View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0134_1D_low_13 (Length: 314)
Name: NF0134_1D_low_13
Description: NF0134_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0134_1D_low_13
Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 54 - 311
Target Start/End: Original strand, 23332595 - 23332852
Alignment:
Q
54
atatgtggacgaatgagcgatagaagcgcatgaccgatccaccctcacgttggacaatcattttcgacatgggaggaagaaatttgttaggatagttgat
153
Q
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
T
23332595
atatatggacgaatgagcgatagaagcgcatgaccgatccaccctcacgtgggacaatcattttcgacatgggaggaagaaatttgttaggatagttgat
23332694
T
Q
154
ttcgactcctgatctctctgcgatagtcatatctagaagattcggctgtacataagtcagggtgacccacgcaccacgatctaccttatagaaacccttc
253
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
T
23332695
ttcgactcctgatctctctgcgatagtcatatctagaagattcggctgtacatacgtcagggtgacccacgcaccacgatctaccttatagaaacccttc
23332794
T
Q
254
agctcagcccaaccatcccgcagatagaccttgccatttttcacgtggaccttgacct
311
Q
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
T
23332795
agctcagcccaaccatcccgcagataaaccttgccatttttcacgtggaccttgacct
23332852
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 23322331 - 23322373
Alignment:
Q
17
gacatcaccaaacacaatcgttgtaaaatccaaacgcatatgt
59
Q
||||||||||||||||| ||||||||| |||||||||||||||
T
23322331
gacatcaccaaacacaaacgttgtaaactccaaacgcatatgt
23322373
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 23332498 - 23332540
Alignment:
Q
17
gacatcaccaaacacaatcgttgtaaaatccaaacgcatatgt
59
Q
||||||||||||||||| ||||||||| |||||||||||||||
T
23332498
gacatcaccaaacacaaacgttgtaaactccaaacgcatatgt
23332540
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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