View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0134_1D_low_11 (Length: 322)
Name: NF0134_1D_low_11
Description: NF0134_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0134_1D_low_11
Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 16 - 308
Target Start/End: Original strand, 46239893 - 46240185
Alignment:
Q
16
ggacatcatggatgacatgaggacgaatcatgcagtgggtatcaccaaaggtagggcgtggaaagcaaaacagatagctcagaaaattgttgagggtgat
115
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
T
46239893
ggacatcatggatgacatgaggacgaatcatgcagtgggtatcaccaaaggtagggcgtggaaagctaaacagatagctcagaaaattgttgagggtgat
46239992
T
Q
116
gctgattgtcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtcctggaaacagggtgagtatcactgttgataggccagatccag
215
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||
T
46239993
gctgattgtcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtcctggaaatagtgtgagtatcaatgttgataggccagatccag
46240092
T
Q
216
gattacaacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatg
308
Q
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
T
46240093
gattacaacccaggtttggatctttttacttttgttttgatggttgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatg
46240185
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 308
Target Start/End: Original strand, 23541295 - 23541579
Alignment:
Q
24
tggatgacatgaggacgaatcatgcagtgggtatcaccaaaggtagggcgtggaaagcaaaacagatagctcagaaaattgttgagggtgatgctgattg
123
Q
|||||||||||||||| || |||||||||||||| || | |||||||| ||||| ||||||||||| ||||||| |||||||| |||||||||||| |
T
23541295
tggatgacatgaggacaaaccatgcagtgggtattacaatgggtagggcttggaaggcaaaacagattgctcagagtattgttgatggtgatgctgatag
23541394
T
Q
124
tcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtcctggaaacagggtgagtatcactgttgataggccagatccaggattacaa
223
Q
||||| | ||||| |||| |||||||| ||||||||||| ||| | ||||||| | |||| || | ||| ||||| ||| ||| | | |||
T
23541395
gcaatatgccatgatttggaggtatgctgcagaacttaaaagggtgaatgctggaaataatgtgaagataaatgtggatagaccaaccccatcaatccaa
23541494
T
Q
224
cccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatg
308
Q
||||||||||| ||||| |||||||||||||||||||| || ||||| || | ||||| ||||| |||||| ||||||| ||||
T
23541495
cccaggtttggttctttctacttttgttttgatggctgtaagaaaggtttcatcaatgggtgtagaccatttgttggggtagatg
23541579
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 16 - 308
Target Start/End: Complemental strand, 3437574 - 3437294
Alignment:
Q
16
ggacatcatggatgacatgaggacgaatcatgcagtgggtatcaccaaaggtagggcgtggaaagcaaaacagatagctcagaaaattgttgagggtgat
115
Q
||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
T
3437574
ggacatcatcgatgacatgaggacgaatcatgcagtgggta------------gggcgtggaaagcaaaacagatagctcagaaaattgttgagggtgat
3437487
T
Q
116
gctgattgtcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtcctggaaacagggtgagtatcactgttgataggccagatccag
215
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
T
3437486
gctgattgtcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtcctggaaacagtgtgagtatcaatgttgataggccagatccag
3437387
T
Q
216
gattacaacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatg
308
Q
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
T
3437386
gattacaacccaggtttggatctttttacttttgttttgatggatgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatg
3437294
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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