View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0134_1D_high_24 (Length: 215)
Name: NF0134_1D_high_24
Description: NF0134_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0134_1D_high_24 |
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Alignment Details
Target: chr8 (Bit Score: 149; Significance: 7e-79; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 28901162 - 28900990
Alignment:
| Q |
1 |
attcgcacctcaatggatgccttaagcacctggccatgcaccgtttgtgcatgaggcagtgtttctactgcctcaggagttattagctcctatgtaggct |
100 |
Q |
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| T |
28901162 |
attcgcacctcaatggatgccttaagcacctggccatgcaccatttgtgcatgaggcagtgtttctactgcctcaggagttattagctcccatgtaggct |
28901063 |
T |
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| Q |
101 |
ccatatgcgcctgactgcgggaaaaaattgcttgcagcttgttttccaacttggatcggtgcaaaaagcccaa |
173 |
Q |
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| T |
28901062 |
ccatatgcgcctgactgggggcaaaaattacctgcagcttgttttccaacttggatcggtgcaaaaagcccaa |
28900990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 13304811 - 13304847
Alignment:
| Q |
137 |
gcttgttttccaacttggatcggtgcaaaaagcccaa |
173 |
Q |
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| T |
13304811 |
gcttgttttcaaagttggatcggtgcaaaaagcccaa |
13304847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 173
Target Start/End: Original strand, 22219031 - 22219169
Alignment:
| Q |
35 |
catgcaccgtttgtgcatgaggcagtgtttctactgcctcaggagttattagctcctatgtaggctccatatgcgcctgactgcgggaaaaaattgcttg |
134 |
Q |
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| T |
22219031 |
catgcactatttgcgcaggaggcactgttgctactgcctcatgcgctatatgcgcccctgtaggctccatttgtgcttgactgcaggaagaaattgtttg |
22219130 |
T |
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| Q |
135 |
cagcttgttttccaacttggatcggtgcaaaaagcccaa |
173 |
Q |
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| T |
22219131 |
caacttgttttccaagttgaatcgttgcaaaaagtccaa |
22219169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 168
Target Start/End: Complemental strand, 47024553 - 47024423
Alignment:
| Q |
38 |
gcaccgtttgtgcatgaggcagtgtttctactgcctcaggagttattagctcctatgtaggctccatatgcgcctgactgcgggaaaaaattgcttgcag |
137 |
Q |
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| T |
47024553 |
gcaccatttgcgcatgaggctgtgttgctacttcctaatgcgatatttgcacccctgcaggcgccatatgtgcctagttgcgggcataaattgcctgcag |
47024454 |
T |
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| Q |
138 |
cttgttttccaacttggatcggtgcaaaaag |
168 |
Q |
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| T |
47024453 |
cttgttttccaaactggatcggtgcgaaaag |
47024423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 23521407 - 23521371
Alignment:
| Q |
137 |
gcttgttttccaacttggatcggtgcaaaaagcccaa |
173 |
Q |
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| T |
23521407 |
gcttgttttccaagttggatcggtgcaaaaagcccaa |
23521371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 167
Target Start/End: Original strand, 9353359 - 9353401
Alignment:
| Q |
125 |
aaattgcttgcagcttgttttccaacttggatcggtgcaaaaa |
167 |
Q |
| |
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| T |
9353359 |
aaatttcttgcagcttgtttttcaagttggatcggtgcaaaaa |
9353401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 24842109 - 24842145
Alignment:
| Q |
133 |
tgcagcttgttttccaacttggatcggtgcaaaaagc |
169 |
Q |
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| T |
24842109 |
tgcagcttgttttccaagctggatcggtgcaaaaagc |
24842145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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