View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0134_1D_low_10 (Length: 330)
Name: NF0134_1D_low_10
Description: NF0134_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0134_1D_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 9e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 15 - 317
Target Start/End: Original strand, 12171126 - 12171428
Alignment:
| Q |
15 |
tacttttcttagttcaaagttaaaaatttctctgaaaa--gagtgtata-taaattaatattgtcatgtgattgtgtggagactgtattcttctcatttt |
111 |
Q |
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| T |
12171126 |
tacttttcttggttcaaagttaaaaatttgtctgaaaattgagtgtataataacttaaaat-gtaatgt-att---tggagactggaattttctcatttt |
12171220 |
T |
|
| Q |
112 |
ctttgtcggaaatgcagaatgcctatggaacactgcatggaggcgcggttggttccttggttgaagttctgtcaactgcttgtgctggaactgtagttac |
211 |
Q |
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| T |
12171221 |
ctttgtcggaattgcagaatgcctatggaacactgcatggaggcgctgttgggtccttagttgaagttctgtcaactgcttgtgctagaactgtagttgc |
12171320 |
T |
|
| Q |
212 |
cgaggacaaggaacattttcttggggaaattagcatttcttac--ctctggcactccaataaatgtgagttcttgttttcactggtgattctttcctatg |
309 |
Q |
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||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
12171321 |
tgaggacaaggaactttttcttggggaaattagcatttcttacctctctggcactccaataaatgtgagttcttattttcactggtgattatttcctatg |
12171420 |
T |
|
| Q |
310 |
atgtccat |
317 |
Q |
| |
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|||||||| |
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| T |
12171421 |
atgtccat |
12171428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 15 - 317
Target Start/End: Original strand, 12415554 - 12415856
Alignment:
| Q |
15 |
tacttttcttagttcaaagttaaaaatttctctgaaaa--gagtgtata-taaattaatattgtcatgtgattgtgtggagactgtattcttctcatttt |
111 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||| ||||||||| ||| |||| || || |||| ||| ||||||||| | | |||||||||| |
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| T |
12415554 |
tacttttcttggttcaaagttaaaaatttgtctgaaaattgagtgtataataacttaaaat-gtaatgt-att---tggagactggaattttctcatttt |
12415648 |
T |
|
| Q |
112 |
ctttgtcggaaatgcagaatgcctatggaacactgcatggaggcgcggttggttccttggttgaagttctgtcaactgcttgtgctggaactgtagttac |
211 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||| ||||||||||| | |
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| T |
12415649 |
ctttgtcggaattgcagaatgcctatggaacactgcatggaggcgctgttgggtccttagttgaagttctgtcaactgcttgtgctagaactgtagttgc |
12415748 |
T |
|
| Q |
212 |
cgaggacaaggaacattttcttggggaaattagcatttcttac--ctctggcactccaataaatgtgagttcttgttttcactggtgattctttcctatg |
309 |
Q |
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||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
12415749 |
tgaggacaaggaactttttcttggggaaattagcatttcttacctctctggcactccaataaatgtgagttcttattttcactggtgattatttcctatg |
12415848 |
T |
|
| Q |
310 |
atgtccat |
317 |
Q |
| |
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|||||||| |
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|
| T |
12415849 |
atgtccat |
12415856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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