View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0134_1D_high_20 (Length: 224)

Name: NF0134_1D_high_20
Description: NF0134_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0134_1D_high_20
NF0134_1D_high_20
[»] chr4 (11 HSPs)
chr4 (18-209)||(28948426-28948610)
chr4 (17-209)||(22703070-22703255)
chr4 (17-209)||(22990862-22991047)
chr4 (82-204)||(22698733-22698848)
chr4 (82-204)||(22981682-22981797)
chr4 (82-204)||(22995269-22995384)
chr4 (78-161)||(56560508-56560591)
chr4 (78-161)||(24036214-24036297)
chr4 (78-162)||(16565539-16565623)
chr4 (78-162)||(15618844-15618928)
chr4 (112-157)||(52056997-52057042)
[»] scaffold0009 (1 HSPs)
scaffold0009 (17-209)||(200042-200227)
[»] chr8 (6 HSPs)
chr8 (82-204)||(19648194-19648309)
chr8 (78-161)||(193387-193470)
chr8 (78-161)||(720991-721074)
chr8 (78-161)||(882098-882181)
chr8 (78-161)||(30983223-30983306)
chr8 (78-161)||(44240122-44240205)
[»] chr1 (6 HSPs)
chr1 (82-204)||(4345989-4346104)
chr1 (78-161)||(46407488-46407571)
chr1 (78-161)||(50978939-50979022)
chr1 (85-161)||(35606336-35606412)
chr1 (78-162)||(35569906-35569990)
chr1 (120-160)||(50979027-50979067)
[»] chr5 (4 HSPs)
chr5 (82-204)||(22809984-22810099)
chr5 (78-161)||(33232457-33232540)
chr5 (78-161)||(7072032-7072115)
chr5 (78-162)||(22481515-22481599)
[»] chr3 (4 HSPs)
chr3 (82-200)||(7011653-7011764)
chr3 (78-161)||(51125383-51125466)
chr3 (78-161)||(52692542-52692625)
chr3 (105-162)||(16246819-16246876)
[»] chr2 (6 HSPs)
chr2 (82-204)||(23360942-23361058)
chr2 (78-161)||(13895999-13896082)
chr2 (78-161)||(14036616-14036699)
chr2 (78-161)||(14380107-14380190)
chr2 (78-162)||(5916944-5917028)
chr2 (78-162)||(36311597-36311681)
[»] chr6 (4 HSPs)
chr6 (78-161)||(21515703-21515786)
chr6 (78-161)||(30019220-30019303)
chr6 (78-162)||(16547456-16547540)
chr6 (85-163)||(17830767-17830845)
[»] chr7 (3 HSPs)
chr7 (78-163)||(37638703-37638788)
chr7 (78-163)||(10372714-10372799)
chr7 (117-162)||(12963342-12963387)
[»] scaffold0394 (1 HSPs)
scaffold0394 (85-156)||(6607-6678)


Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 28948610 - 28948426
Alignment:
Q  18 acatcagttgggcaaacatgtttaaggtgcactcaagtttcaatatttcatcgtcttcagtaatgaggtatttaattattatcacttaagtgtaaggtgc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||| ||||||||    
T  28948610 acatcagttgggcaaacatgtttaaggtgcactcaagtttcaatatttcatcgtcttcaataatgaggtattcaattattatcactcaagtttaaggtgc 28948511  T
Q  118 acaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatgcctaaattcacaattaagacacaggttc 209  Q
    |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  28948510 acaatagaaagaacttttggtgtatggaagaatagatttgc-------aattctacgacgcatgcctaaattcacaattaagacacaggttc 28948426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 22703255 - 22703070
Alignment:
Q  17 gacatcagttgggcaaacatgtttaaggtgcactcaagtttcaatatttcatcgtcttcagtaatgaggtatttaattattatcacttaagtgtaaggtg 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||| |||||||    
T  22703255 gacatcagttgggcaaacatgtttaaggtgcactcaagtttcaatatttcatcgtcttcaataatgaggtattcaattattatcactcaagtttaaggtg 22703156  T
Q  117 cacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatgcctaaattcacaattaagacacaggttc 209  Q
    | ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||| |||||||||||    
T  22703155 cccaatagaaagaacttttggtgtatggaagaatagatttgc-------aattctacgacgcatgcctaaattcacaattatgacacaggttc 22703070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 22990862 - 22991047
Alignment:
Q  17 gacatcagttgggcaaacatgtttaaggtgcactcaagtttcaatatttcatcgtcttcagtaatgaggtatttaattattatcacttaagtgtaaggtg 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||| |||||||    
T  22990862 gacatcagttgggcaaacatgtttaaggtgcactcaagtttcaatatttcatcgtcttcaataatgaggtattcaattattatcactcaagtttaaggtg 22990961  T
Q  117 cacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatgcctaaattcacaattaagacacaggttc 209  Q
    | ||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  22990962 cccaatagaaagaacttttggtgtatggaagaatag-------atttgcaattctacgacgcatgcctaaattcacaattatgacacaggttc 22991047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 82 - 204
Target Start/End: Original strand, 22698733 - 22698848
Alignment:
Q  82 gaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatg 181  Q
    |||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  22698733 gaggtattcaattattatcactcaagtttaaggtgcacaatagaaagaacttttggtgtatggaagaatag-------atttgcaattctacgacgcatg 22698825  T
Q  182 cctaaattcacaattaagacaca 204  Q
    |||||||||||||||||||||||    
T  22698826 cctaaattcacaattaagacaca 22698848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 82 - 204
Target Start/End: Complemental strand, 22981797 - 22981682
Alignment:
Q  82 gaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatg 181  Q
    |||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  22981797 gaggtattcaattattatcactcaagtttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgc-------aattctacgacgcatg 22981705  T
Q  182 cctaaattcacaattaagacaca 204  Q
    |||||||||||||||||||||||    
T  22981704 cctaaattcacaattaagacaca 22981682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 82 - 204
Target Start/End: Complemental strand, 22995384 - 22995269
Alignment:
Q  82 gaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatg 181  Q
    |||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  22995384 gaggtattcaattattatcactcaagtttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgc-------aattctacgacgcatg 22995292  T
Q  182 cctaaattcacaattaagacaca 204  Q
    |||||||||||||||||||||||    
T  22995291 cctaaattcacaattaagacaca 22995269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 78 - 161
Target Start/End: Original strand, 56560508 - 56560591
Alignment:
Q  78 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 161  Q
    |||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  56560508 taatgaagtatttaattattatcactcaagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 56560591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 78 - 161
Target Start/End: Complemental strand, 24036297 - 24036214
Alignment:
Q  78 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 161  Q
    |||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  24036297 taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 24036214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 78 - 162
Target Start/End: Original strand, 16565539 - 16565623
Alignment:
Q  78 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatt 162  Q
    |||||| ||| | ||||| ||||||| |||| |||| |||||||| |||||||||||||| ||||||||||||||||||||||||    
T  16565539 taatgaagtaatcaattactatcactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagatttgcaatt 16565623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 78 - 162
Target Start/End: Original strand, 15618844 - 15618928
Alignment:
Q  78 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatt 162  Q
    |||||| ||||| ||||| ||||||| |||| || | |||||||| |||| ||||||||| ||||||||||||||||||||||||    
T  15618844 taatgaagtattcaattactatcactcaagtttaggatgcacaattgaaaaaacttttggggtatggaagaatagatttgcaatt 15618928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 157
Target Start/End: Complemental strand, 52057042 - 52056997
Alignment:
Q  112 aggtgcacaatagaaagaacttttggtgtatggaagaatagatttg 157  Q
    |||||||||||||||| ||||||| | ||||||||||| |||||||    
T  52057042 aggtgcacaatagaaataacttttagggtatggaagaacagatttg 52056997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 200227 - 200042
Alignment:
Q  17 gacatcagttgggcaaacatgtttaaggtgcactcaagtttcaatatttcatcgtcttcagtaatgaggtatttaattattatcacttaagtgtaaggtg 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||| |||||||    
T  200227 gacatcagttgggcaaacatgtttaaggtgcactcaagtttcaatatttcatcgtcttcaataatgaggtattcaattattatcactcaagtttaaggtg 200128  T
Q  117 cacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatgcctaaattcacaattaagacacaggttc 209  Q
    | ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||| |||||||||||    
T  200127 cccaatagaaagaacttttggtgtatggaagaatagatttgc-------aattctacgacgcatgcctaaattcacaattatgacacaggttc 200042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 82 - 204
Target Start/End: Original strand, 19648194 - 19648309
Alignment:
Q  82 gaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatg 181  Q
    |||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  19648194 gaggtattcaattattatcactcaagtttaaggtgcacaatagaaagaacttttggtgtatggaagaatag-------atttgcaattctacgacgcatg 19648286  T
Q  182 cctaaattcacaattaagacaca 204  Q
    |||||||||||||||||||||||    
T  19648287 cctaaattcacaattaagacaca 19648309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 78 - 161
Target Start/End: Original strand, 193387 - 193470
Alignment:
Q  78 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 161  Q
    |||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  193387 taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 193470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 78 - 161
Target Start/End: Original strand, 720991 - 721074
Alignment:
Q  78 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 161  Q
    |||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  720991 taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 721074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 78 - 161
Target Start/End: Original strand, 882098 - 882181
Alignment:
Q  78 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 161  Q
    |||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  882098 taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 882181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 78 - 161
Target Start/End: Complemental strand, 30983306 - 30983223
Alignment:
Q  78 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 161  Q
    |||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  30983306 taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 30983223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 78 - 161
Target Start/End: Original strand, 44240122 - 44240205
Alignment:
Q  78 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 161  Q
    |||||| ||||||||||||||||||| |||| |||| | ||||||||||||||||||||| ||||||||||| | |||||||||    
T  44240122 taatgaagtatttaattattatcactcaagtttaagatacacaatagaaagaacttttggggtatggaagaacatatttgcaat 44240205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 82 - 204
Target Start/End: Original strand, 4345989 - 4346104
Alignment:
Q  82 gaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatg 181  Q
    |||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  4345989 gaggtattcaattattatcactcaagtttaaggtgcacaatagaaagaacttttggtgtatggaagaatag-------atttgcaattctacgacgcatg 4346081  T
Q  182 cctaaattcacaattaagacaca 204  Q
    |||||||||||||||||||||||    
T  4346082 cctaaattcacaattaagacaca 4346104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 78 - 161
Target Start/End: Original strand, 46407488 - 46407571
Alignment:
Q  78 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 161  Q
    |||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  46407488 taatgaagtatttaattattatcactcaagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 46407571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 78 - 161
Target Start/End: Complemental strand, 50979022 - 50978939
Alignment:
Q  78 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 161  Q
    |||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  50979022 taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 50978939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 35606336 - 35606412
Alignment:
Q  85 gtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 161  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||| |||| ||||||||||| |||||||||||    
T  35606336 gtatttaattattatcactcaagtttaaggtgcacaatagaaagaactgttggggtatggaagaacagatttgcaat 35606412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 78 - 162
Target Start/End: Complemental strand, 35569990 - 35569906
Alignment:
Q  78 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatt 162  Q
    |||||| ||||| ||||| ||||||| |||| |||| |||||||| |||||||||||||| ||||||||||||| ||||||||||    
T  35569990 taatgaagtattcaattactatcactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaataaatttgcaatt 35569906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 160
Target Start/End: Complemental strand, 50979067 - 50979027
Alignment:
Q  120 aatagaaagaacttttggtgtatggaagaatagatttgcaa 160  Q
    |||||||||||||||||| ||||||||||| ||||||||||    
T  50979067 aatagaaagaacttttggggtatggaagaacagatttgcaa 50979027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 82 - 204
Target Start/End: Original strand, 22809984 - 22810099
Alignment:
Q  82 gaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatg 181  Q
    |||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  22809984 gaggtattcaattattatcactcaagtttaaggtgcacaatagaaagaacttttggtgtatggaagaatag-------atttgcaattctacgacgcatg 22810076  T
Q  182 cctaaattcacaattaagacaca 204  Q
     ||||||||||||||||||||||    
T  22810077 actaaattcacaattaagacaca 22810099  T

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Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 78 - 161
Target Start/End: Original strand, 33232457 - 33232540
Alignment:
Q  78 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 161  Q
    |||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  33232457 taatgaagtatttaattattatcactcaagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 33232540  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 78 - 161
Target Start/End: Complemental strand, 7072115 - 7072032
Alignment:
Q  78 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 161  Q
    |||||| ||||||||||||||||||| || | |||||||||||||||||||||||||||| ||||||||||| | |||||||||    
T  7072115 taatgaagtatttaattattatcactcaaatttaaggtgcacaatagaaagaacttttggggtatggaagaacatatttgcaat 7072032  T

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Target: chr5; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 78 - 162
Target Start/End: Original strand, 22481515 - 22481599
Alignment:
Q  78 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatt 162  Q
    |||||| ||||| ||||| ||||||| |||| |||| |||||||| |||||||||||||| ||||||||||||||||||||||||    
T  22481515 taatgaagtattcaattactatcactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagatttgcaatt 22481599  T

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Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 82 - 200
Target Start/End: Original strand, 7011653 - 7011764
Alignment:
Q  82 gaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatg 181  Q
    |||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  7011653 gaggtattcaattattatcactcaagtttaaggtgcacaatagaaagaacttttggtgtatggaagaatag-------atttgcaattctacgacgcatg 7011745  T
Q  182 cctaaattcacaattaaga 200  Q
    |||||||||||||||||||    
T  7011746 cctaaattcacaattaaga 7011764  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 78 - 161
Target Start/End: Complemental strand, 51125466 - 51125383
Alignment:
Q  78 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 161  Q
    |||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  51125466 taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 51125383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 78 - 161
Target Start/End: Original strand, 52692542 - 52692625
Alignment:
Q  78 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 161  Q
    |||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  52692542 taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 52692625  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 162
Target Start/End: Complemental strand, 16246876 - 16246819
Alignment:
Q  105 aagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatt 162  Q
    |||| |||| |||||||| ||||||||||||   | ||||||||||||||||||||||    
T  16246876 aagtttaagatgcacaattgaaagaacttttaaggcatggaagaatagatttgcaatt 16246819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 82 - 204
Target Start/End: Complemental strand, 23361058 - 23360942
Alignment:
Q  82 gaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaac-ttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcat 180  Q
    |||||||| ||||||||||||| |||| |||||||||||||||||||||| |||||||||||| ||||||||       |||||||||||||||||||||    
T  23361058 gaggtattcaattattatcactcaagtttaaggtgcacaatagaaagaactttttggtgtatgaaagaatag-------atttgcaattctacgacgcat 23360966  T
Q  181 gcctaaattcacaattaagacaca 204  Q
    | ||||||||||||||||||||||    
T  23360965 gactaaattcacaattaagacaca 23360942  T

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Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 78 - 161
Target Start/End: Original strand, 13895999 - 13896082
Alignment:
Q  78 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 161  Q
    |||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  13895999 taatgaagtatttaattattatcactcaagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 13896082  T

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Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 78 - 161
Target Start/End: Original strand, 14036616 - 14036699
Alignment:
Q  78 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 161  Q
    |||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  14036616 taatgaagtatttaattattatcactcaagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 14036699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 78 - 161
Target Start/End: Original strand, 14380107 - 14380190
Alignment:
Q  78 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 161  Q
    |||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  14380107 taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 14380190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 78 - 162
Target Start/End: Complemental strand, 5917028 - 5916944
Alignment:
Q  78 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatt 162  Q
    |||||| ||||| ||||| ||||||| |||| |||| |||||||| |||||||||||||| ||||||||||||||||||||||||    
T  5917028 taatgaagtattcaattactatcactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagatttgcaatt 5916944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 78 - 162
Target Start/End: Original strand, 36311597 - 36311681
Alignment:
Q  78 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatt 162  Q
    |||||| ||||| ||||| ||||||| |||| |||| |||||||| |||||||||||||| ||||||||||||||||||||||||    
T  36311597 taatgaagtattcaattactatcactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagatttgcaatt 36311681  T

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Target: chr6 (Bit Score: 60; Significance: 9e-26; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 78 - 161
Target Start/End: Complemental strand, 21515786 - 21515703
Alignment:
Q  78 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 161  Q
    |||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| | |||||||||    
T  21515786 taatgaagtatttaattattatcactcaagtttaaggtgcacaatagaaagaacttttggggtatggaagaacatatttgcaat 21515703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 78 - 161
Target Start/End: Original strand, 30019220 - 30019303
Alignment:
Q  78 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 161  Q
    |||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||||| | |||||||||    
T  30019220 taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacatatttgcaat 30019303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 78 - 162
Target Start/End: Original strand, 16547456 - 16547540
Alignment:
Q  78 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatt 162  Q
    |||||| ||||| ||||| ||||||| |||| |||| |||||||| |||||||||||||| ||||||||||||||||||||||||    
T  16547456 taatgaagtattcaattactatcactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagatttgcaatt 16547540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 85 - 163
Target Start/End: Complemental strand, 17830845 - 17830767
Alignment:
Q  85 gtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattt 163  Q
    ||||| ||||| || |||| |||| |||| |||||||| |||||||||||||| |||||||||||||||||||||||||    
T  17830845 gtattcaattactaccactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagatttgcaattt 17830767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 1e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 78 - 163
Target Start/End: Original strand, 37638703 - 37638788
Alignment:
Q  78 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattt 163  Q
    |||||| ||||| ||||| ||||||| |||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  37638703 taatgaagtattcaattactatcactcaagtttaagatgcacaattgaaagaacttttggtgtatggaagaatagatttgcaattt 37638788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 78 - 163
Target Start/End: Complemental strand, 10372799 - 10372714
Alignment:
Q  78 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattt 163  Q
    |||||| |||||  |||| || |||| |||| |||| |||||||| |||||||||||||| |||||||||||||||||||||||||    
T  10372799 taatgaagtattcgattactaccactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagatttgcaattt 10372714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 162
Target Start/End: Original strand, 12963342 - 12963387
Alignment:
Q  117 cacaatagaaagaacttttggtgtatggaagaatagatttgcaatt 162  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||    
T  12963342 cacaattgaaagaacttttggggtatggaagaatagatttgcaatt 12963387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 85 - 156
Target Start/End: Complemental strand, 6678 - 6607
Alignment:
Q  85 gtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagattt 156  Q
    ||||| ||||| || |||| |||| |||| |||||||| |||||||||||||| ||||||||||||||||||    
T  6678 gtattcaattactaccactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagattt 6607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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