View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0134_1D_low_34 (Length: 212)
Name: NF0134_1D_low_34
Description: NF0134_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0134_1D_low_34 |
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| [»] chr6 (6 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 2 - 212
Target Start/End: Original strand, 1410914 - 1411124
Alignment:
| Q |
2 |
tttggtgtttcaatctttatgtggcatgtacatttattcaagtctcaagtgagaagaatggcaatagtaactctagcaaatgtgtgtaccctgcaattta |
101 |
Q |
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| T |
1410914 |
tttggtgtttcaatctttatgtggcatgtacatttattcaagtctcaagtgagaagaatggcaatagtaactctagcaaatgtgtgtaccctgcaattta |
1411013 |
T |
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| Q |
102 |
taactttggtgattcaaattcggatactggaactgtatatgcaacattcacaggtgttcaatctcctaacggaataagcttctttggaaacatatcagga |
201 |
Q |
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| T |
1411014 |
taactttggtgattcaaattcggataccggaactgtatatgcaacatttacaggtgttcaatctcctaacggaataagcttctttggaaacatatcagga |
1411113 |
T |
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| Q |
202 |
agagcttctga |
212 |
Q |
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||||||||||| |
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| T |
1411114 |
agagcttctga |
1411124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 78 - 212
Target Start/End: Original strand, 1414366 - 1414500
Alignment:
| Q |
78 |
caaatgtgtgtaccctgcaatttataactttggtgattcaaattcggatactggaactgtatatgcaacattcacaggtgttcaatctcctaacggaata |
177 |
Q |
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| T |
1414366 |
caaatgtgtgtaccctgcaatttataactttggtgactcaaattcagatactggaactatatatgcaacatatacaagtgttcaacctcctaatggaata |
1414465 |
T |
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| Q |
178 |
agcttctttggaaacatatcaggaagagcttctga |
212 |
Q |
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| T |
1414466 |
agcttctttggaaacatatcaggaagagcttctga |
1414500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 80 - 212
Target Start/End: Original strand, 1419917 - 1420046
Alignment:
| Q |
80 |
aatgtgtgtaccctgcaatttataactttggtgattcaaattcggatactggaactgtatatgcaacattcacaggtgttcaatctcctaacggaataag |
179 |
Q |
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| T |
1419917 |
aatgtgtgtaccctgcaatttataactttggtgactcaaattcagatactggaactgcatatgcaactttcttatgtaatcaacctcctaatggcataag |
1420016 |
T |
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| Q |
180 |
cttctttggaaacatatcaggaagagcttctga |
212 |
Q |
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| T |
1420017 |
---ctttggaaacatatcagggagagcttctga |
1420046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 79 - 212
Target Start/End: Original strand, 1408109 - 1408242
Alignment:
| Q |
79 |
aaatgtgtgtaccctgcaatttataactttggtgattcaaattcggatactggaactgtatatgcaacattcacaggtgttcaatctcctaacggaataa |
178 |
Q |
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||||||| ||||||||||||||| || |||||||| |||||||| ||||||||| | | | |||||| || ||||| |||| ||||||| || |||| |
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| T |
1408109 |
aaatgtgagtaccctgcaatttacaattttggtgactcaaattcagatactggagcagcaaatgcaatatacacagctgttacgcctcctaatggtataa |
1408208 |
T |
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| Q |
179 |
gcttctttggaaacatatcaggaagagcttctga |
212 |
Q |
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| T |
1408209 |
gctactttggaagcaccacaggaagagcttctga |
1408242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 1419863 - 1419912
Alignment:
| Q |
2 |
tttggtgtttcaatctttatgtggcatgtacatttattcaagtctcaagt |
51 |
Q |
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| T |
1419863 |
tttggtgtttcaacctgtatgtgacatgtacatttattcaagtttcaagt |
1419912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 1414314 - 1414365
Alignment:
| Q |
2 |
tttggtgtttcaatctttatgtggcatgtacatttattcaagtctcaagtga |
53 |
Q |
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| T |
1414314 |
tttggtgtttcaacctgtatgtgacatgtaaatttattcaagtttcaagtga |
1414365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 79 - 204
Target Start/End: Original strand, 3600507 - 3600632
Alignment:
| Q |
79 |
aaatgtgtgtaccctgcaatttataactttggtgattcaaattcggatactggaactgtatatgcaacattcacaggtgttcaatctcctaacggaataa |
178 |
Q |
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|||||||| ||||| ||||| || ||||||||||| || ||||| ||||||||| ||| |||||||||| | ||| |||| | |||||| || |||| |
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| T |
3600507 |
aaatgtgtctacccagcaatatacaactttggtgactccaattcagatactggagctggatatgcaacaatggcagctgttgagcatcctaatggtataa |
3600606 |
T |
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| Q |
179 |
gcttctttggaaacatatcaggaaga |
204 |
Q |
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| T |
3600607 |
gcttctttggaagcatctcaggaaga |
3600632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 79 - 204
Target Start/End: Original strand, 14339374 - 14339499
Alignment:
| Q |
79 |
aaatgtgtgtaccctgcaatttataactttggtgattcaaattcggatactggaactgtatatgcaacattcacaggtgttcaatctcctaacggaataa |
178 |
Q |
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| T |
14339374 |
aaatgtgtctacccagcaatatacaactttggtgactccaattcagatactggagctggatatgcaacaacggcagctgttgagtatcctaatggtataa |
14339473 |
T |
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| Q |
179 |
gcttctttggaaacatatcaggaaga |
204 |
Q |
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| T |
14339474 |
gcttctttggaagcatctcaggaaga |
14339499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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