View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0134_1D_high_4 (Length: 497)
Name: NF0134_1D_high_4
Description: NF0134_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0134_1D_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 11 - 482
Target Start/End: Complemental strand, 23333847 - 23333376
Alignment:
| Q |
11 |
ggacatcacgaagttgaccgataaaattgtgtgccagaatgcagctgaagcagtactcccccaaagaggttgataagtttgttttatgtaattttttgct |
110 |
Q |
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|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
23333847 |
ggacataacgaagttgaccgataaaattgtgtgccggaatgcagctgaagcagtactccccccaagaggttgataagtttgttttatgtaattttttgct |
23333748 |
T |
|
| Q |
111 |
gttttgatatattgtgtcatgatttaccaggaaaaatgtacacattgtcgttacctcaggaactgttgttcgtgttgctgatgagctttcccttcaagag |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23333747 |
gttttgatatattgtgtcatgatttaccaggaaaaatgtacacattgtcgttgcctcaggaactgttgttcgtgttgctgatgagctttcccttcaagag |
23333648 |
T |
|
| Q |
211 |
atgcgattgctgaatacatattatgcagagcttgagaccgcaactgtaagtgattttttatatgtcaactgctttctgatgaaacaatcattataatatg |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
23333647 |
atgcgattgctgaatacatattatgcagagcttgagaccgcaactgtaagtgattttttatatgtcaactgctttctgatggaacaatcattataatatg |
23333548 |
T |
|
| Q |
311 |
ctgaattacgttggacaaaatccctaattcaaatgatttcgttggcttgcttaatgtcgtcattacgaagatgcgcacgacagggcataagataaattgc |
410 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
23333547 |
ctgacttacgttggacaaaatccctaattcaaatgatttcgttggcttgcttaatgtcgtcattacgaagatgcgcacgatggggcataagataaattgc |
23333448 |
T |
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| Q |
411 |
gaacattttaggagtttgcctctagctatgtgtaatactcccaaaaagtataacaaatttgcaaccagtgtg |
482 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
23333447 |
gaacattttaggagtttgcctctagctatgtgtaatactcccaaaaggtataacaaatttgcaaccagtgtg |
23333376 |
T |
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