggtgttggaggatgttagttgatagaggtgggttgtggtataaggttttgttagcgagatatggtgaggaggcagagaggttggaggtagggggccgga 55367158  T
Q  127 gtacttcatcttggtggaaggaagtagtgaagattagggatgg 169  Q
    ||  ||| | |||||||| |||  ||  ||||||||| |||||    
T  55367157 gtgattccttttggtggatggagataacgaagattagagatgg 55367115  T

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Target: chr3; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 27 - 170
Target Start/End: Original strand, 40513217 - 40513360
Alignment:
Q  27 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 126  Q
    ||||||||||| |||||||| ||||||| |||||| ||||||||||| ||||||||  | |||||||||  ||| ||| |||||||||| |||||| |||    
T  40513217 tggtgttggcggatgttggtggatagaggtggtttatggtatagggtcctggtagctcggtatggtgagacggctgggcggttggaggttgggggcagga 40513316  T
Q  127 gtacttcatcttggtggaaggaagtagtgaagattagggatggg 170  Q
    ||  |||| | ||||||  |||| |||  |||||||||||||||    
T  40513317 gtgtttcaccgtggtggcgggaattagcaaagattagggatggg 40513360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 58 - 143
Target Start/End: Original strand, 52250648 - 52250733
Alignment:
Q  58 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtgg 143  Q
    |||| |||||||||||| |||| |||||||||||||||||||  |||||||||||||| ||||||||||||  ||| |||||||||    
T  52250648 gtttatggtatagggtgttggtggcgagatatggtgaggaggatgggaggttggaggttgggggccggagtggttcttcttggtgg 52250733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 27 - 169
Target Start/End: Complemental strand, 14307855 - 14307713
Alignment:
Q  27 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 126  Q
    ||||||||| ||||||| || |||||||  || || |||| ||| ||  |||  |||||||||||||||||||||||||| |||||| | ||||||||||    
T  14307855 tggtgttggagaatgttcgtggatagagcggggttctggtgtagagtattggcggcgagatatggtgaggaggcagggagattggagtttgggggccgga 14307756  T
Q  127 gtacttcatcttggtggaaggaagtagtgaagattagggatgg 169  Q
    ||   ||| ||||||||| |||  ||| |||||||||||||||    
T  14307755 gtgtgtcaccttggtggagggagatagcgaagattagggatgg 14307713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 27 - 128
Target Start/End: Complemental strand, 48930373 - 48930272
Alignment:
Q  27 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 126  Q
    |||||||||||  |||||||||| ||  || |||| |||||||||||  |||| |||||||||||||||||||  |||||||||||||| |||||| |||    
T  48930373 tggtgttggcggctgttggtagagaggaatagtttatggtatagggttttggtggcgagatatggtgaggaggatgggaggttggaggttgggggctgga 48930274  T
Q  127 gt 128  Q
    ||    
T  48930273 gt 48930272  T

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Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 166
Target Start/End: Complemental strand, 46190143 - 46190000
Alignment:
Q  23 aaagtggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggc 122  Q
    |||||| ||||||||  ||||||| |||| ||  ||||| ||||| |||||  |||| ||||| |||||||||||||| | | |||||||||| ||||||    
T  46190143 aaagtgatgttggcggttgttggtggataaaggaggtttgtggtacagggtattggtggcgaggtatggtgaggaggctgagcggttggaggttgggggc 46190044  T
Q  123 cggagtacttcatcttggtggaaggaagtagtgaagattaggga 166  Q
    ||||||  |||   ||| |||| ||| |||| ||||||||||||    
T  46190043 cggagtgtttctaattgatggagggaggtagcgaagattaggga 46190000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 122
Target Start/End: Complemental strand, 18381708 - 18381610
Alignment:
Q  24 aagtggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggc 122  Q
    |||||||||||| |||||||||| |||||||  || || |||||| ||||  |||| |||||||||||||| ||||  || |||||||| |||||||||    
T  18381708 aagtggtgttggagaatgttggttgatagaggagggttatggtattgggttttggtggcgagatatggtgacgaggatggaaggttggatgtagggggc 18381610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 170
Target Start/End: Complemental strand, 34830040 - 34829904
Alignment:
Q  27 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 126  Q
    ||||||||||| |||||||| |||| || ||| || ||||||||||| |||| |||| ||||||||||| |       || | |||||| |||| |||||    
T  34830040 tggtgttggcggatgttggtggatatagttgggttatggtatagggtactggcagcgcgatatggtgagaa-------agatgggaggttggggcccgga 34829948  T
Q  127 gtacttcatcttggtggaaggaagtagtgaagattagggatggg 170  Q
    ||  |||||||||||||   ||||||| ||||||||||||||||    
T  34829947 gtgtttcatcttggtggtgtgaagtagcgaagattagggatggg 34829904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 127
Target Start/End: Complemental strand, 6825438 - 6825369
Alignment:
Q  58 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggag 127  Q
    |||| |||||||||||| |||| ||| | |||||||||||||  |||||||||| ||| |||||||||||    
T  6825438 gtttatggtatagggtgttggtggcgcggtatggtgaggaggatgggaggttggcggttgggggccggag 6825369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 166
Target Start/End: Complemental strand, 35537353 - 35537276
Alignment:
Q  89 tggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattaggga 166  Q
    ||||||||||||| |||| |||||||| ||||||||||||  ||| | |||||||| ||| || |||| |||||||||    
T  35537353 tggtgaggaggcaaggagattggaggttgggggccggagtgattcttattggtggagggaggtggtgaggattaggga 35537276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 170
Target Start/End: Original strand, 14863958 - 14864101
Alignment:
Q  27 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 126  Q
    ||||||||| | |||||||| |||| ||  ||||| |||||||| || || || ||  | ||||| |||| ||  |||||||||||||| ||||||||||    
T  14863958 tggtgttggaggatgttggtcgataaagtaggtttatggtatagtgttcttgtcgcctgttatggcgaggtgggtgggaggttggaggtggggggccgga 14864057  T
Q  127 gtacttcatcttggtggaaggaagtagtgaagattagggatggg 170  Q
    ||  ||| |||||||||| ||| |||| || |||| | ||||||    
T  14864058 gttgttcttcttggtggagggaggtagggaggattcgagatggg 14864101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 148
Target Start/End: Complemental strand, 31547980 - 31547897
Alignment:
Q  66 tatagggtgctggtagcgagatatggtgaggaggcagggaggttggagg-tagggggccggagtacttcatcttggtggaagga 148  Q
    ||||||||| |||||||| | |||||||||||||  |||||||||| || | ||||||||||||  ||| || |||||||||||    
T  31547980 tatagggtgttggtagcgcgttatggtgaggaggatgggaggttggtggttggggggccggagtgtttcttcgtggtggaagga 31547897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 42807316 - 42807259
Alignment:
Q  27 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcga 84  Q
    ||||||||||| |||||||||||||| ||| |||| |||| ||||||| |||| ||||    
T  42807316 tggtgttggcggatgttggtagatagggatagtttatggtttagggtgttggtggcga 42807259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 148
Target Start/End: Complemental strand, 44888515 - 44888430
Alignment:
Q  63 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaagga 148  Q
    |||||||||||| |||| ||| | |||||||||||||  |||||||||| ||| | ||| ||||||  ||| || |||||||||||    
T  44888515 tggtatagggtgttggtggcgcgttatggtgaggaggatgggaggttggtggttgagggtcggagtgtttcttcgtggtggaagga 44888430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 962737 - 962801
Alignment:
Q  108 ttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatgggat 172  Q
    |||||||  ||||| ||||||  |||||||||||||| |||  |||||| |||||||||||||||    
T  962737 ttggaggatgggggtcggagttgttcatcttggtggagggagatagtgaggattagggatgggat 962801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 9510403 - 9510327
Alignment:
Q  23 aaagtggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggagg 99  Q
    ||||||||||||| | ||||| ||  |||||| ||||||||||||| ||||| |||  || || |||||||||||||    
T  9510403 aaagtggtgttggaggatgttagttaatagaggtggtttttggtatcgggtgttggctgcaaggtatggtgaggagg 9510327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 9518378 - 9518302
Alignment:
Q  23 aaagtggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggagg 99  Q
    ||||||||||||| | ||||| ||  |||||| ||||||||||||| ||||| |||  || || |||||||||||||    
T  9518378 aaagtggtgttggaggatgttagttaatagaggtggtttttggtatcgggtgttggctgcaaggtatggtgaggagg 9518302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 268
Target Start/End: Complemental strand, 34829857 - 34829825
Alignment:
Q  236 tacttacttttggtatgacaggtggcttggtga 268  Q
    ||||| |||||||||||||||||||||||||||    
T  34829857 tactttcttttggtatgacaggtggcttggtga 34829825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 9e-42; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 27 - 169
Target Start/End: Original strand, 27218615 - 27218757
Alignment:
Q  27 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 126  Q
    |||||||||||  ||||| ||||||||| ||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||| ||||||||||    
T  27218615 tggtgttggcggttgttgatagatagaggtggattttggtatagggtgttggtggcgagatatggtgaggaggcagggaggttggcggttgggggccgga 27218714  T
Q  127 gtacttcatcttggtggaaggaagtagtgaagattagggatgg 169  Q
    ||   ||||||||||||||||| |||| |||||||||||||||    
T  27218715 gtgtatcatcttggtggaaggaggtagcgaagattagggatgg 27218757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 27 - 166
Target Start/End: Original strand, 19544895 - 19545034
Alignment:
Q  27 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 126  Q
    ||||||||||| |||||||| ||||||||||| ||||||||||||||| |||   |  |||||||||||||||||| |||||||||||| ||||||||||    
T  19544895 tggtgttggcggatgttggtggatagagatgggttttggtatagggtgttggcgacacgatatggtgaggaggcagagaggttggaggttgggggccgga 19544994  T
Q  127 gtacttcatcttggtggaaggaagtagtgaagattaggga 166  Q
    ||  ||| |  |||||||||||  ||||||||||||||||    
T  19544995 gtggttctttgtggtggaaggatctagtgaagattaggga 19545034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 170
Target Start/End: Original strand, 17504049 - 17504195
Alignment:
Q  24 aagtggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggcc 123  Q
    |||||||||||||  ||||| || |||||||||||| |||||||| | ||| |||| |||||||| ||||||||||  |||||||||||||  |||||||    
T  17504049 aagtggtgttggcatatgttagttgatagagatggtctttggtatcgagtgttggtggcgagatacggtgaggaggatgggaggttggaggatgggggcc 17504148  T
Q  124 ggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 170  Q
    |||||  ||| |  ||||||||||| ||  |||||||||| ||||||    
T  17504149 ggagtggttctttgtggtggaaggaggttatgaagattagagatggg 17504195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 170
Target Start/End: Complemental strand, 17549165 - 17549019
Alignment:
Q  24 aagtggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggcc 123  Q
    |||||||||||||  ||||| || |||||||||||| |||||||| | ||| |||| |||||||| ||||||||||  |||||||||||||  |||||||    
T  17549165 aagtggtgttggcatatgttagttgatagagatggtctttggtatcgagtgttggtggcgagatacggtgaggaggatgggaggttggaggatgggggcc 17549066  T
Q  124 ggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 170  Q
    |||||  ||| |  ||||||||||| ||  |||||||||| ||||||    
T  17549065 ggagtggttctttgtggtggaaggaggttatgaagattagagatggg 17549019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 39 - 213
Target Start/End: Complemental strand, 20349598 - 20349425
Alignment:
Q  39 atgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatctt 138  Q
    |||||||||||||||||  | || |||||||||||| |||| ||  | |||||||||||||||||||||||||||||||||| | |||||  |||   ||    
T  20349598 atgttggtagatagagaaaggttatggtatagggtgttggtggctcggtatggtgaggaggcagggaggttggaggtagggg-caggagtggttctcttt 20349500  T
Q  139 ggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcga 213  Q
    |||||| |||  ||| |||||||||||||||||| || ||   ||||| | |||||||||| ||| |||| ||||    
T  20349499 ggtggagggagatagcgaagattagggatgggataggcgattctgaggagggttggtttgcagagagggtgtcga 20349425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 128
Target Start/End: Complemental strand, 11341443 - 11341342
Alignment:
Q  27 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 126  Q
    ||||||||| | ||||||||  ||||| | || ||||||||||||||| |||  || || ||||||||||||||||||||||||||||| ||||||||||    
T  11341443 tggtgttggaggatgttggtttatagatagggattttggtatagggtgttggctgctaggtatggtgaggaggcagggaggttggaggtcgggggccgga 11341344  T
Q  127 gt 128  Q
    ||    
T  11341343 gt 11341342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 166
Target Start/End: Complemental strand, 34104112 - 34103985
Alignment:
Q  39 atgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatctt 138  Q
    |||||| | |||| ||| || ||||||||||||||| |||| ||| | || |||||||||||| ||||||||||||  |||||| |||||  ||| | ||    
T  34104112 atgttgatggataaagaggggttttggtatagggtgttggtggcgcgttacggtgaggaggcaaggaggttggaggatgggggctggagtggttcttgtt 34104013  T
Q  139 ggtggaaggaagtagtgaagattaggga 166  Q
    ||||||||||  ||||||||||||||||    
T  34104012 ggtggaaggatttagtgaagattaggga 34103985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 8752925 - 8752973
Alignment:
Q  63 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttgg 111  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  8752925 tggtatagggtgctggtggcgagatatggtgaggaggctgggaggttgg 8752973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 143
Target Start/End: Original strand, 25018847 - 25018927
Alignment:
Q  63 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtgg 143  Q
    |||||||||||| |||| || ||||||||||||||||| |||||||||||||| ||||| || |||  ||| |||||||||    
T  25018847 tggtatagggtgttggtggcaagatatggtgaggaggctgggaggttggaggttgggggtcgaagtggttcttcttggtgg 25018927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 170
Target Start/End: Complemental strand, 23887730 - 23887588
Alignment:
Q  27 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 126  Q
    ||||||||| | ||| ||||||| |||| ||  || |||||||||||  |||  | ||| || |||||||||||||| ||||||||||| ||||| ||||    
T  23887730 tggtgttggaggatgctggtagacagaggtgagttctggtatagggttttggcggtgaggtacggtgaggaggcagg-aggttggaggttgggggtcgga 23887632  T
Q  127 gtacttcatcttggtggaaggaagtagtgaagattagggatggg 170  Q
    ||  ||| |||||||||| |||  ||| ||||||||||||||||    
T  23887631 gtgtttcttcttggtggagggagatagcgaagattagggatggg 23887588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 170
Target Start/End: Complemental strand, 23898906 - 23898764
Alignment:
Q  27 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 126  Q
    ||||||||| | ||| ||||||| |||| ||  || |||||||||||  |||  | ||| || |||||||||||||| ||||||||||| ||||| ||||    
T  23898906 tggtgttggaggatgctggtagacagaggtgagttctggtatagggttttggcggtgaggtacggtgaggaggcagg-aggttggaggttgggggtcgga 23898808  T
Q  127 gtacttcatcttggtggaaggaagtagtgaagattagggatggg 170  Q
    ||  ||| |||||||||| |||  ||| ||||||||||||||||    
T  23898807 gtgtttcttcttggtggagggagatagcgaagattagggatggg 23898764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 148
Target Start/End: Complemental strand, 17056140 - 17056055
Alignment:
Q  63 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaagga 148  Q
    |||||||||||| |||| ||| | |||||||||||||  |||||||||| ||| ||||||||||||  ||| || |||||||||||    
T  17056140 tggtatagggtgttggtggcgcgttatggtgaggaggatgggaggttggtggttgggggccggagtgtttcttcgtggtggaagga 17056055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 153
Target Start/End: Original strand, 22819246 - 22819336
Alignment:
Q  63 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtag 153  Q
    |||||||||||| |||||||| | |||||||||||||   ||||||||| ||| ||||||||||||  ||| |  ||||||||||| ||||    
T  22819246 tggtatagggtgttggtagcgcgttatggtgaggaggacaggaggttggcggttgggggccggagtgtttctttgtggtggaaggaggtag 22819336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 41805282 - 41805323
Alignment:
Q  58 gtttttggtatagggtgctggtagcgagatatggtgaggagg 99  Q
    ||||||||||||||||| |||| |||||||||||||||||||    
T  41805282 gtttttggtatagggtgttggtggcgagatatggtgaggagg 41805323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 111
Target Start/End: Original strand, 23054476 - 23054548
Alignment:
Q  39 atgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttgg 111  Q
    ||||| || |||||||  || ||||||||||||||| |||  || ||| ||||||||||||||||||||||||    
T  23054476 atgttagttgatagaggagggttttggtatagggtgttggcggctagacatggtgaggaggcagggaggttgg 23054548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 110
Target Start/End: Complemental strand, 20918594 - 20918524
Alignment:
Q  40 tgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttg 110  Q
    |||| ||||||||||  ||||| |||||||||||||| ||| |  | ||||||||| ||||||||||||||    
T  20918594 tgttagtagatagaggaggtttgtggtatagggtgctagtaactcgttatggtgagaaggcagggaggttg 20918524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 128
Target Start/End: Original strand, 13553677 - 13553778
Alignment:
Q  27 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 126  Q
    ||||||||| | ||||||||||||||||  || || |||||||| || || || ||  | ||||| ||||  | ||||||||||||||| ||||||||||    
T  13553677 tggtgttggaggatgttggtagatagagtagggttgtggtatagtgttctagtcgcccgttatggcgaggttggagggaggttggaggttgggggccgga 13553776  T
Q  127 gt 128  Q
    ||    
T  13553777 gt 13553778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 118
Target Start/End: Original strand, 39658919 - 39658972
Alignment:
Q  65 gtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagg 118  Q
    |||||||||| |||| ||| | |||||||||||||| |||||||||| ||||||    
T  39658919 gtatagggtgttggtggcgcggtatggtgaggaggctgggaggttgggggtagg 39658972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 12308647 - 12308699
Alignment:
Q  59 tttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttgg 111  Q
    |||||||||||||||| |||  || || ||||||||||||||| |||||||||    
T  12308647 tttttggtatagggtgttggctgcaaggtatggtgaggaggcatggaggttgg 12308699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 27 - 169
Target Start/End: Complemental strand, 6824058 - 6823916
Alignment:
Q  27 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 126  Q
    ||||||||| |||||||||| |||||||  || || |||||||||||  |||  |||||||||| |||||||||||||||||||||||| ||||||||||    
T  6824058 tggtgttggagaatgttggtggatagagcggggttctggtatagggttttggcggcgagatatgttgaggaggcagggaggttggaggttgggggccgga 6823959  T
Q  127 gtacttcatcttggtggaaggaagtagtgaagattagggatgg 169  Q
    ||  |||| | ||||||||||| |||| |||||||||||||||    
T  6823958 gtgtttcaccgtggtggaaggaggtagcgaagattagggatgg 6823916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 27 - 170
Target Start/End: Complemental strand, 11196998 - 11196855
Alignment:
Q  27 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 126  Q
    ||||||||||||||| |||| |||||||  || || ||||||||||| ||||||||| | |||||||||   |  ||| |||||||||| ||||||||||    
T  11196998 tggtgttggcgaatgatggtggatagaggcgggttatggtatagggttctggtagcgcggtatggtgagacagttgggcggttggaggttgggggccgga 11196899  T
Q  127 gtacttcatcttggtggaaggaagtagtgaagattagggatggg 170  Q
    ||  |||||||||||||  ||||||||  |||||||||||||||    
T  11196898 gtgtttcatcttggtggcgggaagtagctaagattagggatggg 11196855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 58 - 143
Target Start/End: Complemental strand, 43310875 - 43310790
Alignment:
Q  58 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtgg 143  Q
    |||| |||||||||||| |||| ||||||||||| |||||||  |||||||||||||| ||||||||||||  ||| |||||||||    
T  43310875 gtttgtggtatagggtgttggtggcgagatatggcgaggaggatgggaggttggaggttgggggccggagtggttcttcttggtgg 43310790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 128
Target Start/End: Complemental strand, 26146831 - 26146761
Alignment:
Q  58 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagt 128  Q
    |||| |||||||||||| |||| ||||||||||| |||||||  |||||||||||||| ||||||||||||    
T  26146831 gtttgtggtatagggtgttggtggcgagatatggcgaggaggatgggaggttggaggttgggggccggagt 26146761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 142
Target Start/End: Complemental strand, 10689170 - 10689087
Alignment:
Q  58 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtg 142  Q
    |||| |||||||||||| |||| | |||||||||||| |||||  |||||||||||||  |||||||||||  ||| ||||||||    
T  10689170 gtttatggtatagggtgttggtggtgagatatggtgatgaggctaggaggttggaggt-tggggccggagtggttcttcttggtg 10689087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 166
Target Start/End: Complemental strand, 7301307 - 7301181
Alignment:
Q  40 tgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttg 139  Q
    ||||||| ||||||| ||| |||| |||||||||| |||| | ||| || ||| ||||| ||| |||||||||||| ||||| |  |||   || |||||    
T  7301307 tgttggtggatagaggtgggttttagtatagggtgttggtggtgaggtacggtaaggagacagagaggttggaggttgggggacatagtgtctcttcttg 7301208  T
Q  140 gtggaaggaagtagtgaagattaggga 166  Q
    ||||| |||  ||| ||||||||||||    
T  7301207 gtggagggagatagcgaagattaggga 7301181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 169
Target Start/End: Original strand, 9668501 - 9668641
Alignment:
Q  29 gtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagt 128  Q
    ||||||| | ||||||||||||||||  || || |||||||| || || || ||  | ||||| ||||  | ||||||||||||||| ||||||||||||    
T  9668501 gtgttggaggatgttggtagatagagtagggttgtggtatagtgttctagtcgcccgttatggcgaggttggagggaggttggaggttgggggccggagt 9668600  T
Q  129 acttcatcttggtggaaggaagtagtgaagattagggatgg 169  Q
      ||| | |||||||| ||| || | || |||||| |||||    
T  9668601 tgttcttattggtggagggaggtggggaggattagagatgg 9668641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 170
Target Start/End: Complemental strand, 15018249 - 15018181
Alignment:
Q  102 gggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 170  Q
    |||||||||||||| |||||||| |||  ||| |||||||||  ||| |||| || |||||||||||||    
T  15018249 gggaggttggaggttgggggccgaagttgttcttcttggtggcgggaggtagggaggattagggatggg 15018181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 63 - 268
Target Start/End: Complemental strand, 2072151 - 2071946
Alignment:
Q  63 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagatta 162  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||| ||||| ||||| ||||||  ||| |  ||||||| |||  ||||||||||||    
T  2072151 tggtatagggtgctggtggcgagatatggtgaggaggcaaggaggttagaggttgggggacggagtgtttcttgctggtggagggagttagtgaagatta 2072052  T
Q  163 gggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaatggcgtgtctacttacttttggtatgacaggtggct 262  Q
    |||| ||| | ||||| |  |||||| | |||||||| ||| |||| ||||||| ||||||  ||||  |   |||||||||||||| |||||||||| |    
T  2072051 gggacggggtaggtgaggccgaggggggctggtttgcagagagggtgtcgagaaaggtaggggatggtttacatacttacttttggtctgacaggtgggt 2071952  T
Q  263 tggtga 268  Q
    ||||||    
T  2071951 tggtga 2071946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 27 - 268
Target Start/End: Original strand, 43516241 - 43516482
Alignment:
Q  27 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 126  Q
    ||||||||||  |||||||  ||||||| |||||| ||||||||||| || |||| | | |||||||||  ||| ||| |||||||||| |||||| |||    
T  43516241 tggtgttggcagatgttggcggatagaggtggtttatggtatagggtcctagtagtgcggtatggtgagacggctgggcggttggaggttgggggcagga 43516340  T
Q  127 gtacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaa 226  Q
    ||  |||||||||||||  |||||||| |||||||||||||||| | || || |  |||||| | |||||||| ||| |||| |||| ||  |||||  |    
T  43516341 gtgtttcatcttggtggcgggaagtagcgaagattagggatggggtaggcgatgtagaggggggctggtttgcagagagggtgtcgaaaaaagtaggaga 43516440  T
Q  227 tggcgtgtctacttacttttggtatgacaggtggcttggtga 268  Q
    ||||     |||||||||||||||||||| ||||||||||||    
T  43516441 tggctctagtacttacttttggtatgacaagtggcttggtga 43516482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 27 - 169
Target Start/End: Complemental strand, 9691069 - 9690927
Alignment:
Q  27 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 126  Q
    ||||||||| |  ||||||| ||||||  ||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||||    
T  9691069 tggtgttggaggttgttggtggatagatgtgggttttggtatagggtgctagtagctagatatggtgaggaggctgggaggttggaggttgggggccgga 9690970  T
Q  127 gtacttcatcttggtggaaggaagtagtgaagattagggatgg 169  Q
    ||  |||   |||||||| |||  ||| |||||||||||||||    
T  9690969 gtgtttctcattggtggagggagatagcgaagattagggatgg 9690927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 166
Target Start/End: Original strand, 56336989 - 56337132
Alignment:
Q  23 aaagtggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggc 122  Q
    |||||||||||| ||  ||||||| |||||||  ||||| ||||||||||| || |  ||||| |||||||||||||| ||| |||||||||| |||||     
T  56336989 aaagtggtgttgtcggttgttggtggatagagtaggtttgtggtatagggtactagcggcgaggtatggtgaggaggctgggcggttggaggttgggggt 56337088  T
Q  123 cggagtacttcatcttggtggaaggaagtagtgaagattaggga 166  Q
    ||||||  |||  ||||||||| |||  ||| ||||||||||||    
T  56337089 cggagtgtttctacttggtggagggagatagcgaagattaggga 56337132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 76 - 166
Target Start/End: Original strand, 52617407 - 52617497
Alignment:
Q  76 tggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattaggga 166  Q
    |||| |||||||||||||||||||||| ||||||||||||  | |||||||||  |||||||||||||| |||  ||| ||||||||||||    
T  52617407 tggtggcgagatatggtgaggaggcagagaggttggaggttagaggccggagtgtttcatcttggtggagggagatagcgaagattaggga 52617497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 170
Target Start/End: Complemental strand, 7099133 - 7098986
Alignment:
Q  23 aaagtggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggc 122  Q
    ||||| ||||||| |  |||| || ||| |||| ||||| |||||| ||||  || |||| ||||||||||||||||  | |||||||||||  ||||||    
T  7099133 aaagttgtgttggagtttgttagttgatcgagagggtttgtggtatcgggttttgatagctagatatggtgaggaggatgagaggttggaggatgggggc 7099034  T
Q  123 cggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 170  Q
    ||||||  |||   |||||||||||| || ||||||||||||||||||    
T  7099033 cggagtggttctatttggtggaaggaggttgtgaagattagggatggg 7098986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 166
Target Start/End: Complemental strand, 36183148 - 36183045
Alignment:
Q  63 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagatta 162  Q
    ||||||||||| || || || ||||||||||||||||  ||| |||||||||| ||||||||||||  |||  ||||||||| |||  ||| ||||||||    
T  36183148 tggtatagggtacttgtggcaagatatggtgaggaggatgggcggttggaggttgggggccggagtgtttctacttggtggagggagatagcgaagatta 36183049  T
Q  163 ggga 166  Q
    ||||    
T  36183048 ggga 36183045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 122
Target Start/End: Complemental strand, 38296322 - 38296258
Alignment:
Q  58 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggc 122  Q
    ||||||||||||||||| |||| |||||||||||||||| |   |||||||||||||| ||||||    
T  38296322 gtttttggtatagggtgttggtggcgagatatggtgaggtgaatgggaggttggaggttgggggc 38296258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 202
Target Start/End: Original strand, 55725199 - 55725374
Alignment:
Q  27 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 126  Q
    ||||||||| |  |||| |||||||||||||| || |||||||||||| |||| || || ||||||| |||||  ||  | |||||||  ||||||||||    
T  55725199 tggtgttggaggttgttagtagatagagatggattatggtatagggtgttggtggctaggtatggtgtggaggatggtggtttggaggatgggggccgga 55725298  T
Q  127 gtacttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcgga 202  Q
    ||  ||| |||||||||| |||  |||| | ||| || |||||||| || || | || || | |||||||||||||    
T  55725299 gttgttcttcttggtggagggagatagtcatgatcagagatgggataggcgagggtggggagggttggtttgcgga 55725374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 170
Target Start/End: Original strand, 49925835 - 49925903
Alignment:
Q  102 gggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 170  Q
    |||||||||||||| ||||||||||||  ||| |||||||||  ||| || | ||||||||||||||||    
T  49925835 gggaggttggaggttgggggccggagttgttcttcttggtggcgggaggtggggaagattagggatggg 49925903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 73
Target Start/End: Original strand, 3129482 - 3129528
Alignment:
Q  27 tggtgttggcgaatgttggtagatagagatggtttttggtatagggt 73  Q
    ||||||||||| |||||||| ||||||| |||||| |||||||||||    
T  3129482 tggtgttggcggatgttggtggatagaggtggtttgtggtatagggt 3129528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 73
Target Start/End: Original strand, 23872969 - 23873015
Alignment:
Q  27 tggtgttggcgaatgttggtagatagagatggtttttggtatagggt 73  Q
    ||||||||||| |||||||||||||||| |||||| |||||| ||||    
T  23872969 tggtgttggcggatgttggtagatagaggtggtttgtggtatcgggt 23873015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 128
Target Start/End: Complemental strand, 2365641 - 2365552
Alignment:
Q  39 atgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagt 128  Q
    ||||| || |||||||  ||||| |||||||||||| |||| ||  | ||||||||||||| |||||||||| |||  ||||| ||||||    
T  2365641 atgttagttgatagaggaggtttatggtatagggtgttggttgctcgttatggtgaggaggtagggaggttgaaggatgggggtcggagt 2365552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 148
Target Start/End: Complemental strand, 9777981 - 9777896
Alignment:
Q  63 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaagga 148  Q
    |||||||||||| |||||||| | ||| |||||||||  |||||||||  ||| ||||||||||||  ||| |  |||||||||||    
T  9777981 tggtatagggtgttggtagcgcgttatagtgaggaggatgggaggttgacggttgggggccggagtgtttctttgtggtggaagga 9777896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 29328301 - 29328358
Alignment:
Q  58 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggt 115  Q
    |||||||||||| |||  |||| ||||| |||||||||||||  ||||||||||||||    
T  29328301 gtttttggtataaggtcttggtcgcgaggtatggtgaggaggtggggaggttggaggt 29328358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 41382560 - 41382519
Alignment:
Q  87 tatggtgaggaggcagggaggttggaggtagggggccggagt 128  Q
    |||||||||||||| ||| |||||||||| ||||||||||||    
T  41382560 tatggtgaggaggctgggcggttggaggttgggggccggagt 41382519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 170
Target Start/End: Complemental strand, 19115008 - 19114940
Alignment:
Q  102 gggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 170  Q
    |||||||||||||| ||||||| ||||  ||| |||||||||  ||| |||| || |||||||||||||    
T  19115008 gggaggttggaggttgggggccagagttgttcttcttggtggcgggaggtagggaggattagggatggg 19114940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 124
Target Start/End: Original strand, 55464379 - 55464463
Alignment:
Q  40 tgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccg 124  Q
    |||| |||||||||| |||||| ||||||||||| ||||| ||  | || ||||||| |||||| |||||||  || ||||||||    
T  55464379 tgttagtagatagaggtggtttgtggtatagggtactggttgctcggtacggtgaggtggcaggtaggttggcagttgggggccg 55464463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 24 - 169
Target Start/End: Complemental strand, 6738 - 6593
Alignment:
Q  24 aagtggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggcc 123  Q
    ||||| |||||| | |||||||||||  |||  ||||| |||||||||||  | || ||||||||||||||||||||||||||||||||||| ||||||     
T  6738 aagtgatgttggaggatgttggtagagcgaggcggtttgtggtatagggttttagtggcgagatatggtgaggaggcagggaggttggaggttgggggct 6639  T
Q  124 ggagtacttcatcttggtggaaggaagtagtgaagattagggatgg 169  Q
    ||||| ||||||| |||||||  || |||| |||||||||||||||    
T  6638 ggagtgcttcatcatggtggagagaggtagcgaagattagggatgg 6593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 39 - 172
Target Start/End: Complemental strand, 25193723 - 25193590
Alignment:
Q  39 atgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatctt 138  Q
    |||||||| ||||||||||| || |||||| ||||| |||| | | | |||||||||||||| |||||||||||||||||||||||||||  ||| | ||    
T  25193723 atgttggtggatagagatgggttctggtatcgggtgttggtggtgcggtatggtgaggaggctgggaggttggaggtagggggccggagtgattcttatt 25193624  T
Q  139 ggtggaaggaagtagtgaagattagggatgggat 172  Q
    |||||| |||  ||| ||||||||||||||||||    
T  25193623 ggtggagggagatagcgaagattagggatgggat 25193590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 63 - 177
Target Start/End: Original strand, 29721439 - 29721553
Alignment:
Q  63 tggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagatta 162  Q
    |||||||||||  |||| |||||||||||||||||| | |||||||||||||||||||||||||||   || | |||||||| |||  ||| ||||||||    
T  29721439 tggtatagggttttggtggcgagatatggtgaggagcctgggaggttggaggtagggggccggagtgtctcttattggtggagggagatagcgaagatta 29721538  T
Q  163 gggatgggatgggtg 177  Q
    |||||||||| ||||    
T  29721539 gggatgggattggtg 29721553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 166
Target Start/End: Complemental strand, 15439764 - 15439632
Alignment:
Q  27 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 126  Q
    ||||||||||  ||||||||  ||||||||||||| |||||||||||| |||  |||   |||||||||||||||||||||||       ||||||||||    
T  15439764 tggtgttggcagatgttggtgaatagagatggtttatggtatagggtgttgggggcgcagtatggtgaggaggcagggaggtt-------gggggccgga 15439672  T
Q  127 gtacttcatcttggtggaaggaagtagtgaagattaggga 166  Q
    |   ||| | ||||||||||||||||||||||||||||||    
T  15439671 gcggttctttttggtggaaggaagtagtgaagattaggga 15439632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 166
Target Start/End: Complemental strand, 15531068 - 15530936
Alignment:
Q  27 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 126  Q
    ||||||||||  ||||||||  ||||||||||||| |||||||||||| |||  |||   |||||||||||||||||||||||       ||||||||||    
T  15531068 tggtgttggcagatgttggtgaatagagatggtttatggtatagggtgttgggggcgcagtatggtgaggaggcagggaggtt-------gggggccgga 15530976  T
Q  127 gtacttcatcttggtggaaggaagtagtgaagattaggga 166  Q
    |   ||| | ||||||||||||||||||||||||||||||    
T  15530975 gcggttctttttggtggaaggaagtagtgaagattaggga 15530936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 170
Target Start/End: Complemental strand, 6245727 - 6245593
Alignment:
Q  29 gtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagt 128  Q
    ||||||||| |||||||| ||||||| |||  | ||||||||||| || |||||  | ||||||||| |||| ||||||||||       ||||||||||    
T  6245727 gtgttggcggatgttggtggatagaggtgggctctggtatagggttcttgtagcatgttatggtgagaaggctgggaggttgg-------gggccggagt 6245635  T
Q  129 acttcatcttggtggaaggaagtagtgaagattagggatggg 170  Q
      |||||||||||||  |||||||||||||||||||||||||    
T  6245634 gtttcatcttggtggcgggaagtagtgaagattagggatggg 6245593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 166
Target Start/End: Original strand, 37165610 - 37165753
Alignment:
Q  23 aaagtggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggc 122  Q
    |||||| |||||| | ||||| || |||||||  || || ||||||||||| ||||| ||||||||||| |||||||  ||| |||||||||| ||||||    
T  37165610 aaagtgatgttggaggatgttagtggatagaggaggcttgtggtatagggtactggtggcgagatatggcgaggaggatgggcggttggaggttgggggc 37165709  T
Q  123 cggagtacttcatcttggtggaaggaagtagtgaagattaggga 166  Q
    ||||||  |||  ||||||||| |||  ||| ||||||||||||    
T  37165710 cggagtgtttctacttggtggagggagatagcgaagattaggga 37165753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 27 - 169
Target Start/End: Complemental strand, 36025168 - 36025026
Alignment:
Q  27 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 126  Q
    ||||||||||| |||||||| |||||||  || || |||||||| ||  |||| |||||||||||||||||||| ||| |||||||||| |||| |||||    
T  36025168 tggtgttggcggatgttggtggatagaggagggttatggtatagagttttggtggcgagatatggtgaggaggctgggcggttggaggttggggaccgga 36025069  T
Q  127 gtacttcatcttggtggaaggaagtagtgaagattagggatgg 169  Q
    ||  |||  ||| |||||  ||  ||| |||||||||||||||    
T  36025068 gtgtttccactttgtggagagagttagcgaagattagggatgg 36025026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 169
Target Start/End: Complemental strand, 12341218 - 12341072
Alignment:
Q  23 aaagtggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggc 122  Q
    ||||||||||||| | ||||| || |||||||  || || |||| |||||| ||||| ||||| |||||||||||||| ||| |||||||||| ||| ||    
T  12341218 aaagtggtgttggaggatgttagtggatagaggagggttgtggtttagggtactggtggcgaggtatggtgaggaggctgggcggttggaggttgggagc 12341119  T
Q  123 cggagtacttcatcttggtggaaggaagtagtgaagattagggatgg 169  Q
    ||||||  |||   |||||||| | |  ||| |||||||||||||||    
T  12341118 cggagtgtttctaattggtggaggtagatagcgaagattagggatgg 12341072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 148
Target Start/End: Complemental strand, 18187793 - 18187672
Alignment:
Q  27 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccgga 126  Q
    ||||||||| || |||| |||||||||| |||||| |||||||||| |||||| |   ||||||||||||||| |||| ||||||  || | ||||||||    
T  18187793 tggtgttggagattgttagtagatagaggtggtttgtggtatagggagctggttgattgatatggtgaggaggtagggcggttggcagttgagggccgga 18187694  T
Q  127 gtacttcatcttggtggaagga 148  Q
    ||  ||| |  |||||||||||    
T  18187693 gtggttctttgtggtggaagga 18187672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 127
Target Start/End: Complemental strand, 36492997 - 36492928
Alignment:
Q  58 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggag 127  Q
    |||| |||||||||||| |||| ||||| |||||||||||||  |||||||||| ||| |||||||||||    
T  36492997 gtttatggtatagggtgttggtggcgaggtatggtgaggaggatgggaggttggcggttgggggccggag 36492928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 12332461 - 12332411
Alignment:
Q  61 tttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttgg 111  Q
    |||||||||||||| |||| |||||||||||||||||||  ||||||||||    
T  12332461 tttggtatagggtgttggtggcgagatatggtgaggaggatgggaggttgg 12332411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 170
Target Start/End: Complemental strand, 6901481 - 6901413
Alignment:
Q  102 gggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 170  Q
    |||||||||||||| |||||||| |||  ||| ||||||||| ||||||||| || |||| | ||||||    
T  6901481 gggaggttggaggttgggggccgaagtggttcttcttggtggcaggaagtagggaggattcgtgatggg 6901413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 17659403 - 17659339
Alignment:
Q  102 gggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattaggga 166  Q
    |||||||||||||| ||||||||||||  ||| |||||||||| ||| |||| |  |||||||||    
T  17659403 gggaggttggaggttgggggccggagttgttcttcttggtggagggaggtagggcggattaggga 17659339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 170
Target Start/End: Complemental strand, 36157726 - 36157658
Alignment:
Q  102 gggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 170  Q
    |||||||||||||| ||||||||||||  ||| |||||||||| ||| || | || |||||| ||||||    
T  36157726 gggaggttggaggttgggggccggagttgttcttcttggtggagggaggtggcgaggattagagatggg 36157658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 111
Target Start/End: Original strand, 63792 - 63876
Alignment:
Q  27 tggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttgg 111  Q
    ||||||||||| |||||| | || | ||||  |||||||||||| ||| |||| |||||||||| ||||||||||||||||||||    
T  63792 tggtgttggcggatgttgatggacaaagataatttttggtatagagtgttggtggcgagatatgatgaggaggcagggaggttgg 63876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 143
Target Start/End: Complemental strand, 67694 - 67611
Alignment:
Q  60 ttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtgg 143  Q
    ||||||||||||||| || |  | || ||||||||||||||||||||||||||||| |||||| |||||  ||| |||||||||    
T  67694 ttttggtatagggtgttgatttctaggtatggtgaggaggcagggaggttggaggttgggggctggagtggttcttcttggtgg 67611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 128
Target Start/End: Complemental strand, 55278 - 55208
Alignment:
Q  58 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagt 128  Q
    |||| |||||||||||| |||| ||||||||||| |||||||  | |||||||||||| ||||||||||||    
T  55278 gtttatggtatagggtgttggtggcgagatatggcgaggaggatgagaggttggaggttgggggccggagt 55208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 128
Target Start/End: Original strand, 143356 - 143426
Alignment:
Q  58 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagt 128  Q
    |||| |||||||||||| |||| ||||||||||| |||||||  | |||||||||||| ||||||||||||    
T  143356 gtttatggtatagggtgttggtggcgagatatggcgaggaggatgagaggttggaggttgggggccggagt 143426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 73
Target Start/End: Original strand, 4049 - 4095
Alignment:
Q  27 tggtgttggcgaatgttggtagatagagatggtttttggtatagggt 73  Q
    ||||||||||| |||||||| |||||||||||||| |||||||||||    
T  4049 tggtgttggcggatgttggtggatagagatggtttgtggtatagggt 4095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 73
Target Start/End: Original strand, 134347 - 134393
Alignment:
Q  27 tggtgttggcgaatgttggtagatagagatggtttttggtatagggt 73  Q
    ||||||||||| |||||||| |||||||||||||| |||||||||||    
T  134347 tggtgttggcggatgttggtggatagagatggtttgtggtatagggt 134393  T

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Target: scaffold0002 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 73
Target Start/End: Original strand, 312174 - 312220
Alignment:
Q  27 tggtgttggcgaatgttggtagatagagatggtttttggtatagggt 73  Q
    ||||||||||| |||||||| |||||||||||||| |||||||||||    
T  312174 tggtgttggcggatgttggtggatagagatggtttgtggtatagggt 312220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 73
Target Start/End: Original strand, 327628 - 327674
Alignment:
Q  27 tggtgttggcgaatgttggtagatagagatggtttttggtatagggt 73  Q
    ||||||||||| |||||||| |||||||||||||| |||||||||||    
T  327628 tggtgttggcggatgttggtggatagagatggtttgtggtatagggt 327674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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