View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0134_1D_high_9 (Length: 330)
Name: NF0134_1D_high_9
Description: NF0134_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0134_1D_high_9
Alignment Details
Target: chr8 (Bit Score: 176; Significance: 9e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 15 - 317
Target Start/End: Original strand, 12171126 - 12171428
Alignment:
Q
15
tacttttcttagttcaaagttaaaaatttctctgaaaa--gagtgtata-taaattaatattgtcatgtgattgtgtggagactgtattcttctcatttt
111
Q
|||||||||| |||||||||||||||||| |||||||| ||||||||| ||| |||| || || |||| ||| ||||||||| | | ||||||||||
T
12171126
tacttttcttggttcaaagttaaaaatttgtctgaaaattgagtgtataataacttaaaat-gtaatgt-att---tggagactggaattttctcatttt
12171220
T
Q
112
ctttgtcggaaatgcagaatgcctatggaacactgcatggaggcgcggttggttccttggttgaagttctgtcaactgcttgtgctggaactgtagttac
211
Q
||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||| ||||||||||| |
T
12171221
ctttgtcggaattgcagaatgcctatggaacactgcatggaggcgctgttgggtccttagttgaagttctgtcaactgcttgtgctagaactgtagttgc
12171320
T
Q
212
cgaggacaaggaacattttcttggggaaattagcatttcttac--ctctggcactccaataaatgtgagttcttgttttcactggtgattctttcctatg
309
Q
||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
T
12171321
tgaggacaaggaactttttcttggggaaattagcatttcttacctctctggcactccaataaatgtgagttcttattttcactggtgattatttcctatg
12171420
T
Q
310
atgtccat
317
Q
||||||||
T
12171421
atgtccat
12171428
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 15 - 317
Target Start/End: Original strand, 12415554 - 12415856
Alignment:
Q
15
tacttttcttagttcaaagttaaaaatttctctgaaaa--gagtgtata-taaattaatattgtcatgtgattgtgtggagactgtattcttctcatttt
111
Q
|||||||||| |||||||||||||||||| |||||||| ||||||||| ||| |||| || || |||| ||| ||||||||| | | ||||||||||
T
12415554
tacttttcttggttcaaagttaaaaatttgtctgaaaattgagtgtataataacttaaaat-gtaatgt-att---tggagactggaattttctcatttt
12415648
T
Q
112
ctttgtcggaaatgcagaatgcctatggaacactgcatggaggcgcggttggttccttggttgaagttctgtcaactgcttgtgctggaactgtagttac
211
Q
||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||| ||||||||||| |
T
12415649
ctttgtcggaattgcagaatgcctatggaacactgcatggaggcgctgttgggtccttagttgaagttctgtcaactgcttgtgctagaactgtagttgc
12415748
T
Q
212
cgaggacaaggaacattttcttggggaaattagcatttcttac--ctctggcactccaataaatgtgagttcttgttttcactggtgattctttcctatg
309
Q
||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
T
12415749
tgaggacaaggaactttttcttggggaaattagcatttcttacctctctggcactccaataaatgtgagttcttattttcactggtgattatttcctatg
12415848
T
Q
310
atgtccat
317
Q
||||||||
T
12415849
atgtccat
12415856
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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