View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0134_1D_low_18 (Length: 271)
Name: NF0134_1D_low_18
Description: NF0134_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0134_1D_low_18 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 2 - 254
Target Start/End: Complemental strand, 183539 - 183287
Alignment:
| Q |
2 |
caggtgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaaggtgccccc |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
183539 |
caggtgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaaggtgccccc |
183440 |
T |
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| Q |
102 |
tgttttttcagggtaagaaggggtagagaaaatgcctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatgccatactcccaagaa |
201 |
Q |
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| T |
183439 |
tgttttttcagggtaagaaggggtagagaaaatgcctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatgccatactcccaagaa |
183340 |
T |
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| Q |
202 |
aagctcgaacgaccttaaacaaaagggtacctgtacccgaaaccgacacaggt |
254 |
Q |
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| T |
183339 |
aagctcgaacgaccttaaacaaaagggtacctgtacccgaaaccgacacaggt |
183287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 2 - 254
Target Start/End: Original strand, 493977 - 494229
Alignment:
| Q |
2 |
caggtgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaaggtgccccc |
101 |
Q |
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| T |
493977 |
caggtgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaaggtgccccc |
494076 |
T |
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| Q |
102 |
tgttttttcagggtaagaaggggtagagaaaatgcctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatgccatactcccaagaa |
201 |
Q |
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| T |
494077 |
tgttttttcagggtaagaaggggtagagaaaatgcctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatgccatactcccaagaa |
494176 |
T |
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| Q |
202 |
aagctcgaacgaccttaaacaaaagggtacctgtacccgaaaccgacacaggt |
254 |
Q |
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| T |
494177 |
aagctcgaacgaccttaaacaaaagggtacctgtacccgaaaccgacacaggt |
494229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 2 - 254
Target Start/End: Original strand, 18191638 - 18191891
Alignment:
| Q |
2 |
caggtgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaaggtgccccc |
101 |
Q |
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| T |
18191638 |
caggtgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaaggtgccccc |
18191737 |
T |
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| Q |
102 |
tgttttttcagggtaagaagggg-tagagaaaatgcctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatgccatactcccaaga |
200 |
Q |
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| T |
18191738 |
tgttttttcagggtaagaagggggtagagaaaatgcctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatgccatactcccaaga |
18191837 |
T |
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| Q |
201 |
aaagctcgaacgaccttaaacaaaagggtacctgtacccgaaaccgacacaggt |
254 |
Q |
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| T |
18191838 |
aaagctcgaacgaccttaaacaaaagggtacctgtacccgaaaccgacacaggt |
18191891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 2 - 254
Target Start/End: Original strand, 34658976 - 34659228
Alignment:
| Q |
2 |
caggtgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaaggtgccccc |
101 |
Q |
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| T |
34658976 |
caggtgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaaggtgccccc |
34659075 |
T |
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| Q |
102 |
tgttttttcagggtaagaaggggtagagaaaatgcctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatgccatactcccaagaa |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34659076 |
tgttttttcagggtaagaaggggtagagaaaatgcctccagccaagattcgagtacgaggcgctccggcgctgaagtaattgatgccatactcccaagaa |
34659175 |
T |
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| Q |
202 |
aagctcgaacgaccttaaacaaaagggtacctgtacccgaaaccgacacaggt |
254 |
Q |
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| T |
34659176 |
aagctcgaacgaccttaaacaaaatggtacctgtacccgaaaccgacacaggt |
34659228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 135
Target Start/End: Original strand, 8174936 - 8174997
Alignment:
| Q |
73 |
ttatcggttcaagaacacaaggtgccccctgttttttcagggtaagaaggggtagagaaaatg |
135 |
Q |
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| T |
8174936 |
ttatcggttcaagcacacaaggtg-cccttgtttttgtagggtaagaagggatagagaaaatg |
8174997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 28 - 254
Target Start/End: Original strand, 14404532 - 14404758
Alignment:
| Q |
28 |
tgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaaggtgccccctgttttttcagggtaagaaggggtag |
127 |
Q |
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| T |
14404532 |
tgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaaggtgccccctgttttttcagggtaagaaggggtag |
14404631 |
T |
|
| Q |
128 |
agaaaatgcctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatgccatactcccaagaaaagctcgaacgaccttaaacaaaagg |
227 |
Q |
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| T |
14404632 |
agaaaatggctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatgccatactcccaagaaaagctcgaacgaccttaaacaaaagg |
14404731 |
T |
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| Q |
228 |
gtacctgtacccgaaaccgacacaggt |
254 |
Q |
| |
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| T |
14404732 |
gtacctgtacccgaaaccgacacaggt |
14404758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 45610235 - 45610202
Alignment:
| Q |
2 |
caggtgaatattcctgtactacctcttgttggtc |
35 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
45610235 |
caggtgaatattcctgtactacctcttgttggtc |
45610202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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