View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0134_1D_low_30 (Length: 218)
Name: NF0134_1D_low_30
Description: NF0134_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0134_1D_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 21 - 200
Target Start/End: Complemental strand, 25882720 - 25882541
Alignment:
| Q |
21 |
atgaattgtttaggtatctactgatatactttgggtggatatcgcaattccaatgtttgtaaactttgtactgatagcatacttacaattactcagtatc |
120 |
Q |
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| T |
25882720 |
atgaaatgtttaggtatcgactgatatactttgggtggatatcgcaattccaatgtttataaactttgtactgatagcatacttacaattactcagtatc |
25882621 |
T |
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| Q |
121 |
gtcattgtcatatgccagaattcttgggagactgtcttcctcgtaattccactgttttggctcaacaaccggtatagggt |
200 |
Q |
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| T |
25882620 |
gtcattgtcatatgccagaattcttgggagactgtcttcctcgtaattccactgttttggctcaacaaccggtatagggt |
25882541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 116; Significance: 4e-59; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 21 - 200
Target Start/End: Complemental strand, 14317429 - 14317250
Alignment:
| Q |
21 |
atgaattgtttaggtatctactgatatactttgggtggatatcgcaattccaatgtttgtaaactttgtactgatagcatacttacaattactcagtatc |
120 |
Q |
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| T |
14317429 |
atgaattgcttaggtatctaccgatatactttgggttgatatatcaattccaatgttggtaaactttgtaatggtagcatacttatcattattcagtatc |
14317330 |
T |
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| Q |
121 |
gtcattgtcatatgccagaattcttgggagactgtcttcctcgtaattccactgttttggctcaacaaccggtatagggt |
200 |
Q |
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| T |
14317329 |
ctcattgtcacatgtcagaattcttgggagactgtcttcctcttaattccactgttttggctcaacaactggtatagggt |
14317250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 21 - 200
Target Start/End: Complemental strand, 14278912 - 14278733
Alignment:
| Q |
21 |
atgaattgtttaggtatctactgatatactttgggtggatatcgcaattccaatgtttgtaaactttgtactgatagcatacttacaattactcagtatc |
120 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| || || |||||||| |||| |||||||| |
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| T |
14278912 |
atgaattgcttaggtatctactgatatactttgggtggatatacaaattcccatgtttgtaaactttctaacgacgacatacttaggattattcagtatc |
14278813 |
T |
|
| Q |
121 |
gtcattgtcatatgccagaattcttgggagactgtcttcctcgtaattccactgttttggctcaacaaccggtatagggt |
200 |
Q |
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|||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
14278812 |
ctcatagtcacgtgccagaattcttgggagactgtcttcctcttaattccactgttttggctcaacaactggtatagggt |
14278733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 21 - 200
Target Start/End: Complemental strand, 14300689 - 14300510
Alignment:
| Q |
21 |
atgaattgtttaggtatctactgatatactttgggtggatatcgcaattccaatgtttgtaaactttgtactgatagcatacttacaattactcagtatc |
120 |
Q |
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||||||||||||||||||||| |||||||||| ||||||| ||||||||| ||||||||||| || || | ||| || |||| |||||||| |
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| T |
14300689 |
atgaattgtttaggtatctaccgatatactttccctggatatacaaattccaatctttgtaaacttagtgacgacaacattagtaggattattcagtatc |
14300590 |
T |
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| Q |
121 |
gtcattgtcatatgccagaattcttgggagactgtcttcctcgtaattccactgttttggctcaacaaccggtatagggt |
200 |
Q |
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|| | |||| |||||||||||||||||||| |||||||| ||||||||||||||||||||| |||| |||||||||| |
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| T |
14300589 |
ctcgtagtcacgtgccagaattcttgggagaccgtcttcctattaattccactgttttggctcagcaactggtatagggt |
14300510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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