View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0134_1D_low_35 (Length: 209)
Name: NF0134_1D_low_35
Description: NF0134_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0134_1D_low_35 |
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Alignment Details
Target: chr6 (Bit Score: 102; Significance: 8e-51; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 14 - 151
Target Start/End: Original strand, 32048615 - 32048746
Alignment:
| Q |
14 |
gaagcaatatgacgaggacaatcctccatccaaattgtatctacagaaaacaaagcaaactttaaataggttgatgattaaaaatataaagcaatcctga |
113 |
Q |
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| T |
32048615 |
gaagcaatatgacgaggacaatcctccatccaaattgtatctacagaaaataaagcaaac-ttaaataggttgatgattaaaaatataaagcaatcctga |
32048713 |
T |
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| Q |
114 |
atcctcaagacaatgaggattctccattcccattaaaa |
151 |
Q |
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| T |
32048714 |
atcct-----cattgaggattctccattcccattaaaa |
32048746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 203
Target Start/End: Original strand, 32048963 - 32049000
Alignment:
| Q |
166 |
cattgatagaatacagttatcagtcttgttggttaaag |
203 |
Q |
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| T |
32048963 |
cattgatagaatacagttatcagtcttgttggttaaag |
32049000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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