View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0134_1D_low_27 (Length: 228)

Name: NF0134_1D_low_27
Description: NF0134_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0134_1D_low_27
NF0134_1D_low_27
[»] chr7 (11 HSPs)
chr7 (82-217)||(5752096-5752231)
chr7 (1-36)||(7469864-7469899)
chr7 (1-36)||(9027034-9027069)
chr7 (1-36)||(11759540-11759575)
chr7 (1-36)||(20626446-20626481)
chr7 (1-36)||(20630337-20630372)
chr7 (1-36)||(20642756-20642791)
chr7 (1-36)||(27832488-27832523)
chr7 (1-36)||(31153691-31153726)
chr7 (1-35)||(28487966-28488000)
chr7 (1-37)||(44977-45013)
[»] chr8 (5 HSPs)
chr8 (1-38)||(18813341-18813378)
chr8 (1-36)||(15073167-15073202)
chr8 (1-36)||(18811167-18811202)
chr8 (1-36)||(28283062-28283097)
chr8 (1-37)||(24873038-24873074)
[»] chr3 (7 HSPs)
chr3 (1-38)||(53915336-53915373)
chr3 (1-37)||(9604446-9604482)
chr3 (1-36)||(6065633-6065668)
chr3 (1-36)||(25533807-25533842)
chr3 (1-36)||(36012208-36012243)
chr3 (1-36)||(43421260-43421295)
chr3 (1-34)||(47701522-47701555)
[»] chr5 (5 HSPs)
chr5 (1-37)||(38959971-38960007)
chr5 (1-36)||(18469413-18469448)
chr5 (1-36)||(36402170-36402205)
chr5 (1-36)||(39798433-39798468)
chr5 (4-38)||(39854889-39854923)
[»] chr4 (16 HSPs)
chr4 (1-37)||(22800704-22800740)
chr4 (1-37)||(37089211-37089247)
chr4 (1-36)||(3937126-3937161)
chr4 (1-36)||(14787274-14787309)
chr4 (1-36)||(14789273-14789308)
chr4 (1-36)||(22780212-22780247)
chr4 (1-36)||(36921338-36921373)
chr4 (1-36)||(38928024-38928059)
chr4 (1-36)||(44599680-44599715)
chr4 (1-36)||(47868859-47868894)
chr4 (1-36)||(49089009-49089044)
chr4 (1-37)||(6765300-6765336)
chr4 (1-37)||(16455679-16455715)
chr4 (1-33)||(36919432-36919464)
chr4 (4-36)||(53405594-53405626)
chr4 (4-36)||(56030913-56030945)
[»] scaffold0005 (2 HSPs)
scaffold0005 (1-36)||(50422-50457)
scaffold0005 (1-36)||(52421-52456)
[»] chr6 (4 HSPs)
chr6 (1-36)||(9020363-9020398)
chr6 (1-36)||(13057624-13057659)
chr6 (1-38)||(29754547-29754584)
chr6 (4-36)||(14458607-14458639)
[»] chr1 (10 HSPs)
chr1 (1-36)||(6995540-6995575)
chr1 (1-36)||(18839987-18840022)
chr1 (1-36)||(23816288-23816323)
chr1 (1-36)||(39462921-39462956)
chr1 (1-36)||(46431548-46431583)
chr1 (1-36)||(47906669-47906704)
chr1 (1-38)||(9459275-9459312)
chr1 (1-38)||(9463102-9463139)
chr1 (1-38)||(16231967-16232004)
chr1 (1-37)||(39932479-39932515)
[»] scaffold0045 (1 HSPs)
scaffold0045 (1-34)||(85638-85671)
[»] chr2 (3 HSPs)
chr2 (3-36)||(43623423-43623456)
chr2 (4-41)||(45238837-45238874)
chr2 (1-33)||(27105177-27105209)


Alignment Details
Target: chr7 (Bit Score: 112; Significance: 9e-57; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 82 - 217
Target Start/End: Original strand, 5752096 - 5752231
Alignment:
Q  82 aagcttcattggatgctaggttccttagtgggttgaaggttgaaagagttgaagctgcaatggtctttaaatcaggtggttttggcgatatcttgaccga 181  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||| ||    
T  5752096 aagcttcattggatgctaggttccttagtgggttgaaggatgaaagagttgaggctgcaaaggtctttaaatcaggtggctttggcgatatcttgactga 5752195  T
Q  182 ccaacaagttgacaagaagcagttgattgatgatgt 217  Q
    ||||||||| ||||||||||||||||||||||||||    
T  5752196 ccaacaagtagacaagaagcagttgattgatgatgt 5752231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 7469899 - 7469864
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaaca 36  Q
    ||||||||||| ||||||||||||||||||||||||    
T  7469899 ttgttattggtgtgatttttcatcgaattcgcaaca 7469864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 9027069 - 9027034
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaaca 36  Q
    ||||||||||| ||||||||||||||||||||||||    
T  9027069 ttgttattggtgtgatttttcatcgaattcgcaaca 9027034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 11759540 - 11759575
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaaca 36  Q
    ||||||||||| ||||||||||||||||||||||||    
T  11759540 ttgttattggtgtgatttttcatcgaattcgcaaca 11759575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 20626446 - 20626481
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaaca 36  Q
    ||||||||||| ||||||||||||||||||||||||    
T  20626446 ttgttattggtgtgatttttcatcgaattcgcaaca 20626481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 20630337 - 20630372
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaaca 36  Q
    ||||||||||| ||||||||||||||||||||||||    
T  20630337 ttgttattggtgtgatttttcatcgaattcgcaaca 20630372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 20642756 - 20642791
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaaca 36  Q
    ||||||||||| ||||||||||||||||||||||||    
T  20642756 ttgttattggtgtgatttttcatcgaattcgcaaca 20642791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 27832523 - 27832488
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaaca 36  Q
    |||||||||||||||||||||||||||||| |||||    
T  27832523 ttgttattggtatgatttttcatcgaattcacaaca 27832488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 31153726 - 31153691
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaaca 36  Q
    ||||||||||| ||||||||||||||||||||||||    
T  31153726 ttgttattggtgtgatttttcatcgaattcgcaaca 31153691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 28487966 - 28488000
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaac 35  Q
    ||||||||||| |||||||||||||||||||||||    
T  28487966 ttgttattggtgtgatttttcatcgaattcgcaac 28488000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 44977 - 45013
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaacag 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  44977 ttgttattggtgtgatttctcatcgaattcgcaacag 45013  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 18813341 - 18813378
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaacaga 38  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  18813341 ttgttattggtgtgatttttcatcgaattcgcaacaga 18813378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 15073167 - 15073202
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaaca 36  Q
    ||||||||||| ||||||||||||||||||||||||    
T  15073167 ttgttattggtgtgatttttcatcgaattcgcaaca 15073202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 18811167 - 18811202
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaaca 36  Q
    ||||||||||| ||||||||||||||||||||||||    
T  18811167 ttgttattggtgtgatttttcatcgaattcgcaaca 18811202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 28283097 - 28283062
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaaca 36  Q
    ||||||||||| ||||||||||||||||||||||||    
T  28283097 ttgttattggtgtgatttttcatcgaattcgcaaca 28283062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 24873074 - 24873038
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaacag 37  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  24873074 ttgttattggtgtgatttttcatcgaattcacaacag 24873038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 53915373 - 53915336
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaacaga 38  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  53915373 ttgttattggtgtgatttttcatcgaattcgcaacaga 53915336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 9604482 - 9604446
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaacag 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  9604482 ttgttattggtgtgatttttcatcgaattcgcaacag 9604446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 6065668 - 6065633
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaaca 36  Q
    ||||||||||| ||||||||||||||||||||||||    
T  6065668 ttgttattggtgtgatttttcatcgaattcgcaaca 6065633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 25533807 - 25533842
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaaca 36  Q
    ||||||||||| ||||||||||||||||||||||||    
T  25533807 ttgttattggtgtgatttttcatcgaattcgcaaca 25533842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 36012208 - 36012243
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaaca 36  Q
    ||||||||||| ||||||||||||||||||||||||    
T  36012208 ttgttattggtgtgatttttcatcgaattcgcaaca 36012243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 43421295 - 43421260
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaaca 36  Q
    ||||||||||| ||||||||||||||||||||||||    
T  43421295 ttgttattggtgtgatttttcatcgaattcgcaaca 43421260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 47701555 - 47701522
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaa 34  Q
    ||||||||||| ||||||||||||||||||||||    
T  47701555 ttgttattggtgtgatttttcatcgaattcgcaa 47701522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 38960007 - 38959971
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaacag 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  38960007 ttgttattggtgtgatttttcatcgaattcgcaacag 38959971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 18469413 - 18469448
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaaca 36  Q
    |||||||||||||||||||||||||||||| |||||    
T  18469413 ttgttattggtatgatttttcatcgaattcacaaca 18469448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 36402205 - 36402170
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaaca 36  Q
    ||||||||||| ||||||||||||||||||||||||    
T  36402205 ttgttattggtgtgatttttcatcgaattcgcaaca 36402170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 39798433 - 39798468
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaaca 36  Q
    ||||||||||| ||||||||||||||||||||||||    
T  39798433 ttgttattggtgtgatttttcatcgaattcgcaaca 39798468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 38
Target Start/End: Original strand, 39854889 - 39854923
Alignment:
Q  4 ttattggtatgatttttcatcgaattcgcaacaga 38  Q
    |||||||| ||||||||||||||||||||||||||    
T  39854889 ttattggtgtgatttttcatcgaattcgcaacaga 39854923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 22800740 - 22800704
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaacag 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  22800740 ttgttattggtgtgatttttcatcgaattcgcaacag 22800704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 37089247 - 37089211
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaacag 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  37089247 ttgttattggtgtgatttttcatcgaattcgcaacag 37089211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 3937161 - 3937126
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaaca 36  Q
    ||||||||||| ||||||||||||||||||||||||    
T  3937161 ttgttattggtgtgatttttcatcgaattcgcaaca 3937126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 14787309 - 14787274
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaaca 36  Q
    ||||||||||| ||||||||||||||||||||||||    
T  14787309 ttgttattggtgtgatttttcatcgaattcgcaaca 14787274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 14789308 - 14789273
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaaca 36  Q
    ||||||||||| ||||||||||||||||||||||||    
T  14789308 ttgttattggtgtgatttttcatcgaattcgcaaca 14789273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 22780247 - 22780212
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaaca 36  Q
    ||||||||||| ||||||||||||||||||||||||    
T  22780247 ttgttattggtgtgatttttcatcgaattcgcaaca 22780212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 36921373 - 36921338
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaaca 36  Q
    ||||||||||| ||||||||||||||||||||||||    
T  36921373 ttgttattggtgtgatttttcatcgaattcgcaaca 36921338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 38928059 - 38928024
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaaca 36  Q
    ||||||||||| ||||||||||||||||||||||||    
T  38928059 ttgttattggtgtgatttttcatcgaattcgcaaca 38928024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 44599715 - 44599680
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaaca 36  Q
    ||||||||||| ||||||||||||||||||||||||    
T  44599715 ttgttattggtgtgatttttcatcgaattcgcaaca 44599680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 47868859 - 47868894
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaaca 36  Q
    ||||||||||| ||||||||||||||||||||||||    
T  47868859 ttgttattggtgtgatttttcatcgaattcgcaaca 47868894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 49089009 - 49089044
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaaca 36  Q
    ||||||||||| ||||||||||||||||||||||||    
T  49089009 ttgttattggtgtgatttttcatcgaattcgcaaca 49089044  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 6765300 - 6765336
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaacag 37  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  6765300 ttgttattggtgtgatttttcatcgaattcacaacag 6765336  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 16455679 - 16455715
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaacag 37  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  16455679 ttgttattggtgtgatttttcatcgaattcacaacag 16455715  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 36919464 - 36919432
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgca 33  Q
    ||||||||||| |||||||||||||||||||||    
T  36919464 ttgttattggtgtgatttttcatcgaattcgca 36919432  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 53405594 - 53405626
Alignment:
Q  4 ttattggtatgatttttcatcgaattcgcaaca 36  Q
    |||||||| ||||||||||||||||||||||||    
T  53405594 ttattggtgtgatttttcatcgaattcgcaaca 53405626  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 56030913 - 56030945
Alignment:
Q  4 ttattggtatgatttttcatcgaattcgcaaca 36  Q
    |||||||| ||||||||||||||||||||||||    
T  56030913 ttattggtgtgatttttcatcgaattcgcaaca 56030945  T

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Target: scaffold0005 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 50422 - 50457
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaaca 36  Q
    ||||||||||| ||||||||||||||||||||||||    
T  50422 ttgttattggtgtgatttttcatcgaattcgcaaca 50457  T

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Target: scaffold0005; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 52421 - 52456
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaaca 36  Q
    ||||||||||| ||||||||||||||||||||||||    
T  52421 ttgttattggtgtgatttttcatcgaattcgcaaca 52456  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 9020363 - 9020398
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaaca 36  Q
    ||||||||||| ||||||||||||||||||||||||    
T  9020363 ttgttattggtgtgatttttcatcgaattcgcaaca 9020398  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 13057624 - 13057659
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaaca 36  Q
    ||||||||||| ||||||||||||||||||||||||    
T  13057624 ttgttattggtgtgatttttcatcgaattcgcaaca 13057659  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 29754584 - 29754547
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaacaga 38  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  29754584 ttgttattggtgtgatttttcatcgaattcacaacaga 29754547  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 14458639 - 14458607
Alignment:
Q  4 ttattggtatgatttttcatcgaattcgcaaca 36  Q
    |||||||| ||||||||||||||||||||||||    
T  14458639 ttattggtgtgatttttcatcgaattcgcaaca 14458607  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 6995575 - 6995540
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaaca 36  Q
    ||||||||||| ||||||||||||||||||||||||    
T  6995575 ttgttattggtgtgatttttcatcgaattcgcaaca 6995540  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 18839987 - 18840022
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaaca 36  Q
    ||||||||||| ||||||||||||||||||||||||    
T  18839987 ttgttattggtgtgatttttcatcgaattcgcaaca 18840022  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 23816288 - 23816323
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaaca 36  Q
    ||||||||||| ||||||||||||||||||||||||    
T  23816288 ttgttattggtgtgatttttcatcgaattcgcaaca 23816323  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 39462921 - 39462956
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaaca 36  Q
    ||||||||||| ||||||||||||||||||||||||    
T  39462921 ttgttattggtgtgatttttcatcgaattcgcaaca 39462956  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 46431583 - 46431548
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaaca 36  Q
    ||||||||||| ||||||||||||||||||||||||    
T  46431583 ttgttattggtgtgatttttcatcgaattcgcaaca 46431548  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 47906669 - 47906704
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaaca 36  Q
    ||||||||||| ||||||||||||||||||||||||    
T  47906669 ttgttattggtgtgatttttcatcgaattcgcaaca 47906704  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 9459312 - 9459275
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaacaga 38  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  9459312 ttgttattggtgtgatttttcatcgaattcacaacaga 9459275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 9463139 - 9463102
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaacaga 38  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  9463139 ttgttattggtgtgatttttcatcgaattcacaacaga 9463102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 16231967 - 16232004
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaacaga 38  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  16231967 ttgttattggtgtgatttttcatcgaattcacaacaga 16232004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 39932479 - 39932515
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaacag 37  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  39932479 ttgttattggtgtgatttttcatcgaattcacaacag 39932515  T

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Target: scaffold0045 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 85638 - 85671
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgcaa 34  Q
    ||||||||||| ||||||||||||||||||||||    
T  85638 ttgttattggtgtgatttttcatcgaattcgcaa 85671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 43623456 - 43623423
Alignment:
Q  3 gttattggtatgatttttcatcgaattcgcaaca 36  Q
    ||||||||| ||||||||||||||||||||||||    
T  43623456 gttattggtgtgatttttcatcgaattcgcaaca 43623423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 45238874 - 45238837
Alignment:
Q  4 ttattggtatgatttttcatcgaattcgcaacagaact 41  Q
    |||||||| |||||||||||||||||||||||| ||||    
T  45238874 ttattggtgtgatttttcatcgaattcgcaacaaaact 45238837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 27105177 - 27105209
Alignment:
Q  1 ttgttattggtatgatttttcatcgaattcgca 33  Q
    ||||||||||| |||||||||||||||||||||    
T  27105177 ttgttattggtgtgatttttcatcgaattcgca 27105209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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