View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0134_1D_low_4 (Length: 500)

Name: NF0134_1D_low_4
Description: NF0134_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0134_1D_low_4
NF0134_1D_low_4
[»] chr2 (46 HSPs)
chr2 (24-500)||(35993096-35993572)
chr2 (270-371)||(32364693-32364794)
chr2 (226-375)||(15120186-15120335)
chr2 (238-363)||(36415604-36415728)
chr2 (226-376)||(8017436-8017586)
chr2 (228-473)||(43456627-43456877)
chr2 (305-362)||(5781685-5781742)
chr2 (305-370)||(10285868-10285933)
chr2 (305-360)||(10285373-10285428)
chr2 (276-342)||(1494414-1494480)
chr2 (227-337)||(33197180-33197290)
chr2 (285-363)||(35378993-35379071)
chr2 (268-345)||(9996771-9996848)
chr2 (277-346)||(11063520-11063589)
chr2 (318-363)||(42457963-42458008)
chr2 (236-351)||(5902479-5902592)
chr2 (253-349)||(18884896-18884992)
chr2 (219-351)||(40158745-40158877)
chr2 (268-342)||(5759535-5759609)
chr2 (317-360)||(7928308-7928351)
chr2 (268-375)||(12313133-12313240)
chr2 (298-361)||(29316765-29316828)
chr2 (281-344)||(33256774-33256837)
chr2 (313-372)||(40279413-40279472)
chr2 (305-372)||(43065447-43065514)
chr2 (326-373)||(45229516-45229563)
chr2 (305-371)||(1893278-1893344)
chr2 (317-379)||(3227692-3227754)
chr2 (305-359)||(5826236-5826290)
chr2 (316-346)||(36236450-36236480)
chr2 (270-363)||(41293124-41293218)
chr2 (305-347)||(44606107-44606149)
chr2 (298-363)||(680518-680583)
chr2 (268-337)||(787373-787442)
chr2 (298-363)||(1647251-1647316)
chr2 (317-362)||(3611242-3611287)
chr2 (402-471)||(4550657-4550726)
chr2 (298-351)||(5902602-5902655)
chr2 (305-346)||(12147489-12147530)
chr2 (298-363)||(33192217-33192282)
chr2 (298-351)||(42621365-42621418)
chr2 (402-471)||(43635221-43635290)
chr2 (317-345)||(15978018-15978046)
chr2 (332-376)||(37474758-37474802)
chr2 (277-321)||(39962268-39962312)
chr2 (303-363)||(44443336-44443396)
[»] chr1 (59 HSPs)
chr1 (226-350)||(30815572-30815695)
chr1 (230-363)||(10199330-10199463)
chr1 (298-363)||(27140493-27140558)
chr1 (305-363)||(3224438-3224496)
chr1 (226-372)||(12564417-12564563)
chr1 (241-363)||(32515374-32515496)
chr1 (229-302)||(5157148-5157221)
chr1 (226-339)||(23373231-23373343)
chr1 (298-363)||(28689442-28689507)
chr1 (299-376)||(36151496-36151573)
chr1 (278-363)||(37941955-37942040)
chr1 (317-362)||(47885042-47885087)
chr1 (227-351)||(6292520-6292643)
chr1 (270-346)||(28935838-28935914)
chr1 (305-352)||(15687083-15687130)
chr1 (305-372)||(25479587-25479654)
chr1 (325-372)||(34952221-34952268)
chr1 (255-346)||(38170637-38170728)
chr1 (226-313)||(44375277-44375364)
chr1 (298-376)||(11639406-11639484)
chr1 (278-363)||(6279414-6279499)
chr1 (236-345)||(15579515-15579624)
chr1 (302-363)||(16981930-16981991)
chr1 (227-320)||(34536216-34536309)
chr1 (270-351)||(41195155-41195236)
chr1 (305-365)||(3319930-3319989)
chr1 (298-346)||(11695893-11695941)
chr1 (268-376)||(17420205-17420313)
chr1 (313-361)||(22813615-22813663)
chr1 (278-362)||(30259456-30259540)
chr1 (226-346)||(33723300-33723420)
chr1 (317-361)||(38503474-38503518)
chr1 (226-345)||(3597199-3597318)
chr1 (227-346)||(4868432-4868550)
chr1 (305-372)||(27887115-27887182)
chr1 (268-351)||(31517700-31517783)
chr1 (305-351)||(5886991-5887037)
chr1 (317-363)||(7137007-7137053)
chr1 (305-363)||(12477284-12477342)
chr1 (226-284)||(24460319-24460377)
chr1 (313-363)||(28262624-28262674)
chr1 (217-351)||(28482142-28482276)
chr1 (313-359)||(33975589-33975635)
chr1 (317-363)||(34290251-34290297)
chr1 (305-363)||(46252679-46252737)
chr1 (326-372)||(49888773-49888819)
chr1 (298-351)||(4768819-4768872)
chr1 (268-345)||(29723522-29723599)
chr1 (270-363)||(37811867-37811960)
chr1 (270-335)||(38001639-38001704)
chr1 (226-350)||(38867751-38867873)
chr1 (305-362)||(49175635-49175692)
chr1 (298-346)||(4549262-4549310)
chr1 (307-371)||(6231815-6231879)
chr1 (403-463)||(6659591-6659651)
chr1 (298-346)||(7761601-7761649)
chr1 (323-363)||(23402046-23402086)
chr1 (323-363)||(35590907-35590947)
chr1 (303-363)||(43113126-43113186)
[»] chr3 (29 HSPs)
chr3 (272-376)||(37273136-37273240)
chr3 (306-372)||(33883748-33883814)
chr3 (239-360)||(24624228-24624349)
chr3 (240-371)||(31010409-31010540)
chr3 (300-363)||(39602202-39602265)
chr3 (298-363)||(1217790-1217855)
chr3 (268-345)||(32103477-32103554)
chr3 (313-376)||(2719470-2719533)
chr3 (268-359)||(43115075-43115166)
chr3 (326-363)||(25075081-25075118)
chr3 (314-363)||(34924544-34924593)
chr3 (277-358)||(51206467-51206548)
chr3 (324-372)||(21367673-21367721)
chr3 (298-362)||(23785271-23785335)
chr3 (307-351)||(41633387-41633431)
chr3 (279-363)||(51130765-51130849)
chr3 (401-476)||(29094256-29094331)
chr3 (325-363)||(44488898-44488936)
chr3 (317-351)||(50946295-50946329)
chr3 (306-363)||(6483816-6483873)
chr3 (236-345)||(11040542-11040651)
chr3 (326-363)||(28795871-28795908)
chr3 (326-363)||(53789479-53789516)
chr3 (270-346)||(11039301-11039377)
chr3 (270-346)||(20194995-20195070)
chr3 (227-339)||(20210847-20210959)
chr3 (324-364)||(24085354-24085394)
chr3 (240-340)||(41724250-41724350)
chr3 (278-371)||(42817192-42817287)
[»] chr7 (29 HSPs)
chr7 (226-373)||(28691754-28691900)
chr7 (227-331)||(30751566-30751670)
chr7 (268-346)||(39345503-39345581)
chr7 (270-351)||(48157082-48157163)
chr7 (268-339)||(33894666-33894737)
chr7 (298-376)||(9038114-9038191)
chr7 (317-379)||(34035916-34035978)
chr7 (313-363)||(40530414-40530464)
chr7 (401-471)||(49060420-49060490)
chr7 (320-373)||(33552862-33552915)
chr7 (287-351)||(7244707-7244771)
chr7 (229-353)||(12234810-12234934)
chr7 (401-476)||(31341069-31341144)
chr7 (280-363)||(42281486-42281569)
chr7 (269-363)||(27626084-27626178)
chr7 (313-363)||(39280984-39281034)
chr7 (305-351)||(46082063-46082109)
chr7 (317-362)||(2825240-2825285)
chr7 (298-363)||(5628557-5628621)
chr7 (226-363)||(30535578-30535715)
chr7 (318-363)||(37064230-37064275)
chr7 (326-371)||(37064482-37064527)
chr7 (305-346)||(44808190-44808231)
chr7 (305-346)||(47134754-47134795)
chr7 (268-372)||(3610700-3610804)
chr7 (298-338)||(12834952-12834992)
chr7 (227-351)||(22387815-22387939)
chr7 (308-372)||(24363601-24363665)
chr7 (324-376)||(39907805-39907857)
[»] chr8 (29 HSPs)
chr8 (236-346)||(6950354-6950464)
chr8 (279-363)||(9540967-9541051)
chr8 (268-363)||(11569417-11569512)
chr8 (397-477)||(11415028-11415108)
chr8 (307-363)||(30389114-30389170)
chr8 (324-371)||(14247240-14247287)
chr8 (277-363)||(4055585-4055671)
chr8 (226-352)||(9700027-9700153)
chr8 (298-363)||(2364483-2364548)
chr8 (298-363)||(8062344-8062409)
chr8 (272-360)||(42215270-42215358)
chr8 (305-360)||(25869263-25869318)
chr8 (268-351)||(44401588-44401670)
chr8 (317-351)||(3536954-3536988)
chr8 (305-363)||(11795107-11795165)
chr8 (305-363)||(20672765-20672823)
chr8 (268-361)||(24326050-24326141)
chr8 (239-345)||(30191072-30191178)
chr8 (313-354)||(44033556-44033595)
chr8 (305-346)||(3600735-3600776)
chr8 (229-290)||(8535976-8536037)
chr8 (305-346)||(14339602-14339643)
chr8 (305-353)||(2594994-2595042)
chr8 (277-337)||(7878496-7878555)
chr8 (226-375)||(12851179-12851330)
chr8 (401-461)||(12972746-12972806)
chr8 (270-361)||(29168018-29168110)
chr8 (298-358)||(41606893-41606953)
chr8 (226-342)||(41620210-41620325)
[»] chr6 (24 HSPs)
chr6 (253-363)||(34939759-34939869)
chr6 (226-363)||(281766-281903)
chr6 (250-336)||(2732189-2732275)
chr6 (226-351)||(7785662-7785787)
chr6 (401-474)||(9027454-9027527)
chr6 (305-346)||(9027610-9027651)
chr6 (231-372)||(33067164-33067305)
chr6 (324-363)||(835265-835304)
chr6 (326-364)||(160970-161008)
chr6 (272-346)||(2023350-2023424)
chr6 (305-351)||(3528830-3528876)
chr6 (305-363)||(6647402-6647460)
chr6 (304-346)||(29296291-29296333)
chr6 (268-337)||(3775088-3775157)
chr6 (313-370)||(24836207-24836264)
chr6 (240-321)||(27857415-27857496)
chr6 (313-346)||(27894078-27894111)
chr6 (306-351)||(27909636-27909681)
chr6 (324-365)||(31624957-31624998)
chr6 (287-363)||(4420658-4420734)
chr6 (324-376)||(8364992-8365044)
chr6 (326-362)||(12230377-12230413)
chr6 (420-476)||(22691657-22691713)
chr6 (323-371)||(31671089-31671137)
[»] chr5 (33 HSPs)
chr5 (298-363)||(41957441-41957506)
chr5 (239-372)||(40534205-40534338)
chr5 (226-346)||(41830884-41831004)
chr5 (313-376)||(7319013-7319076)
chr5 (268-363)||(38104817-38104912)
chr5 (401-475)||(26516174-26516248)
chr5 (306-376)||(34975366-34975436)
chr5 (242-343)||(1019400-1019501)
chr5 (303-351)||(19138712-19138760)
chr5 (226-346)||(31208504-31208624)
chr5 (324-363)||(4014440-4014479)
chr5 (313-376)||(7319408-7319471)
chr5 (317-348)||(8334601-8334632)
chr5 (312-351)||(14182385-14182424)
chr5 (270-361)||(28586728-28586819)
chr5 (277-363)||(4619722-4619808)
chr5 (270-363)||(7984984-7985078)
chr5 (298-360)||(8177522-8177584)
chr5 (313-371)||(10280603-10280661)
chr5 (317-351)||(34160758-34160792)
chr5 (305-363)||(36639537-36639595)
chr5 (294-372)||(40205060-40205138)
chr5 (313-363)||(42582511-42582561)
chr5 (298-351)||(1899181-1899234)
chr5 (268-345)||(10272391-10272468)
chr5 (313-362)||(12425587-12425636)
chr5 (298-363)||(13605363-13605428)
chr5 (298-351)||(14331394-14331447)
chr5 (327-364)||(43300892-43300929)
chr5 (298-346)||(13604839-13604887)
chr5 (298-346)||(31694550-31694598)
chr5 (323-363)||(32059374-32059414)
chr5 (306-346)||(35963273-35963313)
[»] chr4 (41 HSPs)
chr4 (226-372)||(11264307-11264453)
chr4 (298-363)||(28614798-28614863)
chr4 (229-346)||(25896812-25896933)
chr4 (271-339)||(52754638-52754706)
chr4 (401-468)||(46053583-46053650)
chr4 (268-363)||(50799990-50800084)
chr4 (226-311)||(7367972-7368057)
chr4 (270-363)||(44319964-44320057)
chr4 (227-379)||(21043155-21043306)
chr4 (324-360)||(29601024-29601060)
chr4 (315-359)||(47970315-47970359)
chr4 (298-353)||(24929518-24929573)
chr4 (236-351)||(33534097-33534212)
chr4 (403-462)||(39063768-39063827)
chr4 (313-376)||(53673663-53673726)
chr4 (270-360)||(6987703-6987793)
chr4 (268-346)||(42461283-42461361)
chr4 (226-363)||(46415709-46415847)
chr4 (384-470)||(51555970-51556056)
chr4 (279-349)||(53155289-53155359)
chr4 (226-336)||(54277241-54277351)
chr4 (386-428)||(54414872-54414914)
chr4 (326-363)||(2977995-2978032)
chr4 (239-372)||(2996579-2996712)
chr4 (268-345)||(3176064-3176141)
chr4 (313-362)||(5131255-5131304)
chr4 (384-469)||(8422940-8423025)
chr4 (304-353)||(8469373-8469422)
chr4 (270-362)||(13126537-13126630)
chr4 (317-350)||(25332803-25332836)
chr4 (305-346)||(30024738-30024779)
chr4 (228-289)||(36577462-36577523)
chr4 (313-353)||(8468973-8469013)
chr4 (316-372)||(11158365-11158421)
chr4 (227-363)||(14011249-14011385)
chr4 (236-292)||(18628481-18628537)
chr4 (323-351)||(21879631-21879659)
chr4 (323-363)||(22662025-22662065)
chr4 (323-363)||(22666504-22666544)
chr4 (402-470)||(24193466-24193534)
chr4 (298-346)||(32831746-32831793)
[»] scaffold0159 (1 HSPs)
scaffold0159 (305-362)||(27017-27074)
[»] scaffold0020 (1 HSPs)
scaffold0020 (226-363)||(159891-160028)
[»] scaffold0311 (1 HSPs)
scaffold0311 (255-345)||(10564-10654)
[»] scaffold0003 (1 HSPs)
scaffold0003 (298-372)||(306332-306406)
[»] scaffold0147 (1 HSPs)
scaffold0147 (305-362)||(12701-12758)


Alignment Details
Target: chr2 (Bit Score: 465; Significance: 0; HSPs: 46)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 24 - 500
Target Start/End: Original strand, 35993096 - 35993572
Alignment:
Q  24 caaccaggcaaatcaccaacatcagtgatggcttgtatcgtgaatttagcaaatcaatttcaacgatcagattactatcaatggtcaagatttctctaaa 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35993096 caaccaggcaaatcaccaacatcagtgatggcttgtatcgtgaatttagcaaatcaatttcaacgatcagattactatcaatggtcaagatttctctaaa 35993195  T
Q  124 gtcaccttttgactacggggaatacattcacgatcgtgaatgccattgtcgtaacatcctaaaagtcccctccaaccccaacacacacagacaattatgg 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  35993196 gtcaccttttgactacggggaatacattcacgatcgtgaatgccattgtcgtaacatcctaaaagtcccctccaaccccaacacacacagacaattacgg 35993295  T
Q  224 tactgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaat 323  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35993296 tactgtttggaatgacttatttgaatttgtctaccgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaat 35993395  T
Q  324 tgttttcagcttattttcataagttctctatgatagcttacgcaaacaatttaactctaccttttattaaaataatggcttatacataagcacatatatg 423  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35993396 tgttttcagcttattttcataagttctctatgatagcttatgcaaacaatttaactctaccttttattaaaataatggcttatacataagcacatatatg 35993495  T
Q  424 ataagtgatcatgcaataagtgcttaactaagctgtttacccaaacagggcctgtatctcattctatcttgttctat 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35993496 ataagtgatcatgcaataagtgcttaactaagctgtttacccaaacagggcctgtatctcattctatcttgttctat 35993572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 270 - 371
Target Start/End: Original strand, 32364693 - 32364794
Alignment:
Q  270 ttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagcttacgcaaa 369  Q
    |||||| | |||||||||||||| ||| || ||| ||||||||||||||| | |||||||||||||||||||||||| |||||| ||||| ||||| |||    
T  32364693 ttgtgaaattgtttgggagagcttataaaaccagcttatgacgtgtccatgagttgttttcagcttattttcataagatctctaagatagtttacgtaaa 32364792  T
Q  370 ca 371  Q
    ||    
T  32364793 ca 32364794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 226 - 375
Target Start/End: Complemental strand, 15120335 - 15120186
Alignment:
Q  226 ctgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattg 325  Q
    ||||||||| ||||||||||||| || ||||||  ||| || | ||||||  ||||||||||||||| ||  |||||  ||||||| ||| ||| |  ||    
T  15120335 ctgtttggattgacttatttgaacttatctactagcataaacagttgtgaatctgtttgggagagcttatggaaacaacttatgacatgttcattagctg 15120236  T
Q  326 ttttcagcttattttcataagttctctatgatagcttacgcaaacaattt 375  Q
    |||| |||||||||| ||||| |||| ||||||||||||| |||||||||    
T  15120235 ttttaagcttattttgataagctctccatgatagcttacgaaaacaattt 15120186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 238 - 363
Target Start/End: Original strand, 36415604 - 36415728
Alignment:
Q  238 acttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttat 337  Q
    ||||||||||| ||||| |||||| | || |||||||| | ||||||||||| || ||| |||||  |||| || ||| ||||| ||||||||| |||||    
T  36415604 acttatttgaacttgtcgactgacttaaatacttgtgacattgtttgggagaacttatagaaacaacttat-acatgtgcataagttgttttcatcttat 36415702  T
Q  338 tttcataagttctctatgatagctta 363  Q
    |||| ||||||||  |||||||||||    
T  36415703 tttcgtaagttctacatgatagctta 36415728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 226 - 376
Target Start/End: Complemental strand, 8017586 - 8017436
Alignment:
Q  226 ctgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattg 325  Q
    ||||||||| ||||||||||||  || |||| |||||| |  |||||||  | | ||||||||| || ||  |||||| ||||||  ||| ||||| |||    
T  8017586 ctgtttggattgacttatttgaggttatctattgacataagcacttgtgcgattatttgggagaacttatgaaaacagcttatgatatgttcataatttg 8017487  T
Q  326 ttttcagcttattttcataagttctctatgatagcttacgcaaacaattta 376  Q
    ||||| || ||||||||||||||||| | ||||||||| | ||||| ||||    
T  8017486 ttttctgcgtattttcataagttctccaagatagcttatgaaaacagttta 8017436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 228 - 473
Target Start/End: Original strand, 43456627 - 43456877
Alignment:
Q  228 gtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgtt 327  Q
    ||||||| | ||||||||||| || | |||| |||| || |||||| | ||||||||  ||||||  |  |||||  | ||||| |||||||||| ||||    
T  43456627 gtttggatttacttatttgaacttatttactcacataaacacttgtaagactgtttgaaagagcttgtgaaaacaactcatgacatgtccataaactgtt 43456726  T
Q  328 ttcagcttattttcataagttctctatgatagcttacgcaaacaatttaactcta-----ccttttattaaaataatggcttatacataagcacatatat 422  Q
    |||||||||||| |||| ||| |  | ||||||||||  ||||||||| ||| ||     |||||| ||| || ||  |||||||||| ||||| ||| |    
T  43456727 ttcagcttatttccatatgtttttcaagatagcttacagaaacaatttgactttatatttccttttgttataaaaaaagcttatacattagcacttatgt 43456826  T
Q  423 gataagtgatcatgcaataagtgcttaactaagctgtttacccaaacaggg 473  Q
    ||||| || | |||| |||||||||||| |||| | |||| | ||||||||    
T  43456827 gataaatgcttatgctataagtgcttaattaagttttttatcgaaacaggg 43456877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 305 - 362
Target Start/End: Complemental strand, 5781742 - 5781685
Alignment:
Q  305 ttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctt 362  Q
    ||||||| ||| |||||| |||||||||||||||| |||||| |||||||||||||||    
T  5781742 ttatgacatgtgcataaactgttttcagcttatttccataagctctctatgatagctt 5781685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 305 - 370
Target Start/End: Complemental strand, 10285933 - 10285868
Alignment:
Q  305 ttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagcttacgcaaac 370  Q
    ||||||| |||||||||  |||||||| ||||||| ||||||||||||||| ||||||| ||||||    
T  10285933 ttatgacatgtccataagctgttttcaacttatttccataagttctctatgttagcttatgcaaac 10285868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 305 - 360
Target Start/End: Complemental strand, 10285428 - 10285373
Alignment:
Q  305 ttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagc 360  Q
    ||||||| |||||||||  |||||||||||||||||| |||||| |||||||||||    
T  10285428 ttatgacatgtccataagctgttttcagcttattttcttaagttatctatgatagc 10285373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 342
Target Start/End: Original strand, 1494414 - 1494480
Alignment:
Q  276 tactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttca 342  Q
    ||||||||| ||||||| ||  |||||| ||||||| |||||||||| |||||| ||||||||||||    
T  1494414 tactgtttgagagagcttatgaaaacagcttatgacatgtccataaactgtttttagcttattttca 1494480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 337
Target Start/End: Original strand, 33197180 - 33197290
Alignment:
Q  227 tgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgt 326  Q
    |||||||| |||||||||||| ||| || ||||||||| | |||||||| ||| |||| ||||| | ||||| |||||||| ||  ||||||| |  ||     
T  33197180 tgtttggattgacttatttgagtttatcaactgacattgatacttgtgagactatttgagagaggttatatagacagtttacgatatgtccatgacctgc 33197279  T
Q  327 tttcagcttat 337  Q
    |||||||||||    
T  33197280 tttcagcttat 33197290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 285 - 363
Target Start/End: Original strand, 35378993 - 35379071
Alignment:
Q  285 ggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 363  Q
    |||||||| ||  |||||| | ||||| ||| ||||| |||||||||||||||||||||||| |||| | |||||||||    
T  35378993 ggagagcttatgaaaacagctgatgacttgttcataagttgttttcagcttattttcataagctctccaagatagctta 35379071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 268 - 345
Target Start/End: Complemental strand, 9996848 - 9996771
Alignment:
Q  268 acttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataa 345  Q
    |||||||| |||| ||||||||||| ||| |||||  ||||||| |  |||||||||||| ||| |||||||||||||    
T  9996848 acttgtgagactgcttgggagagcttatagaaacaacttatgacatacccataaattgttctcaacttattttcataa 9996771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 277 - 346
Target Start/End: Complemental strand, 11063589 - 11063520
Alignment:
Q  277 actgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataag 346  Q
    ||||||||| |||||| ||  |||||  ||||||| ||||||||| ||||||| ||||||||||||||||    
T  11063589 actgtttggaagagcttatggaaacatattatgacatgtccataagttgtttttagcttattttcataag 11063520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 318 - 363
Target Start/End: Complemental strand, 42458008 - 42457963
Alignment:
Q  318 ataaattgttttcagcttattttcataagttctctatgatagctta 363  Q
    |||| |||||||||||||||||||||| |||||||| |||||||||    
T  42458008 ataagttgttttcagcttattttcatatgttctctaagatagctta 42457963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 351
Target Start/End: Original strand, 5902479 - 5902592
Alignment:
Q  236 tgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagctt 335  Q
    ||||||||||||| || ||||  | ||| || |||||||| ||||||||| ||| || ||  |||||| ||||||| ||| |||||| ||||||||||||    
T  5902479 tgacttatttgaacttatcta--ggcataaacacttgtgagactgtttggaagaacttatgaaaacagcttatgacatgttcataaactgttttcagctt 5902576  T
Q  336 attttcataagttctc 351  Q
     |||| ||| ||||||    
T  5902577 gtttttatatgttctc 5902592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 253 - 349
Target Start/End: Complemental strand, 18884992 - 18884896
Alignment:
Q  253 tctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttc 349  Q
    |||| |||||| | ||||||| |  ||||||||||||||| ||| |||||| ||||||| | ||||| |  ||||||||| |||||| |||||||||    
T  18884992 tctattgacataagaacttgtaaggctgtttgggagagcttatagaaacagcttatgacatttccattagctgttttcagattatttccataagttc 18884896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 351
Target Start/End: Complemental strand, 40158877 - 40158745
Alignment:
Q  219 tatggtactgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtcca 318  Q
    |||||| || |||||| || |||||||||   | ||||||||||| | ||||||||| |||| ||||| || || ||  |||||| ||||||| |||  |    
T  40158877 tatggttctatttggattggcttatttgagcatatctactgacataagaacttgtgagactgattgggggaacttatgaaaacagcttatgacatgttta 40158778  T
Q  319 taaattgttttcagcttattttcataagttctc 351  Q
    ||| |||||||||||||| || |||||| ||||    
T  40158777 taagttgttttcagcttaattacataagctctc 40158745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 342
Target Start/End: Original strand, 5759535 - 5759609
Alignment:
Q  268 acttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgt-tttcagcttattttca 342  Q
    |||||||| |||||||||||||||| ||  |||||| ||| ||| ||||||||| |||| ||||||||||||||||    
T  5759535 acttgtgagactgtttgggagagcttatggaaacagctta-gacatgtccataagttgtgtttcagcttattttca 5759609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 360
Target Start/End: Original strand, 7928308 - 7928351
Alignment:
Q  317 cataaattgttttcagcttattttcataagttctctatgatagc 360  Q
    ||||| ||||||||||||||||||||||||||||| | ||||||    
T  7928308 cataagttgttttcagcttattttcataagttctccaagatagc 7928351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 375
Target Start/End: Original strand, 12313133 - 12313240
Alignment:
Q  268 acttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagcttacgca 367  Q
    |||||||| | |||||||||||  | ||  |||||| ||||| | ||| ||||| ||| ||||| |||||||||||||| |||| | ||||||||| | |    
T  12313133 acttgtgagattgtttgggagaatttatgaaaacagcttatgccatgttcataagttgatttcaccttattttcataagctctccaagatagcttatgta 12313232  T
Q  368 aacaattt 375  Q
    ||||||||    
T  12313233 aacaattt 12313240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 361
Target Start/End: Original strand, 29316765 - 29316828
Alignment:
Q  298 aaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagct 361  Q
    |||||| ||||||| ||| ||||| || |||||||||||||| ||||||||||| | |||||||    
T  29316765 aaacagcttatgacatgttcataagttcttttcagcttatttccataagttctccaagatagct 29316828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 344
Target Start/End: Complemental strand, 33256837 - 33256774
Alignment:
Q  281 tttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcata 344  Q
    |||||||||||| ||  |||||| ||||||| ||| |||||| |||| ||||||||||||||||    
T  33256837 tttgggagagcttatgaaaacagcttatgacatgttcataaactgttctcagcttattttcata 33256774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 372
Target Start/End: Complemental strand, 40279472 - 40279413
Alignment:
Q  313 tgtccataaattgttttcagcttattttcataagttctctatgatagcttacgcaaacaa 372  Q
    |||||||||| |||||||| ||||||||||||||||||| |  |||||||| | ||||||    
T  40279472 tgtccataaactgttttcaacttattttcataagttctccaatatagcttatgaaaacaa 40279413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 372
Target Start/End: Original strand, 43065447 - 43065514
Alignment:
Q  305 ttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagcttacgcaaacaa 372  Q
    ||||||| |||||||||||||||||||||||||||  ||||| |||| | |||| |||| | ||||||    
T  43065447 ttatgacatgtccataaattgttttcagcttatttcaataagctctccacgataacttatgaaaacaa 43065514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 373
Target Start/End: Complemental strand, 45229563 - 45229516
Alignment:
Q  326 ttttcagcttattttcataagttctctatgatagcttacgcaaacaat 373  Q
    |||||||||||||||||||||||||| | ||||||||| | |||||||    
T  45229563 ttttcagcttattttcataagttctcgaagatagcttatgaaaacaat 45229516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 371
Target Start/End: Original strand, 1893278 - 1893344
Alignment:
Q  305 ttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagcttacgcaaaca 371  Q
    ||||||| ||| ||||| || ||||||||||||||||| |||||||| | |||||||| || |||||    
T  1893278 ttatgacatgtacataagttattttcagcttattttcacaagttctccaagatagcttccgaaaaca 1893344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 379
Target Start/End: Original strand, 3227692 - 3227754
Alignment:
Q  317 cataaattgttttcagcttattttcataagttctctatgatagcttacgcaaacaatttaact 379  Q
    |||||||||||||||||||||||||| ||  |||| |  |||||||| | |||||||||||||    
T  3227692 cataaattgttttcagcttattttcaaaatctctccaaaatagcttatgaaaacaatttaact 3227754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 359
Target Start/End: Complemental strand, 5826290 - 5826236
Alignment:
Q  305 ttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatag 359  Q
    ||||||| ||| |||||| |||||||||||||||| | |||| ||||||||||||    
T  5826290 ttatgacatgtgcataaactgttttcagcttatttacgtaagctctctatgatag 5826236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 346
Target Start/End: Original strand, 36236450 - 36236480
Alignment:
Q  316 ccataaattgttttcagcttattttcataag 346  Q
    |||||||||||||||||||||||||||||||    
T  36236450 ccataaattgttttcagcttattttcataag 36236480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 363
Target Start/End: Original strand, 41293124 - 41293218
Alignment:
Q  270 ttgtgatactgtttgggagagctgatataaacagtttatgacgtgtc-cataaattgttttcagcttattttcataagttctctatgatagctta 363  Q
    |||||| ||| ||||||||| || ||| |||||| ||||||| | || |||||  |||||||||||||| ||||||||| ||| | |||||||||    
T  41293124 ttgtgagactatttgggagaacttataaaaacagcttatgacatttcgcataagctgttttcagcttatattcataagtactccaggatagctta 41293218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 347
Target Start/End: Original strand, 44606107 - 44606149
Alignment:
Q  305 ttatgacgtgtccataaattgttttcagcttattttcataagt 347  Q
    ||||||| ||||||||| |||||||||||| ||||||||||||    
T  44606107 ttatgacatgtccataagttgttttcagctgattttcataagt 44606149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 363
Target Start/End: Complemental strand, 680583 - 680518
Alignment:
Q  298 aaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 363  Q
    |||||| ||||||| |||  ||||| ||||||||||||||||||| |||||||  | |||||||||    
T  680583 aaacagcttatgacatgtttataaactgttttcagcttattttcacaagttcttcaagatagctta 680518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 337
Target Start/End: Complemental strand, 787442 - 787373
Alignment:
Q  268 acttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttat 337  Q
    |||||||| |||||||| |||| || ||  |||||| ||||||| |||||||||  ||||||||||||||    
T  787442 acttgtgacactgtttgtgagaacttatgaaaacagcttatgacatgtccataagctgttttcagcttat 787373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 363
Target Start/End: Complemental strand, 1647316 - 1647251
Alignment:
Q  298 aaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 363  Q
    |||||| ||||||| ||  |||||  |||||||||||||||| |||||| ||||||| ||||||||    
T  1647316 aaacagcttatgacatgctcataagctgttttcagcttatttccataagctctctataatagctta 1647251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 362
Target Start/End: Complemental strand, 3611287 - 3611242
Alignment:
Q  317 cataaattgttttcagcttattttcataagttctctatgatagctt 362  Q
    |||||| |||||| ||||||||||||||||||||| | ||||||||    
T  3611287 cataaactgtttttagcttattttcataagttctccaagatagctt 3611242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 471
Target Start/End: Complemental strand, 4550726 - 4550657
Alignment:
Q  402 cttatacataagcacatatatgataagtgatcatgcaataagtgcttaactaagctgtttacccaaacag 471  Q
    ||||||||||||||| ||| ||||||| ||| |||| ||||||  |||| |||| |||||| ||||||||    
T  4550726 cttatacataagcacttatgtgataagagattatgctataagttgttaattaagttgtttatccaaacag 4550657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 351
Target Start/End: Original strand, 5902602 - 5902655
Alignment:
Q  298 aaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctc 351  Q
    |||||| ||||||||||| |||||| ||||||||||||  ||| ||||||||||    
T  5902602 aaacagcttatgacgtgttcataaactgttttcagcttgattttataagttctc 5902655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 346
Target Start/End: Complemental strand, 12147530 - 12147489
Alignment:
Q  305 ttatgacgtgtccataaattgttttcagcttattttcataag 346  Q
    ||||||| ||| |||||||||||||||| |||||||||||||    
T  12147530 ttatgacatgttcataaattgttttcagtttattttcataag 12147489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 363
Target Start/End: Complemental strand, 33192282 - 33192217
Alignment:
Q  298 aaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 363  Q
    |||||||||||||| | |||||||  |||||||||||||| || ||||| |||| | |||||||||    
T  33192282 aaacagtttatgacatatccataagctgttttcagcttatatttataagctctccaggatagctta 33192217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 351
Target Start/End: Original strand, 42621365 - 42621418
Alignment:
Q  298 aaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctc 351  Q
    ||||||||| |||| ||||  ||| |||||||||||||||||||| ||||||||    
T  42621365 aaacagtttttgacatgtctgtaagttgttttcagcttattttcacaagttctc 42621418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 471
Target Start/End: Original strand, 43635221 - 43635290
Alignment:
Q  402 cttatacataagcacatatatgataagtgatcatgcaataagtgcttaactaagctgtttacccaaacag 471  Q
    |||||||||||||   || |||||||||| | |||| |||||||||||| ||||||||||| | ||||||    
T  43635221 cttatacataagcgattacatgataagtgcttatgctataagtgcttaattaagctgtttatctaaacag 43635290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 345
Target Start/End: Complemental strand, 15978046 - 15978018
Alignment:
Q  317 cataaattgttttcagcttattttcataa 345  Q
    |||||||||||||||||||||||||||||    
T  15978046 cataaattgttttcagcttattttcataa 15978018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 332 - 376
Target Start/End: Complemental strand, 37474802 - 37474758
Alignment:
Q  332 gcttattttcataagttctctatgatagcttacgcaaacaattta 376  Q
    ||||||| ||||||||||||||||||||||||   ||||||||||    
T  37474802 gcttattatcataagttctctatgatagcttagaaaaacaattta 37474758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 277 - 321
Target Start/End: Original strand, 39962268 - 39962312
Alignment:
Q  277 actgtttgggagagctgatataaacagtttatgacgtgtccataa 321  Q
    |||||||||||||||| ||| ||||| |||||||| |||||||||    
T  39962268 actgtttgggagagcttatagaaacaatttatgacatgtccataa 39962312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 363
Target Start/End: Complemental strand, 44443396 - 44443336
Alignment:
Q  303 gtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 363  Q
    ||||||||  ||| ||||| |||||||||||||||||||||| | |||| | |||||||||    
T  44443396 gtttatgaaatgttcataagttgttttcagcttattttcatatgctctcaaagatagctta 44443336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 59)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 226 - 350
Target Start/End: Original strand, 30815572 - 30815695
Alignment:
Q  226 ctgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattg 325  Q
    |||||||||||| |||||||||  || ||||||  ||| | |||| | |||| ||||||| |||||| |||||||||| ||||||| ||| |||||| ||    
T  30815572 ctgtttggaatggcttatttgaggttatctactagcataagaactagcgatagtgtttgg-agagcttatataaacagcttatgacatgttcataaaatg 30815670  T
Q  326 ttttcagcttattttcataagttct 350  Q
    |||||||||||||||||||||||||    
T  30815671 ttttcagcttattttcataagttct 30815695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 230 - 363
Target Start/End: Original strand, 10199330 - 10199463
Alignment:
Q  230 ttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgtttt 329  Q
    ||||| ||||||||||||  || |||||| |||| |  |||||||| ||| ||||||||| || ||  ||| || ||||||| ||| ||||| |||||||    
T  10199330 ttggattgacttatttgagcttatctactaacataagcacttgtgacactatttgggagaactcatgaaaatagcttatgacatgttcataagttgtttt 10199429  T
Q  330 cagcttattttcataagttctctatgatagctta 363  Q
    ||||||||||||||||| ||||||  ||||||||    
T  10199430 cagcttattttcataagctctctaaaatagctta 10199463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 298 - 363
Target Start/End: Complemental strand, 27140558 - 27140493
Alignment:
Q  298 aaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 363  Q
    |||||| ||||||| ||||||||| ||||||||||||||||| |||||| |||| |||||||||||    
T  27140558 aaacagcttatgacatgtccataagttgttttcagcttatttgcataagctctccatgatagctta 27140493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 305 - 363
Target Start/End: Complemental strand, 3224496 - 3224438
Alignment:
Q  305 ttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 363  Q
    ||||||| ||||||||| ||||| |||||||||||||||||||||||||  ||||||||    
T  3224496 ttatgacatgtccataagttgttctcagcttattttcataagttctctagaatagctta 3224438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 226 - 372
Target Start/End: Original strand, 12564417 - 12564563
Alignment:
Q  226 ctgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattg 325  Q
    ||||||| | ||||||||||||  || | |||||| || |  |||||||  |||||||||||||||| |  || | || |||||||  ||| |||| |||    
T  12564417 ctgtttgaattgacttatttgagcttatatactgatataagcacttgtgtgactgtttgggagagcttacgtatatagcttatgacaagtcaataagttg 12564516  T
Q  326 ttttcagcttattttcataagttctctatgatagcttacgcaaacaa 372  Q
    |||||||||||||| ||||||||||| | ||||||||| | ||||||    
T  12564517 ttttcagcttatttccataagttctccaagatagcttatgaaaacaa 12564563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 241 - 363
Target Start/End: Original strand, 32515374 - 32515496
Alignment:
Q  241 tatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttatttt 340  Q
    ||||||| ||| |||||| |||| |  |||||||| |||||||||||||||| ||  ||||||  |||||| |||| |||| ||||||||| ||||| |     
T  32515374 tatttgagtttatctactaacataagcacttgtgagactgtttgggagagcttatggaaacagcgtatgacatgtcaataagttgttttcaacttatatc 32515473  T
Q  341 cataagttctctatgatagctta 363  Q
     ||||| |||| |||||||||||    
T  32515474 tataagctctccatgatagctta 32515496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 229 - 302
Target Start/End: Complemental strand, 5157221 - 5157148
Alignment:
Q  229 tttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaaca 302  Q
    |||||| ||||||||||||| || ||||| ||||| || |||||||| |||||||||||||||| ||| |||||    
T  5157221 tttggattgacttatttgaacttatctacggacataaacacttgtgaaactgtttgggagagcttatagaaaca 5157148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 226 - 339
Target Start/End: Original strand, 23373231 - 23373343
Alignment:
Q  226 ctgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattg 325  Q
    ||||||| | ||||||||||||| ||||||||||| || |  |||||||| | |||||||||||||| ||| |||||  ||||||| ||||||  |  ||    
T  23373231 ctgtttgaattgacttatttgaacttgtctactgatataagcacttgtgagattgtttgggagagcttatagaaacaacttatgacatgtcca-catctg 23373329  T
Q  326 ttttcagcttattt 339  Q
    ||||||||||||||    
T  23373330 ttttcagcttattt 23373343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 298 - 363
Target Start/End: Original strand, 28689442 - 28689507
Alignment:
Q  298 aaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 363  Q
    |||||| ||||||| ||||||||| |||||||||||||||||||||||| | || | |||||||||    
T  28689442 aaacagcttatgacatgtccataagttgttttcagcttattttcataagctttccaagatagctta 28689507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 299 - 376
Target Start/End: Original strand, 36151496 - 36151573
Alignment:
Q  299 aacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagcttacgcaaacaattta 376  Q
    ||||||||||||| |||||||||  |||||||| |||||||||||||| || ||| ||| | ||||| ||||||||||    
T  36151496 aacagtttatgacatgtccataacctgttttcaacttattttcataagctcactaggattgtttacgaaaacaattta 36151573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 278 - 363
Target Start/End: Original strand, 37941955 - 37942040
Alignment:
Q  278 ctgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 363  Q
    ||||||| ||||||| ||| ||||| |||||||| ||||||||| ||||| || |||||||||| |||| || | |||||||||||    
T  37941955 ctgtttgagagagcttatagaaacaatttatgacatgtccataagttgttctcggcttattttcttaagctcccaatgatagctta 37942040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 317 - 362
Target Start/End: Original strand, 47885042 - 47885087
Alignment:
Q  317 cataaattgttttcagcttattttcataagttctctatgatagctt 362  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||    
T  47885042 cataagttgttttcagcttatttccataagttctctatgatagctt 47885087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 227 - 351
Target Start/End: Complemental strand, 6292643 - 6292520
Alignment:
Q  227 tgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgt 326  Q
    |||||||| ||||||||||||  || ||||||||||| |  |||| ||| | |||||||||||  |  || |||||| ||||||| ||| |||||  |||    
T  6292643 tgtttggattgacttatttgagcttatctactgacataagcacttttgagattgtttgggagaattttta-aaacagcttatgacatgttcataagctgt 6292545  T
Q  327 tttcagcttattttcataagttctc 351  Q
    |||||||||||||||||||| ||||    
T  6292544 tttcagcttattttcataagctctc 6292520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 346
Target Start/End: Original strand, 28935838 - 28935914
Alignment:
Q  270 ttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataag 346  Q
    |||||| |||||||||||||||| ||| |  ||||||||||| ||||||||| || |||| ||||||||| ||||||    
T  28935838 ttgtgagactgtttgggagagcttatagagtcagtttatgacatgtccataagttttttttagcttatttccataag 28935914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 305 - 352
Target Start/End: Original strand, 15687083 - 15687130
Alignment:
Q  305 ttatgacgtgtccataaattgttttcagcttattttcataagttctct 352  Q
    ||||||| |||||||||||||||||||||||||| ||||||| |||||    
T  15687083 ttatgacatgtccataaattgttttcagcttattgtcataagctctct 15687130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 305 - 372
Target Start/End: Complemental strand, 25479654 - 25479587
Alignment:
Q  305 ttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagcttacgcaaacaa 372  Q
    ||||||| ||| ||| | |||||||||||||||||||||||| |||||| ||||||||| | ||||||    
T  25479654 ttatgacatgttcattagttgttttcagcttattttcataagctctctaggatagcttatgaaaacaa 25479587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 325 - 372
Target Start/End: Complemental strand, 34952268 - 34952221
Alignment:
Q  325 gttttcagcttattttcataagttctctatgatagcttacgcaaacaa 372  Q
    |||||||||||||||||||||||||||| |||||||||| | ||||||    
T  34952268 gttttcagcttattttcataagttctctttgatagcttatgaaaacaa 34952221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 255 - 346
Target Start/End: Original strand, 38170637 - 38170728
Alignment:
Q  255 tactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataag 346  Q
    ||||| ||| || |||||||| |||| ||||||||||| ||  |||||| ||||||| ||| ||||| ||||||||||||| ||||| ||||    
T  38170637 tactggcatgaacacttgtgagactgcttgggagagcttatgaaaacagcttatgacatgttcataagttgttttcagcttgttttcctaag 38170728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 226 - 313
Target Start/End: Original strand, 44375277 - 44375364
Alignment:
Q  226 ctgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgt 313  Q
    ||||||||| ||||||||||||| || |||||||||||||| |||||  |  |||||||| |||| | ||| |||||| |||||||||    
T  44375277 ctgtttggagtgacttatttgaacttatctactgacattaacacttgcaaacctgtttggaagagtttatagaaacagattatgacgt 44375364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 376
Target Start/End: Original strand, 11639406 - 11639484
Alignment:
Q  298 aaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagcttacgcaaacaattta 376  Q
    |||||| ||||||| |||||||||  |||||| |||||||||||||||| ||||||  ||| |||| ||||||| ||||    
T  11639406 aaacagcttatgacatgtccataagctgtttttagcttattttcataagctctctagaataacttatgcaaacagttta 11639484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 278 - 363
Target Start/End: Complemental strand, 6279499 - 6279414
Alignment:
Q  278 ctgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 363  Q
    ||||||| ||||||| ||  |||||||| |  || ||||||||| ||||||||||| ||||| |||||| |||||| |||||||||    
T  6279499 ctgtttgagagagcttatggaaacagttaaccacatgtccataagttgttttcagcgtatttccataagctctctaggatagctta 6279414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 236 - 345
Target Start/End: Complemental strand, 15579624 - 15579515
Alignment:
Q  236 tgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagctt 335  Q
    ||||||| |||||||| ||||||  ||| | ||||||  | ||||||||||||||||  |  |||||  ||||||| ||||||||| ||||| |||||||    
T  15579624 tgacttaattgaatttatctactagcataagaacttgcaagactgtttgggagagcttgtggaaacaacttatgacatgtccataagttgttctcagctt 15579525  T
Q  336 attttcataa 345  Q
    |||| |||||    
T  15579524 atttccataa 15579515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 302 - 363
Target Start/End: Original strand, 16981930 - 16981991
Alignment:
Q  302 agtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 363  Q
    |||||||||| ||||||||| ||||||| |||||||||  ||||| |||| |||||||||||    
T  16981930 agtttatgacatgtccataagttgtttttagcttatttatataagctctccatgatagctta 16981991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 227 - 320
Target Start/End: Complemental strand, 34536309 - 34536216
Alignment:
Q  227 tgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccata 320  Q
    ||||||||||||||||||||||  | |||| |||||| || |||||||| |||||||| ||  ||| ||  |||||| ||||||| ||||||||    
T  34536309 tgtttggaatgacttatttgaacgtatctattgacataaacacttgtgagactgtttgagatggcttatgaaaacagcttatgacatgtccata 34536216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 270 - 351
Target Start/End: Original strand, 41195155 - 41195236
Alignment:
Q  270 ttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctc 351  Q
    |||||||||||||||||||| ||  |||||| || ||||||| | |  ||||  | ||||||||||||||||||||||||||    
T  41195155 ttgtgatactgtttgggagaacttttataaatagcttatgacattttaataagcttttttcagcttattttcataagttctc 41195236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 365
Target Start/End: Original strand, 3319930 - 3319989
Alignment:
Q  305 ttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagcttacg 365  Q
    ||||||| ||||||||  ||||||||||||||| | |||||| ||||||||||||||||||    
T  3319930 ttatgacatgtccatag-ttgttttcagcttatatccataagatctctatgatagcttacg 3319989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 346
Target Start/End: Complemental strand, 11695941 - 11695893
Alignment:
Q  298 aaacagtttatgacgtgtccataaattgttttcagcttattttcataag 346  Q
    |||||||||||||| |||||||||  |||||||| ||||||||||||||    
T  11695941 aaacagtttatgacatgtccataagctgttttcaacttattttcataag 11695893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 376
Target Start/End: Complemental strand, 17420313 - 17420205
Alignment:
Q  268 acttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagcttacgca 367  Q
    |||||| | ||||||| | |||||| ||  |||||  |||| || ||||||||||||||||||| ||||||| ||| |||| |||  ||||||||||| |    
T  17420313 acttgttagactgttttgaagagcttatgaaaacaacttattacatgtccataaattgttttcaacttatttccattagttttctgagatagcttacgaa 17420214  T
Q  368 aacaattta 376  Q
    |||| ||||    
T  17420213 aacagttta 17420205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 361
Target Start/End: Original strand, 22813615 - 22813663
Alignment:
Q  313 tgtccataaattgttttcagcttattttcataagttctctatgatagct 361  Q
    ||||||||| ||||||| ||||| ||||||||||||||||| |||||||    
T  22813615 tgtccataagttgttttgagctttttttcataagttctctacgatagct 22813663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 362
Target Start/End: Original strand, 30259456 - 30259540
Alignment:
Q  278 ctgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctt 362  Q
    |||||||  |||||| ||| |||||  ||| ||| |||| |||||||||||||| ||||||| |||||| |||| ||||||||||    
T  30259456 ctgtttgaaagagcttatagaaacaacttacgacatgtcaataaattgttttcaacttatttccataagctctccatgatagctt 30259540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 346
Target Start/End: Original strand, 33723300 - 33723420
Alignment:
Q  226 ctgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattg 325  Q
    ||||||||| ||||||||||||| || ||||||  ||| || |||||||| |||| |||||| | || ||  |||||| | ||||| ||| ||| |  ||    
T  33723300 ctgtttggattgacttatttgaacttatctactaccataaacacttgtgagactgcttgggaaaacttatggaaacagctcatgacatgttcatgagatg 33723399  T
Q  326 ttttcagcttattttcataag 346  Q
    |||||||||||||| ||||||    
T  33723400 ttttcagcttatttccataag 33723420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 38503474 - 38503518
Alignment:
Q  317 cataaattgttttcagcttattttcataagttctctatgatagct 361  Q
    ||||| ||||||||||||||||||||||||||||| | |||||||    
T  38503474 cataagttgttttcagcttattttcataagttctccaagatagct 38503518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 345
Target Start/End: Original strand, 3597199 - 3597318
Alignment:
Q  226 ctgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattg 325  Q
    ||||||||| ||||||||||||  || |||| ||| || |  |||||||| ||||||||| |||| ||||| ||| |  ||||||| || ||||||  |     
T  3597199 ctgtttggattgacttatttgaggttatctaatgatataaccacttgtgagactgtttggaagagttgataaaaataacttatgacatggccataagcta 3597298  T
Q  326 ttttcagcttattttcataa 345  Q
    |||||||||||||| |||||    
T  3597299 ttttcagcttatttccataa 3597318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 346
Target Start/End: Complemental strand, 4868550 - 4868432
Alignment:
Q  227 tgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgt 326  Q
    |||||||| ||| |||||||||||| |||| ||||||    |||||||| |||||||| ||||| | ||  |||||  ||||||| |||| |||| ||||    
T  4868550 tgtttggattgatttatttgaatttatctattgacataggcacttgtgagactgtttgagagagtttat-gaaacaacttatgacatgtcaataagttgt 4868452  T
Q  327 tttcagcttattttcataag 346  Q
    ||||| ||||||| ||||||    
T  4868451 tttcaacttatttacataag 4868432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 372
Target Start/End: Original strand, 27887115 - 27887182
Alignment:
Q  305 ttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagcttacgcaaacaa 372  Q
    ||||||| ||||||||||||||||| |||||||||| ||| | |||| ||||||| ||| | ||||||    
T  27887115 ttatgacatgtccataaattgtttttagcttatttttatatgctctccatgatagtttatgaaaacaa 27887182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 351
Target Start/End: Original strand, 31517700 - 31517783
Alignment:
Q  268 acttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctc 351  Q
    |||||||| ||||||||||||| || ||  |||||  | ||||| ||| |||||  ||||||||||||||||||||||| ||||    
T  31517700 acttgtgagactgtttgggagaacttatcaaaacaactcatgacatgttcataagctgttttcagcttattttcataagctctc 31517783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 351
Target Start/End: Original strand, 5886991 - 5887037
Alignment:
Q  305 ttatgacgtgtccataaattgttttcagcttattttcataagttctc 351  Q
    ||||||| ||| ||||| ||||||||||||||||||| |||||||||    
T  5886991 ttatgacatgttcataagttgttttcagcttattttcgtaagttctc 5887037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 363
Target Start/End: Original strand, 7137007 - 7137053
Alignment:
Q  317 cataaattgttttcagcttattttcataagttctctatgatagctta 363  Q
    ||||| || |||||||||||||||||||||||||| | |||||||||    
T  7137007 cataagttattttcagcttattttcataagttctccaagatagctta 7137053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 363
Target Start/End: Original strand, 12477284 - 12477342
Alignment:
Q  305 ttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 363  Q
    ||||||| ||||||||| ||||||||||||||||| ||||   |||| |||||||||||    
T  12477284 ttatgacatgtccataagttgttttcagcttatttccatacactctccatgatagctta 12477342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 284
Target Start/End: Original strand, 24460319 - 24460377
Alignment:
Q  226 ctgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttg 284  Q
    ||||||||| ||||||||||||| || ||||||||||| |  |||||||| ||||||||    
T  24460319 ctgtttggattgacttatttgaacttatctactgacatgagcacttgtgagactgtttg 24460377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 363
Target Start/End: Original strand, 28262624 - 28262674
Alignment:
Q  313 tgtccataaattgttttcagcttattttcataagttctctatgatagctta 363  Q
    ||||||||||||||||| ||||||||| |||||||||| || |||| ||||    
T  28262624 tgtccataaattgtttttagcttatttccataagttctataggataactta 28262674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 351
Target Start/End: Original strand, 28482142 - 28482276
Alignment:
Q  217 attatggtactgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtc 316  Q
    ||||||| | ||||| |||||||||||||||| || |||||||||||   ||||||||| | |||| |  |||||| ||| |||||  ||||||  | |     
T  28482142 attatgggaatgtttagaatgacttatttgaacttatctactgacatacgaacttgtgagattgttcgatagagctcatagaaacatcttatgatatatt 28482241  T
Q  317 cataaattgttttcagcttattttcataagttctc 351  Q
    |||||| | |||| ||||||||||| |||| ||||    
T  28482242 cataaactatttttagcttattttcgtaagctctc 28482276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 359
Target Start/End: Complemental strand, 33975635 - 33975589
Alignment:
Q  313 tgtccataaattgttttcagcttattttcataagttctctatgatag 359  Q
    |||||||||| | ||||||||||||||||||||| |||||| |||||    
T  33975635 tgtccataaactattttcagcttattttcataagctctctaggatag 33975589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 363
Target Start/End: Complemental strand, 34290297 - 34290251
Alignment:
Q  317 cataaattgttttcagcttattttcataagttctctatgatagctta 363  Q
    ||||| ||||||||||||||||||||||||||||  | |||||||||    
T  34290297 cataagttgttttcagcttattttcataagttcttcaagatagctta 34290251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 363
Target Start/End: Original strand, 46252679 - 46252737
Alignment:
Q  305 ttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 363  Q
    ||||||| ||| ||||| |||||||||| ||||||||||||| |||| | |||||||||    
T  46252679 ttatgacatgttcataagttgttttcaggttattttcataagctctccaagatagctta 46252737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 372
Target Start/End: Complemental strand, 49888819 - 49888773
Alignment:
Q  326 ttttcagcttattttcataagttctctatgatagcttacgcaaacaa 372  Q
    ||||| |||||||||||||||||||||| ||||||||| | ||||||    
T  49888819 ttttcggcttattttcataagttctctaagatagcttatgaaaacaa 49888773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 351
Target Start/End: Original strand, 4768819 - 4768872
Alignment:
Q  298 aaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctc 351  Q
    |||||| ||| ||| ||||||||| ||||||||||||||||| ||||| |||||    
T  4768819 aaacagcttacgacatgtccataacttgttttcagcttatttccataaattctc 4768872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 345
Target Start/End: Complemental strand, 29723599 - 29723522
Alignment:
Q  268 acttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataa 345  Q
    ||||||||||| |||||  ||| || ||  |||||| ||||||| |||||||||| |||||||| ||||||| |||||    
T  29723599 acttgtgatacagtttgaaagaactaatggaaacagcttatgacatgtccataaactgttttcaacttatttacataa 29723522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 363
Target Start/End: Complemental strand, 37811960 - 37811867
Alignment:
Q  270 ttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 363  Q
    ||||||||||| ||| |||| || ||  |||||| ||||||| ||| |||||| |||||||| ||||||| ||| || |||| ||||| |||||    
T  37811960 ttgtgatactggttgagagaacttatgaaaacagcttatgacatgttcataaactgttttcaacttatttccattagctctccatgatggctta 37811867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 335
Target Start/End: Complemental strand, 38001704 - 38001639
Alignment:
Q  270 ttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagctt 335  Q
    |||||| ||||||||||||| || ||  |||||| ||||||| ||| ||||| |||||||||||||    
T  38001704 ttgtgagactgtttgggagaacttatgaaaacagcttatgacctgttcataagttgttttcagctt 38001639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 350
Target Start/End: Original strand, 38867751 - 38867873
Alignment:
Q  226 ctgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattg 325  Q
    |||||||||  ||| ||||||| | | |||| |||||| || ||||||||  ||||||| ||||||| ||  ||| |  ||||||  ||||||| | |||    
T  38867751 ctgtttggatggacgtatttgagtctatctaatgacataaacacttgtga--ctgtttgagagagcttatggaaataacttatgatatgtccatcagttg 38867848  T
Q  326 ttttcagcttattttcataagttct 350  Q
    |||| ||||||||||||||||||||    
T  38867849 tttttagcttattttcataagttct 38867873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 362
Target Start/End: Complemental strand, 49175692 - 49175635
Alignment:
Q  305 ttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctt 362  Q
    ||||| |||||| || | ||||||||||||||||| ||||||||||  ||||||||||    
T  49175692 ttatgtcgtgtctatcagttgttttcagcttatttccataagttctacatgatagctt 49175635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 346
Target Start/End: Complemental strand, 4549310 - 4549262
Alignment:
Q  298 aaacagtttatgacgtgtccataaattgttttcagcttattttcataag 346  Q
    ||||| |||||||| |||| |||| ||||||||||||||||| ||||||    
T  4549310 aaacaatttatgacatgtctataagttgttttcagcttatttccataag 4549262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #54
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 307 - 371
Target Start/End: Original strand, 6231815 - 6231879
Alignment:
Q  307 atgacgtgtccataaattgttttcagcttattttcataagttctctatgatagcttacgcaaaca 371  Q
    ||||| |||||||||| ||||||||||||||||  |||||||||  | | ||||||||| |||||    
T  6231815 atgacatgtccataaactgttttcagcttatttctataagttcttcaggttagcttacgaaaaca 6231879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #55
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 403 - 463
Target Start/End: Complemental strand, 6659651 - 6659591
Alignment:
Q  403 ttatacataagcacatatatgataagtgatcatgcaataagtgcttaactaagctgtttac 463  Q
    |||||||||||||| |||||||||| || | ||||  ||||||||||| ||| ||||||||    
T  6659651 ttatacataagcacttatatgataattgctgatgccttaagtgcttaattaaactgtttac 6659591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #56
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 346
Target Start/End: Original strand, 7761601 - 7761649
Alignment:
Q  298 aaacagtttatgacgtgtccataaattgttttcagcttattttcataag 346  Q
    ||||| |||||||| ||||||||| || ||||||||||||||| |||||    
T  7761601 aaacaatttatgacatgtccataagtttttttcagcttattttgataag 7761649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #57
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 363
Target Start/End: Complemental strand, 23402086 - 23402046
Alignment:
Q  323 ttgttttcagcttattttcataagttctctatgatagctta 363  Q
    ||||||||||||||||| |||||| |||| |||||||||||    
T  23402086 ttgttttcagcttatttccataagctctcgatgatagctta 23402046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #58
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 363
Target Start/End: Original strand, 35590907 - 35590947
Alignment:
Q  323 ttgttttcagcttattttcataagttctctatgatagctta 363  Q
    ||||||||||||||||| |||||| |||| |||||||||||    
T  35590907 ttgttttcagcttatttccataagctctccatgatagctta 35590947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #59
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 363
Target Start/End: Complemental strand, 43113186 - 43113126
Alignment:
Q  303 gtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 363  Q
    |||| |||| |||| |||||||||||| ||||||| |||||||  |||| |||||||||||    
T  43113186 gtttgtgacatgtctataaattgttttgagcttatgttcataacctctccatgatagctta 43113126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 272 - 376
Target Start/End: Complemental strand, 37273240 - 37273136
Alignment:
Q  272 gtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagcttacgcaaaca 371  Q
    |||| |||||||||||||||| ||  |||||  ||||||| ||||||||| ||||||||| ||||||| ||||||||||| | ||||||||| | |||||    
T  37273240 gtgagactgtttgggagagcttatggaaacaacttatgacatgtccataagttgttttcaacttatttccataagttctccaagatagcttatgaaaaca 37273141  T
Q  372 attta 376  Q
     ||||    
T  37273140 gttta 37273136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 306 - 372
Target Start/End: Original strand, 33883748 - 33883814
Alignment:
Q  306 tatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagcttacgcaaacaa 372  Q
    |||||| ||| ||||| ||||||||||||||||||||||||||||||| ||||||||| | ||||||    
T  33883748 tatgacatgttcataagttgttttcagcttattttcataagttctctaagatagcttatgtaaacaa 33883814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 239 - 360
Target Start/End: Complemental strand, 24624349 - 24624228
Alignment:
Q  239 cttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttatt 338  Q
    |||| ||||| || |||||| ||||||  |||||| | ||||||||| |||||| ||  |||||| ||||||| |||||||||| |||||||||||||||    
T  24624349 cttagttgaacttatctactcacattagcacttgtaagactgtttggaagagcttatgaaaacagcttatgacatgtccataaactgttttcagcttatt 24624250  T
Q  339 ttcataagttctctatgatagc 360  Q
      |||||| | |||| ||||||    
T  24624249 aacataagatttctaggatagc 24624228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 371
Target Start/End: Complemental strand, 31010540 - 31010409
Alignment:
Q  240 ttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattt 339  Q
    ||||||||| ||  ||||| |||| | |||||||||   |||||| || |||| ||| |||||  ||||||| |||||||||  ||||||||||||| ||    
T  31010540 ttatttgaacttaactactaacataagaacttgtgagtgtgtttgtgaaagcttatagaaacaacttatgacatgtccataagctgttttcagcttaatt 31010441  T
Q  340 tcataagttctctatgatagcttacgcaaaca 371  Q
     |||||| |||||||||||| ||||| |||||    
T  31010440 ccataagctctctatgataggttacgaaaaca 31010409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 300 - 363
Target Start/End: Original strand, 39602202 - 39602265
Alignment:
Q  300 acagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 363  Q
    |||| ||||||| ||| ||||||||||||||| ||||||||||||||||||| | |||||||||    
T  39602202 acagcttatgacatgttcataaattgttttcaacttattttcataagttctcaaagatagctta 39602265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 298 - 363
Target Start/End: Original strand, 1217790 - 1217855
Alignment:
Q  298 aaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 363  Q
    |||||| ||||||| ||||||||| ||||||||| |||| |||||||||||||| | |||||||||    
T  1217790 aaacagcttatgacatgtccataagttgttttcatcttactttcataagttctcaaggatagctta 1217855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 268 - 345
Target Start/End: Original strand, 32103477 - 32103554
Alignment:
Q  268 acttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataa 345  Q
    |||||||||||||||| || || ||  || ||| |||||||||| |||||||| |||||||||||||||| |||||||    
T  32103477 acttgtgatactgtttaggcgatcttttagaaaaagtttatgacatgtccatatattgttttcagcttatattcataa 32103554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 313 - 376
Target Start/End: Complemental strand, 2719533 - 2719470
Alignment:
Q  313 tgtccataaattgttttcagcttattttcataagttctctatgatagcttacgcaaacaattta 376  Q
    ||||||||| ||||| ||||||||||||||||||||||| | ||||||||| | ||||| ||||    
T  2719533 tgtccataagttgttctcagcttattttcataagttctccaagatagcttatgaaaacagttta 2719470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 268 - 359
Target Start/End: Complemental strand, 43115166 - 43115075
Alignment:
Q  268 acttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatag 359  Q
    |||||||| | ||||||| |||| | ||  |||||  ||||||| ||||||||| ||||||||||||||||| |||||| |||| |||||||    
T  43115166 acttgtgagattgtttggaagagtttatggaaacaacttatgacatgtccataacttgttttcagcttatttccataagctctcaatgatag 43115075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 326 - 363
Target Start/End: Complemental strand, 25075118 - 25075081
Alignment:
Q  326 ttttcagcttattttcataagttctctatgatagctta 363  Q
    |||||||||||||||||| |||||||||||||||||||    
T  25075118 ttttcagcttattttcattagttctctatgatagctta 25075081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 314 - 363
Target Start/End: Original strand, 34924544 - 34924593
Alignment:
Q  314 gtccataaattgttttcagcttattttcataagttctctatgatagctta 363  Q
    |||||||  |||||||||||||||||||||||| |||||| |||||||||    
T  34924544 gtccatatgttgttttcagcttattttcataagctctctaagatagctta 34924593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 277 - 358
Target Start/End: Original strand, 51206467 - 51206548
Alignment:
Q  277 actgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgata 358  Q
    |||||| ||||||||  ||  |||||| ||||||| | |||| || |||||||||||||||||||||||| |||| ||||||    
T  51206467 actgttagggagagcatatggaaacagcttatgacctatccaaaagttgttttcagcttattttcataagctctcaatgata 51206548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 324 - 372
Target Start/End: Complemental strand, 21367721 - 21367673
Alignment:
Q  324 tgttttcagcttattttcataagttctctatgatagcttacgcaaacaa 372  Q
    |||||||||||||||||||||||||||| | ||||||||| | ||||||    
T  21367721 tgttttcagcttattttcataagttctccaagatagcttatgaaaacaa 21367673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 362
Target Start/End: Complemental strand, 23785335 - 23785271
Alignment:
Q  298 aaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctt 362  Q
    |||||| ||||| ||||||||||| ||||||||||||| ||| |||||| |||| |||| |||||    
T  23785335 aaacagcttatggcgtgtccataagttgttttcagcttgtttccataagctctccatgagagctt 23785271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 351
Target Start/End: Complemental strand, 41633431 - 41633387
Alignment:
Q  307 atgacgtgtccataaattgttttcagcttattttcataagttctc 351  Q
    ||||| |||| ||||||||||||||||||||||||||||| ||||    
T  41633431 atgacatgtctataaattgttttcagcttattttcataagctctc 41633387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 363
Target Start/End: Complemental strand, 51130849 - 51130765
Alignment:
Q  279 tgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 363  Q
    |||||||||||||| ||  ||||  | |||||| ||||||||| ||| ||||||||||||||||  || |||| |||||||||||    
T  51130849 tgtttgggagagcttatgaaaaccatgtatgacatgtccataagttgctttcagcttattttcaatagctctccatgatagctta 51130765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 476
Target Start/End: Complemental strand, 29094331 - 29094256
Alignment:
Q  401 gcttatacataagcacatatatgataagtgatcatgcaataagtgcttaactaagctgtttacccaaacagggcct 476  Q
    |||||||||||| ||| ||||||||||||| | |||| ||||| | |||| ||||||||||||  ||| |||||||    
T  29094331 gcttatacataaacacttatatgataagtgtttatgctataagcgtttaattaagctgtttactgaaatagggcct 29094256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 363
Target Start/End: Complemental strand, 44488936 - 44488898
Alignment:
Q  325 gttttcagcttattttcataagttctctatgatagctta 363  Q
    ||||||||||||||| ||||||||||||| |||||||||    
T  44488936 gttttcagcttatttccataagttctctaagatagctta 44488898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 351
Target Start/End: Original strand, 50946295 - 50946329
Alignment:
Q  317 cataaattgttttcagcttattttcataagttctc 351  Q
    ||||||||||| |||||||||||||||||||||||    
T  50946295 cataaattgttctcagcttattttcataagttctc 50946329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 363
Target Start/End: Complemental strand, 6483873 - 6483816
Alignment:
Q  306 tatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 363  Q
    |||||| || ||| ||| ||||||||||||||||| ||||| |||||| |||||||||    
T  6483873 tatgacatggccacaaactgttttcagcttattttaataagctctctaggatagctta 6483816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 345
Target Start/End: Original strand, 11040542 - 11040651
Alignment:
Q  236 tgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagctt 335  Q
    |||||||| |||  || |||||| |||| || |||| | |||||| ||| ||||||  ||  ||||||  |||||| ||||||||| |||||||| ||||    
T  11040542 tgacttatatgagcttatctactcacataaacacttctaatactgattgagagagcatatgaaaacagagtatgacatgtccataagttgttttcggctt 11040641  T
Q  336 attttcataa 345  Q
    ||||||||||    
T  11040642 attttcataa 11040651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 363
Target Start/End: Original strand, 28795871 - 28795908
Alignment:
Q  326 ttttcagcttattttcataagttctctatgatagctta 363  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  28795871 ttttcagcttattttcataagttctctaatatagctta 28795908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 363
Target Start/End: Original strand, 53789479 - 53789516
Alignment:
Q  326 ttttcagcttattttcataagttctctatgatagctta 363  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  53789479 ttttcagcttaatttcataagttctccatgatagctta 53789516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 270 - 346
Target Start/End: Original strand, 11039301 - 11039377
Alignment:
Q  270 ttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataag 346  Q
    |||||| ||||||||  |||||| ||  |||||  ||||||| ||||||||| ||||||||||||||| | ||||||    
T  11039301 ttgtgagactgtttgaaagagcttatggaaacatattatgacatgtccataagttgttttcagcttatctccataag 11039377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 270 - 346
Target Start/End: Original strand, 20194995 - 20195070
Alignment:
Q  270 ttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataag 346  Q
    |||||| |||||||| ||||||| ||  |||||||||||||| | | || || ||||||||||||| ||||||||||    
T  20194995 ttgtgagactgtttgtgagagcttatgaaaacagtttatgacatattcaaaagttgttttcagctt-ttttcataag 20195070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 227 - 339
Target Start/End: Original strand, 20210847 - 20210959
Alignment:
Q  227 tgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgt 326  Q
    |||||||| ||| ||||||||  || ||||||||||| |  |||||||| |||||||| |||| || ||  |||| | ||||||  |||| || | ||||    
T  20210847 tgtttggattgatttatttgaggttatctactgacataaccacttgtgagactgtttgagagatcttatgcaaacggattatgatatgtctatgagttgt 20210946  T
Q  327 tttcagcttattt 339  Q
    |||||||||||||    
T  20210947 tttcagcttattt 20210959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 324 - 364
Target Start/End: Original strand, 24085354 - 24085394
Alignment:
Q  324 tgttttcagcttattttcataagttctctatgatagcttac 364  Q
    ||||||||||||||||||| |||||||| | ||||||||||    
T  24085354 tgttttcagcttattttcacaagttctccaagatagcttac 24085394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 340
Target Start/End: Complemental strand, 41724350 - 41724250
Alignment:
Q  240 ttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattt 339  Q
    ||||||||| || ||||||||||| |  |||||| | || ||||| || | || ||  |||||  ||||||| ||||||||| |||||||||||||||||    
T  41724350 ttatttgaacttatctactgacataagtacttgtcagacagtttgtgaaaacttatggaaacaacttatgacatgtccataagttgttttcagcttattt 41724251  T
Q  340 t 340  Q
    |    
T  41724250 t 41724250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 371
Target Start/End: Original strand, 42817192 - 42817287
Alignment:
Q  278 ctgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagct--tattttcataagttctctatgatagcttacgcaaaca 371  Q
    ||||||| ||||||| ||  ||||||  |||||| ||||||||| ||||||||||||  |||| ||||||  |||||  ||||||||||| |||||    
T  42817192 ctgtttgagagagcttatggaaacagcatatgacatgtccataagttgttttcagcttatattctcataaactctcttagatagcttacgaaaaca 42817287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 226 - 373
Target Start/End: Original strand, 28691754 - 28691900
Alignment:
Q  226 ctgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattg 325  Q
    ||||||||| |||||||||||| ||| ||| || |||| |  | |||||| |||||| || ||| || ||  |||||| ||||||| |||||||||||||    
T  28691754 ctgtttggattgacttatttgagtttatctgctaacataagcatttgtgagactgttcgg-agatcttatgaaaacagcttatgacttgtccataaattg 28691852  T
Q  326 ttttcagcttattttcataagttctctatgatagcttacgcaaacaat 373  Q
    || |||| ||||||||||||| |||| | ||||||||| | |||||||    
T  28691853 ttatcagtttattttcataagatctccaggatagcttatgaaaacaat 28691900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 227 - 331
Target Start/End: Complemental strand, 30751670 - 30751566
Alignment:
Q  227 tgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgt 326  Q
    |||||||| | |||||||| || || ||||||||||| |  |||||||  |||||||||||||||| ||| |||||||||||  | |||||||||| |||    
T  30751670 tgtttggattaacttatttaaacttatctactgacataagcacttgtgcgactgtttgggagagcttatagaaacagtttatagcatgtccataaactgt 30751571  T
Q  327 tttca 331  Q
    |||||    
T  30751570 tttca 30751566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 268 - 346
Target Start/End: Complemental strand, 39345581 - 39345503
Alignment:
Q  268 acttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataag 346  Q
    |||||||| ||||||||| |||| | ||  |||||||||||||| ||||||||| ||| ||||||||||||| ||||||    
T  39345581 acttgtgagactgtttggtagagttcatggaaacagtttatgacatgtccataagttgctttcagcttatttccataag 39345503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 270 - 351
Target Start/End: Original strand, 48157082 - 48157163
Alignment:
Q  270 ttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctc 351  Q
    |||||| |||||||||||||||| ||| |||||  ||||| | |||||||||  |||||||||||||||| |||||| ||||    
T  48157082 ttgtgagactgtttgggagagcttatagaaacaacttatgccatgtccataagctgttttcagcttatttccataagatctc 48157163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 268 - 339
Target Start/End: Complemental strand, 33894737 - 33894666
Alignment:
Q  268 acttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattt 339  Q
    |||||||| |||||||| ||||||| ||  ||||||  |||||| ||||||||| |||||||||||||||||    
T  33894737 acttgtgagactgtttgtgagagcttatgaaaacagcatatgacatgtccataagttgttttcagcttattt 33894666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 376
Target Start/End: Complemental strand, 9038191 - 9038114
Alignment:
Q  298 aaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagcttacgcaaacaattta 376  Q
    |||||| ||||||| ||| ||||| |||||||||||||||||||| |||||||| ||||||| ||| | ||||| ||||    
T  9038191 aaacagcttatgacatgttcataa-ttgttttcagcttattttcacaagttctccatgatagtttatgaaaacagttta 9038114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 379
Target Start/End: Complemental strand, 34035978 - 34035916
Alignment:
Q  317 cataaattgttttcagcttattttcataagttctctatgatagcttacgcaaacaatttaact 379  Q
    ||||| ||||||||| |||||||||  |||||||||| ||||||||| | |||||||||||||    
T  34035978 cataagttgttttcaacttattttcgcaagttctctaagatagcttatgaaaacaatttaact 34035916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 363
Target Start/End: Original strand, 40530414 - 40530464
Alignment:
Q  313 tgtccataaattgttttcagcttattttcataagttctctatgatagctta 363  Q
    |||| |||||||||||||| |||||||||||||||||| || |||||||||    
T  40530414 tgtctataaattgttttcaacttattttcataagttctttaggatagctta 40530464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 401 - 471
Target Start/End: Complemental strand, 49060490 - 49060420
Alignment:
Q  401 gcttatacataagcacatatatgataagtgatcatgcaataagtgcttaactaagctgtttacccaaacag 471  Q
    ||||||||||||  || |||||||||||  || || | |||||||||||| ||||||||||||||||||||    
T  49060490 gcttatacataaatacttatatgataagccattatactataagtgcttaattaagctgtttacccaaacag 49060420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 320 - 373
Target Start/End: Original strand, 33552862 - 33552915
Alignment:
Q  320 aaattgttttcagcttattttcataagttctctatgatagcttacgcaaacaat 373  Q
    ||||||||||  |||||||||||||||||||||| ||||||||| | |||||||    
T  33552862 aaattgttttatgcttattttcataagttctctaagatagcttatgaaaacaat 33552915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 287 - 351
Target Start/End: Complemental strand, 7244771 - 7244707
Alignment:
Q  287 agagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctc 351  Q
    |||||||||  ||||| |||||||| ||  ||||| |||||||||||||||||||||||| ||||    
T  7244771 agagctgatggaaacaatttatgacatgctcataagttgttttcagcttattttcataagctctc 7244707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 229 - 353
Target Start/End: Original strand, 12234810 - 12234934
Alignment:
Q  229 tttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttt 328  Q
    |||||| ||||||| ||||  || ||||||| |||||  || ||||| |||| |||| | |||| ||| |||||  ||||||| |||| ||||  |||||    
T  12234810 tttggattgacttagttgagcttatctactggcattagcacgtgtgagactgcttggaatagcttatagaaacaacttatgacatgtctataagctgttt 12234909  T
Q  329 tcagcttattttcataagttctcta 353  Q
    ||||||||||| |||||| ||||||    
T  12234910 tcagcttatttccataagctctcta 12234934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 476
Target Start/End: Complemental strand, 31341144 - 31341069
Alignment:
Q  401 gcttatacataagcacatatatgataagtgatcatgcaataagtgcttaactaagctgtttacccaaacagggcct 476  Q
    |||||||||||||||  || |||||||| | | |||||||||| |||| | |||| |||||| |||||||||||||    
T  31341144 gcttatacataagcatttagatgataagcgcttatgcaataagcgcttgattaagttgtttatccaaacagggcct 31341069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 363
Target Start/End: Original strand, 42281486 - 42281569
Alignment:
Q  280 gtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 363  Q
    |||| |||||||| ||| |||||| ||||||| |||  |||| |||||||||||||||||  ||||| ||||  ||||||||||    
T  42281486 gtttaggagagcttatagaaacagcttatgacatgtaaataatttgttttcagcttatttctataagctctcagtgatagctta 42281569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 363
Target Start/End: Original strand, 27626084 - 27626178
Alignment:
Q  269 cttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 363  Q
    ||||||| | |||||| || |||| ||  |||||| ||||||| |||||||||| |||||| | ||||||| |||||| |||  |||||||||||    
T  27626084 cttgtgagattgtttgagaaagcttatggaaacagcttatgacatgtccataaactgttttaaacttatttccataagctcttcatgatagctta 27626178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 363
Target Start/End: Complemental strand, 39281034 - 39280984
Alignment:
Q  313 tgtccataaattgttttcagcttattttcataagttctctatgatagctta 363  Q
    ||||||||| ||||||||||||||||| |||| |||||| | |||||||||    
T  39281034 tgtccataagttgttttcagcttatttccatatgttctccaagatagctta 39280984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 351
Target Start/End: Complemental strand, 46082109 - 46082063
Alignment:
Q  305 ttatgacgtgtccataaattgttttcagcttattttcataagttctc 351  Q
    ||||||| || |||||| |||||||||||||||||||||||| ||||    
T  46082109 ttatgacatgaccataagttgttttcagcttattttcataagctctc 46082063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 362
Target Start/End: Original strand, 2825240 - 2825285
Alignment:
Q  317 cataaattgttttcagcttattttcataagttctctatgatagctt 362  Q
    ||||| || |||||||||||||| ||||||||||||| ||||||||    
T  2825240 cataagttattttcagcttatttccataagttctctaggatagctt 2825285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 363
Target Start/End: Original strand, 5628557 - 5628621
Alignment:
Q  298 aaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 363  Q
    |||||||||||||| |||| ||||  ||||| ||||||||||||||||| ||||| ||||| ||||    
T  5628557 aaacagtttatgacatgtctataagctgttt-cagcttattttcataagctctctgtgatatctta 5628621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 363
Target Start/End: Complemental strand, 30535715 - 30535578
Alignment:
Q  226 ctgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattg 325  Q
    ||||||| | |||||||||||| ||  | ||||||||| || ||||| || ||||||| ||||| || ||  |||||  ||||||  ||| | |||  ||    
T  30535715 ctgtttgaattgacttatttgagttaatttactgacataaacacttgagagactgttttggagaacttatgaaaacaacttatgatatgttcgtaagctg 30535616  T
Q  326 ttttcagcttattttcataagttctctatgatagctta 363  Q
    ||||||| ||||||||||| ||||| || |||||||||    
T  30535615 ttttcaggttattttcatatgttctataagatagctta 30535578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 363
Target Start/End: Original strand, 37064230 - 37064275
Alignment:
Q  318 ataaattgttttcagcttattttcataagttctctatgatagctta 363  Q
    |||| ||||||| || ||||||||||||| ||||||||||||||||    
T  37064230 ataagttgttttaagtttattttcataagctctctatgatagctta 37064275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 371
Target Start/End: Original strand, 37064482 - 37064527
Alignment:
Q  326 ttttcagcttattttcataagttctctatgatagcttacgcaaaca 371  Q
    |||||||||||||||||||||| |||||  |||||||||| |||||    
T  37064482 ttttcagcttattttcataagtcctctaaaatagcttacgaaaaca 37064527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 346
Target Start/End: Complemental strand, 44808231 - 44808190
Alignment:
Q  305 ttatgacgtgtccataaattgttttcagcttattttcataag 346  Q
    ||||||| |||||||||  |||||||||||||||||||||||    
T  44808231 ttatgacatgtccataacctgttttcagcttattttcataag 44808190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 346
Target Start/End: Original strand, 47134754 - 47134795
Alignment:
Q  305 ttatgacgtgtccataaattgttttcagcttattttcataag 346  Q
    |||||||  |||||||| ||||||||||||||||||||||||    
T  47134754 ttatgacacgtccataagttgttttcagcttattttcataag 47134795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 268 - 372
Target Start/End: Original strand, 3610700 - 3610804
Alignment:
Q  268 acttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagcttacgca 367  Q
    |||||||||||| ||||||| | || ||  |||||| | ||||| |||||||||    ||||||||||||||  ||||| |||||| ||||| ||||| |    
T  3610700 acttgtgatactttttgggaaaccttatggaaacagctaatgacatgtccataagcctttttcagcttatttctataagctctctaggatagtttacgaa 3610799  T
Q  368 aacaa 372  Q
    |||||    
T  3610800 aacaa 3610804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 338
Target Start/End: Original strand, 12834952 - 12834992
Alignment:
Q  298 aaacagtttatgacgtgtccataaattgttttcagcttatt 338  Q
    |||||| ||||||| |||||||||| |||||||||||||||    
T  12834952 aaacagcttatgacatgtccataaactgttttcagcttatt 12834992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 227 - 351
Target Start/End: Original strand, 22387815 - 22387939
Alignment:
Q  227 tgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgt 326  Q
    |||||||| ||||||| | ||| || | ||||||||| || || ||||| |||||||||||||||| ||  |||||  ||||| | |||  ||||| |||    
T  22387815 tgtttggattgacttactagaacttatttactgacataaacacgtgtgagactgtttgggagagcttatgaaaacaacttatggcatgtttataaactgt 22387914  T
Q  327 tttcagcttattttcataagttctc 351  Q
    ||| | ||||||| |||||| ||||    
T  22387915 ttttaacttatttccataagctctc 22387939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 308 - 372
Target Start/End: Original strand, 24363601 - 24363665
Alignment:
Q  308 tgacgtgtccataaattgttttcagcttattttcataagttctctatgatagcttacgcaaacaa 372  Q
    |||| ||||||||| ||||||||||||||||| |||||  |||| | ||||||||| | ||||||    
T  24363601 tgacatgtccataagttgttttcagcttatttccataacctctccaggatagcttatgaaaacaa 24363665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 324 - 376
Target Start/End: Complemental strand, 39907857 - 39907805
Alignment:
Q  324 tgttttcagcttattttcataagttctctatgatagcttacgcaaacaattta 376  Q
    |||||||||||||||||||| ||||||||| ||||| ||| | ||||| ||||    
T  39907857 tgttttcagcttattttcattagttctctaagatagtttatgaaaacagttta 39907805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 236 - 346
Target Start/End: Complemental strand, 6950464 - 6950354
Alignment:
Q  236 tgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagctt 335  Q
    |||||||||||| ||| ||||||| ||| || | |||||| | |||||||||||||| || ||||||   |||||| |||| |||| |||||||||||||    
T  6950464 tgacttatttgagtttatctactggcataaacatttgtgagattgtttgggagagcttatgtaaacaacctatgacatgtcgataagttgttttcagctt 6950365  T
Q  336 attttcataag 346  Q
    |||| ||||||    
T  6950364 atttccataag 6950354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 279 - 363
Target Start/End: Original strand, 9540967 - 9541051
Alignment:
Q  279 tgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 363  Q
    |||||||||||||| ||  |||||  ||||||| ||||||||| |||| ||||||||||||||| ||| |||||| |||||||||    
T  9540967 tgtttgggagagcttatggaaacatcttatgacatgtccataatttgtgttcagcttattttcaaaagctctctaggatagctta 9541051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 363
Target Start/End: Original strand, 11569417 - 11569512
Alignment:
Q  268 acttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 363  Q
    |||||||| |||||||  ||||||| ||  |||||| ||||||| ||| ||||| |||||||||||||||||||| ||  |||| |||||||||||    
T  11569417 acttgtgagactgtttaagagagcttatggaaacagcttatgacatgtacataagttgttttcagcttattttcaaaatctctccatgatagctta 11569512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 397 - 477
Target Start/End: Complemental strand, 11415108 - 11415028
Alignment:
Q  397 aatggcttatacataagcacatatatgataagtgatcatgcaataagtgcttaactaagctgtttacccaaacagggcctg 477  Q
    |||||||||||||| | ||| ||||||||||||||| |||| ||||| |||| | |||| || ||| ||||||||||||||    
T  11415108 aatggcttatacatgaacacttatatgataagtgattatgctataagcgcttgaataagttggttatccaaacagggcctg 11415028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 307 - 363
Target Start/End: Complemental strand, 30389170 - 30389114
Alignment:
Q  307 atgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 363  Q
    ||||| ||| ||||| ||||||||||||||||||||||||||||||| || ||||||    
T  30389170 atgacatgttcataagttgttttcagcttattttcataagttctctaggaaagctta 30389114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 324 - 371
Target Start/End: Original strand, 14247240 - 14247287
Alignment:
Q  324 tgttttcagcttattttcataagttctctatgatagcttacgcaaaca 371  Q
    |||||||||||||||||||||||||||||| |||| |||||| |||||    
T  14247240 tgttttcagcttattttcataagttctctacgatatcttacgaaaaca 14247287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 277 - 363
Target Start/End: Original strand, 4055585 - 4055671
Alignment:
Q  277 actgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 363  Q
    |||||||||||||| | ||| ||| |  ||||||| |||||||||| |||||||||||||||| | |||| |||||  |||||||||    
T  4055585 actgtttgggagagtttatagaaataacttatgacatgtccataaactgttttcagcttatttccttaagctctctgagatagctta 4055671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 352
Target Start/End: Complemental strand, 9700153 - 9700027
Alignment:
Q  226 ctgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattg 325  Q
    ||||||||| | ||||||||||  || ||||||  ||| || |||||||| ||| |||| |||||||  |  || || |||||||| |||||||||  ||    
T  9700153 ctgtttggattaacttatttgagcttatctactagcataaacacttgtgagactatttgagagagcttgtgaaatcaatttatgacatgtccataagctg 9700054  T
Q  326 ttttcagcttattttcataagttctct 352  Q
    |||||| |||||||||||||| |||||    
T  9700053 ttttcaccttattttcataagctctct 9700027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 298 - 363
Target Start/End: Original strand, 2364483 - 2364548
Alignment:
Q  298 aaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 363  Q
    |||||||||||||| |||||||||| |||||||||||| |||  | ||| |||||| |||||||||    
T  2364483 aaacagtttatgacatgtccataaagtgttttcagcttttttcgacaagctctctaagatagctta 2364548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 298 - 363
Target Start/End: Complemental strand, 8062409 - 8062344
Alignment:
Q  298 aaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 363  Q
    ||||||||||  ||||||||||||  |||||||||||||||| |||||  |||||| |||||||||    
T  8062409 aaacagtttacaacgtgtccataagatgttttcagcttatttccataatctctctaagatagctta 8062344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 360
Target Start/End: Original strand, 42215270 - 42215358
Alignment:
Q  272 gtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagc 360  Q
    |||| ||||||||||||| || ||  |||||| ||||||| ||| |||||  |||||||||||||||| |||||| |||| | ||||||    
T  42215270 gtgacactgtttgggagaactaatgaaaacagcttatgacttgttcataagctgttttcagcttatttacataagctctccaggatagc 42215358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 360
Target Start/End: Original strand, 25869263 - 25869318
Alignment:
Q  305 ttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagc 360  Q
    ||||||| ||||||||| ||||||||||||||||| |||||  |||| ||||||||    
T  25869263 ttatgacatgtccataagttgttttcagcttatttccataaactctccatgatagc 25869318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 351
Target Start/End: Complemental strand, 44401670 - 44401588
Alignment:
Q  268 acttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctc 351  Q
    |||||||| ||||||||||| || | ||| |||||  ||| ||| ||| |||| |||||||||||||||||| |||||||||||    
T  44401670 acttgtgagactgtttgggatagtttatagaaacaactta-gacatgttcatacattgttttcagcttatttccataagttctc 44401588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 351
Target Start/End: Original strand, 3536954 - 3536988
Alignment:
Q  317 cataaattgttttcagcttattttcataagttctc 351  Q
    ||||||||||||||||||||||| |||||||||||    
T  3536954 cataaattgttttcagcttatttccataagttctc 3536988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 363
Target Start/End: Complemental strand, 11795165 - 11795107
Alignment:
Q  305 ttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 363  Q
    ||||||| |||||||||  |||||||||||||||| |||||| |||| || ||||||||    
T  11795165 ttatgacatgtccataacctgttttcagcttatttccataagctctccataatagctta 11795107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 363
Target Start/End: Complemental strand, 20672823 - 20672765
Alignment:
Q  305 ttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 363  Q
    ||||||| ||| |||||  ||||||||||||||||||||||| |||| | |||||||||    
T  20672823 ttatgacatgttcataagctgttttcagcttattttcataagctctccaggatagctta 20672765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 361
Target Start/End: Complemental strand, 24326141 - 24326050
Alignment:
Q  268 acttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagct 361  Q
    |||||||| |||||||||||||||| ||  |||||||||||||  | | ||||| |||||||| ||||||||   ||||||||| | |||||||    
T  24326141 acttgtgagactgtttgggagagcttatggaaacagtttatga--tatacataagttgttttccgcttatttctttaagttctcaacgatagct 24326050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 345
Target Start/End: Original strand, 30191072 - 30191178
Alignment:
Q  239 cttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttatt 338  Q
    ||||||||| ||| |||| || ||| |  |||||| | |||||||||||||||| ||  |||||  ||||||| ||| || || ||||||||||||||||    
T  30191072 cttatttgagtttatctattggcataagcacttgttagactgtttgggagagcttatggaaacaacttatgacatgttcaaaacttgttttcagcttatt 30191171  T
Q  339 ttcataa 345  Q
    | |||||    
T  30191172 tccataa 30191178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 354
Target Start/End: Original strand, 44033556 - 44033595
Alignment:
Q  313 tgtccataaattgttttcagcttattttcataagttctctat 354  Q
    |||||||||||||||  |||||||||||||||||||||||||    
T  44033556 tgtccataaattgtt--cagcttattttcataagttctctat 44033595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 346
Target Start/End: Original strand, 3600735 - 3600776
Alignment:
Q  305 ttatgacgtgtccataaattgttttcagcttattttcataag 346  Q
    ||||||| ||||||||| ||||||||| ||||||||||||||    
T  3600735 ttatgacatgtccataagttgttttcaacttattttcataag 3600776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 290
Target Start/End: Original strand, 8535976 - 8536037
Alignment:
Q  229 tttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagag 290  Q
    |||||| || || |||||||||| ||||||||||| |  |||||||| ||||||||||||||    
T  8535976 tttggattggctaatttgaatttatctactgacataagtacttgtgagactgtttgggagag 8536037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 346
Target Start/End: Original strand, 14339602 - 14339643
Alignment:
Q  305 ttatgacgtgtccataaattgttttcagcttattttcataag 346  Q
    ||||||| ||||||||| ||||||||| ||||||||||||||    
T  14339602 ttatgacatgtccataagttgttttcaacttattttcataag 14339643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 305 - 353
Target Start/End: Original strand, 2594994 - 2595042
Alignment:
Q  305 ttatgacgtgtccataaattgttttcagcttattttcataagttctcta 353  Q
    ||||||| ||| ||||| |||||||||||||||| ||||||||| ||||    
T  2594994 ttatgacatgttcataagttgttttcagcttattctcataagttgtcta 2595042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 277 - 337
Target Start/End: Original strand, 7878496 - 7878555
Alignment:
Q  277 actgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttat 337  Q
    |||||||||||||||| ||| || ||| ||||||| |||| ||||| ||||||||||||||    
T  7878496 actgtttgggagagcttatagaa-cagcttatgacatgtctataaactgttttcagcttat 7878555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 375
Target Start/End: Complemental strand, 12851330 - 12851179
Alignment:
Q  226 ctgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgata--ctgtttgggagagctgatataaacagtttatgacgtgtccataaat 323  Q
    ||||||||| || ||||| |||| ||  ||| || ||| || ||||||||||  |||||||||| | || ||  |||||| |||| || ||| |||||      
T  12851330 ctgtttggattggcttatctgaacttacctattggcataaacacttgtgatagactgtttgggaaaacttatgaaaacagcttataacatgttcataaga 12851231  T
Q  324 tgttttcagcttattttcataagttctctatgatagcttacgcaaacaattt 375  Q
    ||||||| ||||||||||||||| |||| | || |||||| | |||||||||    
T  12851230 tgttttcggcttattttcataagctctcaaggaaagcttatgaaaacaattt 12851179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 461
Target Start/End: Complemental strand, 12972806 - 12972746
Alignment:
Q  401 gcttatacataagcacatatatgataagtgatcatgcaataagtgcttaactaagctgttt 461  Q
    |||||||||||||||| |||||||||| || | |||| ||||| |||||| |||| |||||    
T  12972806 gcttatacataagcacttatatgataaatgcttatgctataagcgcttaattaagttgttt 12972746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 270 - 361
Target Start/End: Original strand, 29168018 - 29168110
Alignment:
Q  270 ttgtgatactgtttgggagagctgatataaacagtttatgac-gtgtccataaattgttttcagcttattttcataagttctctatgatagct 361  Q
    |||||| ||||||||||||| || ||| |||||| |||||||  | | |||||||  || ||||||||||| ||||||||||| | |||||||    
T  29168018 ttgtgagactgtttgggagaacttataaaaacagattatgacatttttcataaatgtttctcagcttatttccataagttctccaagatagct 29168110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 358
Target Start/End: Original strand, 41606893 - 41606953
Alignment:
Q  298 aaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgata 358  Q
    |||||| ||||||| ||| || || ||||||||||||||||| |||||| |||||| ||||    
T  41606893 aaacagcttatgacatgttcaaaagttgttttcagcttatttccataagctctctaggata 41606953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 342
Target Start/End: Original strand, 41620210 - 41620325
Alignment:
Q  226 ctgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattg 325  Q
    ||||||||| ||| ||||||||| ||  |||||||||| || || |||||  ||||| |||| || | ||  |||||  ||||||| ||||||||| |||    
T  41620210 ctgtttgga-tgatttatttgaacttacctactgacatgaacacctgtgaggctgttagggaaagtttatggaaacaaattatgacatgtccataagttg 41620308  T
Q  326 ttttcagcttattttca 342  Q
    ||||| |||||||||||    
T  41620309 ttttccgcttattttca 41620325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 253 - 363
Target Start/End: Complemental strand, 34939869 - 34939759
Alignment:
Q  253 tctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctct 352  Q
    |||| |||||| || | |||||| ||||||| |||||||| |   |||||| ||||||| ||||||||||||||||||||||||||| |||||  ||||     
T  34939869 tctagtgacataaacatttgtgaaactgttttggagagcttacggaaacagcttatgacatgtccataaattgttttcagcttatttccataaactctcc 34939770  T
Q  353 atgatagctta 363  Q
    | |||||||||    
T  34939769 aggatagctta 34939759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 226 - 363
Target Start/End: Original strand, 281766 - 281903
Alignment:
Q  226 ctgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattg 325  Q
    ||||||||| ||||||| ||||  || | || |||||| |  |||||||| |||||||||||||||| ||  || ||  ||||||| |||| |||| |||    
T  281766 ctgtttggattgacttacttgagattatgtagtgacataagtacttgtgagactgtttgggagagctaatggaagcaacttatgacatgtctataagttg 281865  T
Q  326 ttttcagcttattttcataagttctctatgatagctta 363  Q
    |||||||||||||| ||| || |||||| |||||||||    
T  281866 ttttcagcttatttccatgagctctctaggatagctta 281903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 336
Target Start/End: Original strand, 2732189 - 2732275
Alignment:
Q  250 ttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagctta 336  Q
    |||||||||||||| |  |||||||| ||||||||| | |||| ||  |||||| | ||||  ||||||||||||||||||||||||    
T  2732189 ttgtctactgacataagcacttgtgagactgtttggaaaagcttatggaaacagctaatgatctgtccataaattgttttcagctta 2732275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 226 - 351
Target Start/End: Original strand, 7785662 - 7785787
Alignment:
Q  226 ctgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattg 325  Q
    ||||||||| || ||||||||||||| ||||||||||| |  |||| ||  |||| |||   ||| | | | |||||| ||||||| |||| |||| |||    
T  7785662 ctgtttggattgtcttatttgaatttatctactgacataagcacttttgggactgattgaaggagtttacagaaacagcttatgacatgtctataagttg 7785761  T
Q  326 ttttcagcttattttcataagttctc 351  Q
    |||||||||||||| |||||| ||||    
T  7785762 ttttcagcttatttccataagctctc 7785787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 401 - 474
Target Start/End: Complemental strand, 9027527 - 9027454
Alignment:
Q  401 gcttatacataagcacatatatgataagtgatcatgcaataagtgcttaactaagctgtttacccaaacagggc 474  Q
    ||||||| |||||||| ||||| ||||||| |||||| ||||| |||||  ||| ||||||| |||||||||||    
T  9027527 gcttatagataagcacttatataataagtgttcatgctataagcgcttacttaaactgtttatccaaacagggc 9027454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 305 - 346
Target Start/End: Complemental strand, 9027651 - 9027610
Alignment:
Q  305 ttatgacgtgtccataaattgttttcagcttattttcataag 346  Q
    ||||||| ||||||||| ||||||||||||||||||||||||    
T  9027651 ttatgacatgtccataagttgttttcagcttattttcataag 9027610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 231 - 372
Target Start/End: Complemental strand, 33067305 - 33067164
Alignment:
Q  231 tggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttc 330  Q
    |||| |||| ||| ||||||| ||||||||||| |  |||||| | |||| ||||||||||| ||   ||||||||| ||  ||||||||||| ||||||    
T  33067305 tggattgacctatgtgaatttatctactgacataagcacttgtaagactgattgggagagcttatggcaacagtttaggaaatgtccataaatcgttttc 33067206  T
Q  331 agcttattttcataagttctctatgatagcttacgcaaacaa 372  Q
    || ||||||  | ||| |||| | ||||||||| | ||||||    
T  33067205 agtttatttctacaagctctccaagatagcttatgaaaacaa 33067164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 363
Target Start/End: Original strand, 835265 - 835304
Alignment:
Q  324 tgttttcagcttattttcataagttctctatgatagctta 363  Q
    |||||||||||||||||||||||||||| | |||||||||    
T  835265 tgttttcagcttattttcataagttctccaagatagctta 835304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 364
Target Start/End: Original strand, 160970 - 161008
Alignment:
Q  326 ttttcagcttattttcataagttctctatgatagcttac 364  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  160970 ttttcagcttattttcataagttctctaatatagcttac 161008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 346
Target Start/End: Original strand, 2023350 - 2023424
Alignment:
Q  272 gtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataag 346  Q
    |||| ||||||||| |||||| ||| || ||| |||| || |||| |||| ||||||||| ||||||||||||||    
T  2023350 gtgagactgtttggaagagctcatagaaccagcttataacttgtctataagttgttttcaacttattttcataag 2023424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 351
Target Start/End: Complemental strand, 3528876 - 3528830
Alignment:
Q  305 ttatgacgtgtccataaattgttttcagcttattttcataagttctc 351  Q
    ||||||| ||||||||| ||||||||| |||||||||||||| ||||    
T  3528876 ttatgacatgtccataacttgttttcatcttattttcataagctctc 3528830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 363
Target Start/End: Complemental strand, 6647460 - 6647402
Alignment:
Q  305 ttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 363  Q
    ||||||| ||| |||||  |||||||| |||||||||||||| |||||| |||||||||    
T  6647460 ttatgacatgttcataagatgttttcaacttattttcataagctctctaagatagctta 6647402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 346
Target Start/End: Original strand, 29296291 - 29296333
Alignment:
Q  304 tttatgacgtgtccataaattgttttcagcttattttcataag 346  Q
    |||||||| ||||||||| || |||||||||||||||||||||    
T  29296291 tttatgacatgtccataagttattttcagcttattttcataag 29296333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 337
Target Start/End: Original strand, 3775088 - 3775157
Alignment:
Q  268 acttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttat 337  Q
    |||||||| ||| || || |||||| ||| |||||| ||||||| ||| |||||| ||||||||||||||    
T  3775088 acttgtgagactattcggaagagcttatagaaacagcttatgacatgtgcataaactgttttcagcttat 3775157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 370
Target Start/End: Original strand, 24836207 - 24836264
Alignment:
Q  313 tgtccataaattgttttcagcttattttcataagttctctatgatagcttacgcaaac 370  Q
    |||| ||| ||||||| |||||||||| |||||| |||| ||||||||||||| ||||    
T  24836207 tgtctatatattgtttccagcttatttccataagctctccatgatagcttacgaaaac 24836264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 321
Target Start/End: Complemental strand, 27857496 - 27857415
Alignment:
Q  240 ttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataa 321  Q
    |||||||| ||| |||||||||||  | |||||||| |||||||||||||||| ||  |||||  ||||||| | |||||||    
T  27857496 ttatttgagtttatctactgacatagacacttgtgaaactgtttgggagagcttatgaaaacaacttatgacatctccataa 27857415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 346
Target Start/End: Complemental strand, 27894111 - 27894078
Alignment:
Q  313 tgtccataaattgttttcagcttattttcataag 346  Q
    |||||||||| |||||||||||||||||||||||    
T  27894111 tgtccataaactgttttcagcttattttcataag 27894078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 27909636 - 27909681
Alignment:
Q  306 tatgacgtgtccataaattgttttcagcttattttcataagttctc 351  Q
    |||||| ||||||||| ||||||||||||||||| |||||| ||||    
T  27909636 tatgacatgtccataagttgttttcagcttatttccataagctctc 27909681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 365
Target Start/End: Original strand, 31624957 - 31624998
Alignment:
Q  324 tgttttcagcttattttcataagttctctatgatagcttacg 365  Q
    |||||||||||||||||||||||||||| |  ||||||||||    
T  31624957 tgttttcagcttattttcataagttctccaatatagcttacg 31624998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 363
Target Start/End: Complemental strand, 4420734 - 4420658
Alignment:
Q  287 agagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 363  Q
    |||||| ||| |||||  ||||||| ||| |||||  |||||||||||||||| |||||| |||| | |||||||||    
T  4420734 agagcttatagaaacaaattatgacatgttcataagctgttttcagcttatttccataagctctccaagatagctta 4420658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 324 - 376
Target Start/End: Original strand, 8364992 - 8365044
Alignment:
Q  324 tgttttcagcttattttcataagttctctatgatagcttacgcaaacaattta 376  Q
    |||||||||||||||||||| ||||| | ||||||||||| | ||||| ||||    
T  8364992 tgttttcagcttattttcatcagttcaccatgatagcttatgaaaacagttta 8365044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 362
Target Start/End: Complemental strand, 12230413 - 12230377
Alignment:
Q  326 ttttcagcttattttcataagttctctatgatagctt 362  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  12230413 ttttcagcttattttcataagctctccatgatagctt 12230377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 476
Target Start/End: Original strand, 22691657 - 22691713
Alignment:
Q  420 tatgataagtgatcatgcaataagtgcttaactaagctgtttacccaaacagggcct 476  Q
    ||||||||||| |||||| ||||| |||||| |||||||| || ||||||| |||||    
T  22691657 tatgataagtgctcatgcgataagcgcttaattaagctgtctatccaaacaaggcct 22691713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 371
Target Start/End: Original strand, 31671089 - 31671137
Alignment:
Q  323 ttgttttcagcttattttcataagttctctatgatagcttacgcaaaca 371  Q
    |||||||||||||||||||||||| | |||| ||||| ||||| |||||    
T  31671089 ttgttttcagcttattttcataagctatctaggatagtttacgaaaaca 31671137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 298 - 363
Target Start/End: Original strand, 41957441 - 41957506
Alignment:
Q  298 aaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 363  Q
    |||||| ||||||| ||||||||| ||||||||| ||||||||||||||||||| | |||||||||    
T  41957441 aaacagcttatgacatgtccataagttgttttcatcttattttcataagttctcaaggatagctta 41957506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 239 - 372
Target Start/End: Complemental strand, 40534338 - 40534205
Alignment:
Q  239 cttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttatt 338  Q
    ||||||||| ||| | ||||||||| || |||||||||||||||| |||||||| ||  ||  || ||||||| ||| ||||| | ||||||| |||| |    
T  40534338 cttatttgagtttatttactgacataaacacttgtgatactgtttaggagagcttatggaagtagcttatgacatgttcataattagttttcatcttact 40534239  T
Q  339 ttcataagttctctatgatagcttacgcaaacaa 372  Q
    | |||||| |||||  ||||||||| | ||||||    
T  40534238 tccataagctctctgggatagcttatgaaaacaa 40534205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 346
Target Start/End: Complemental strand, 41831004 - 41830884
Alignment:
Q  226 ctgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattg 325  Q
    ||||||||| |||||||||||| ||||| ||||| ||| || |  ||||| ||||||||||||| ||   | |||||  ||||||||||| ||||  |||    
T  41831004 ctgtttggattgacttatttgagtttgtgtactgtcataaacatctgtgagactgtttgggagaacttgcaaaaacaacttatgacgtgttcatatgttg 41830905  T
Q  326 ttttcagcttattttcataag 346  Q
    ||||| | |||||||||||||    
T  41830904 ttttccgtttattttcataag 41830884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 313 - 376
Target Start/End: Original strand, 7319013 - 7319076
Alignment:
Q  313 tgtccataaattgttttcagcttattttcataagttctctatgatagcttacgcaaacaattta 376  Q
    ||||||||| ||||| ||||||||||||||||||||||| | ||||||||| | ||||| ||||    
T  7319013 tgtccataagttgttctcagcttattttcataagttctccaagatagcttatgaaaacagttta 7319076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 268 - 363
Target Start/End: Original strand, 38104817 - 38104912
Alignment:
Q  268 acttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 363  Q
    |||||||| ||||||||||||| || | | ||||||  |||||| ||   |||| ||||||||||||||||| |||||| |||||| |||||||||    
T  38104817 acttgtgacactgtttgggagaacttacaaaaacaggctatgacttgcttataagttgttttcagcttatttccataagctctctaagatagctta 38104912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 401 - 475
Target Start/End: Complemental strand, 26516248 - 26516174
Alignment:
Q  401 gcttatacataagcacatatatgataagtgatcatgcaataagtgcttaactaagctgtttacccaaacagggcc 475  Q
    |||||||||||||||| ||||||||||| | | |||| ||||| |||||| |||| |||||| |||||| |||||    
T  26516248 gcttatacataagcacttatatgataagcgcttatgctataagcgcttaattaagttgtttatccaaactgggcc 26516174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 306 - 376
Target Start/End: Complemental strand, 34975436 - 34975366
Alignment:
Q  306 tatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagcttacgcaaacaattta 376  Q
    |||||| | ||||||||| ||||||||||||||| ||| || |||| | ||||||||||| ||||||||||    
T  34975436 tatgacatatccataaatcgttttcagcttatttccattagctctccaggatagcttacgaaaacaattta 34975366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 242 - 343
Target Start/End: Original strand, 1019400 - 1019501
Alignment:
Q  242 atttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttc 341  Q
    |||||| ||| | ||||||||| || |  ||||||||||||| |||||||| ||| ||| || ||||| | || |||||| ||||||||| |||||||||    
T  1019400 atttgagtttatatactgacataaacatgtgtgatactgtttaggagagcttataaaaatagcttatgccatggccataagttgttttcatcttattttc 1019499  T
Q  342 at 343  Q
    ||    
T  1019500 at 1019501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 19138712 - 19138760
Alignment:
Q  303 gtttatgacgtgtccataaattgttttcagcttattttcataagttctc 351  Q
    ||||||||| ||| ||||||||||||||||||||||| |||||| ||||    
T  19138712 gtttatgacatgtacataaattgttttcagcttatttccataagctctc 19138760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 346
Target Start/End: Complemental strand, 31208624 - 31208504
Alignment:
Q  226 ctgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattg 325  Q
    ||||||||| ||||||||||||| |   |||||||||| |  ||  |||| |||||||||||||| | ||| |||||  |||||   ||||| |||| ||    
T  31208624 ctgtttggattgacttatttgaactgaactactgacataagcacccgtgagactgtttgggagagttcataaaaacaacttatgtaatgtccgtaaactg 31208525  T
Q  326 ttttcagcttattttcataag 346  Q
    |||| ||||||||||||||||    
T  31208524 tttttagcttattttcataag 31208504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 363
Target Start/End: Original strand, 4014440 - 4014479
Alignment:
Q  324 tgttttcagcttattttcataagttctctatgatagctta 363  Q
    |||||||||||||||||||||||||||| | |||||||||    
T  4014440 tgttttcagcttattttcataagttctccaagatagctta 4014479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 376
Target Start/End: Complemental strand, 7319471 - 7319408
Alignment:
Q  313 tgtccataaattgttttcagcttattttcataagttctctatgatagcttacgcaaacaattta 376  Q
    |||| |||| ||| |||||||||||||| |||||||||| | ||||||||||| ||||| ||||    
T  7319471 tgtctataagttgctttcagcttatttttataagttctccaagatagcttacgaaaacagttta 7319408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 348
Target Start/End: Complemental strand, 8334632 - 8334601
Alignment:
Q  317 cataaattgttttcagcttattttcataagtt 348  Q
    ||||||||||||||||||||||||||||||||    
T  8334632 cataaattgttttcagcttattttcataagtt 8334601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 351
Target Start/End: Original strand, 14182385 - 14182424
Alignment:
Q  312 gtgtccataaattgttttcagcttattttcataagttctc 351  Q
    |||| ||||||||||||||| |||||||||||||||||||    
T  14182385 gtgttcataaattgttttcaacttattttcataagttctc 14182424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 361
Target Start/End: Original strand, 28586728 - 28586819
Alignment:
Q  270 ttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagct 361  Q
    |||||| |||||||||||||||| ||  ||| || ||||||| | ||| |||  ||||||||||||||||  ||||| |||||| |||||||    
T  28586728 ttgtgaaactgtttgggagagcttatggaaatagcttatgacatatccgtaagctgttttcagcttatttcgataagctctctaggatagct 28586819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 363
Target Start/End: Complemental strand, 4619808 - 4619722
Alignment:
Q  277 actgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 363  Q
    |||||||||||||||| ||  |||||  | ||||| ||| |||||  || ||||| ||||||| ||||||||||| |||||||||||    
T  4619808 actgtttgggagagcttatgaaaacaactaatgacatgttcataagctggtttcaccttatttccataagttctccatgatagctta 4619722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 363
Target Start/End: Complemental strand, 7985078 - 7984984
Alignment:
Q  270 ttgtgatactgtttgggagagctgatataaacagtttatgacgt-gtccataaattgttttcagcttattttcataagttctctatgatagctta 363  Q
    |||||| ||| |||||||||||| |   |||||| || |||||| || |||||  |||||||||||||||||||||| ||||| | |||||||||    
T  7985078 ttgtgagactatttgggagagcttaagaaaacagcttgtgacgttgttcataagctgttttcagcttattttcataaattctccaagatagctta 7984984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 360
Target Start/End: Original strand, 8177522 - 8177584
Alignment:
Q  298 aaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagc 360  Q
    |||||| ||||||  ||||||||| |||||||||| ||||||||||||| |||| | ||||||    
T  8177522 aaacagcttatgatatgtccataagttgttttcaggttattttcataagctctccaggatagc 8177584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 371
Target Start/End: Original strand, 10280603 - 10280661
Alignment:
Q  313 tgtccataaattgttttcagcttattttcataagttctctatgatagcttacgcaaaca 371  Q
    ||||||||| ||||| ||||||||||| ||||||||||||  |||| |||| |||||||    
T  10280603 tgtccataagttgttatcagcttatttccataagttctctgagataacttaagcaaaca 10280661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 351
Target Start/End: Complemental strand, 34160792 - 34160758
Alignment:
Q  317 cataaattgttttcagcttattttcataagttctc 351  Q
    |||||| ||||||||||||||||||||||||||||    
T  34160792 cataaactgttttcagcttattttcataagttctc 34160758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 363
Target Start/End: Complemental strand, 36639595 - 36639537
Alignment:
Q  305 ttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 363  Q
    ||||||||||||||||| ||||||||  |||||||||||||| |||  | |||||||||    
T  36639595 ttatgacgtgtccataagttgttttcctcttattttcataagctcttcaagatagctta 36639537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 372
Target Start/End: Original strand, 40205060 - 40205138
Alignment:
Q  294 atataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagcttacgcaaacaa 372  Q
    |||||||||| |||| || |||||||||  ||||||||||||||||  ||||| |||| | ||||||||| | ||||||    
T  40205060 atataaacagcttataacatgtccataatctgttttcagcttatttctataagctctccaggatagcttatgaaaacaa 40205138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 363
Target Start/End: Complemental strand, 42582561 - 42582511
Alignment:
Q  313 tgtccataaattgttttcagcttattttcataagttctctatgatagctta 363  Q
    |||||||||||| |||||| ||||||| ||||||||||||| |||| ||||    
T  42582561 tgtccataaattattttcaacttatttccataagttctctaagataactta 42582511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 351
Target Start/End: Complemental strand, 1899234 - 1899181
Alignment:
Q  298 aaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctc 351  Q
    |||||| ||||||| ||| ||||| ||||||||||||||||| ||||| |||||    
T  1899234 aaacagcttatgacatgtgcataagttgttttcagcttatttccataaattctc 1899181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 345
Target Start/End: Original strand, 10272391 - 10272468
Alignment:
Q  268 acttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataa 345  Q
    |||||||  ||| |||||||| ||| ||| |||||  ||||||| ||||  ||| |||||||||||||||||||||||    
T  10272391 acttgtgtgactatttgggagtgcttatagaaacaacttatgacatgtctgtaagttgttttcagcttattttcataa 10272468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 362
Target Start/End: Complemental strand, 12425636 - 12425587
Alignment:
Q  313 tgtccataaattgttttcagcttattttcataagttctctatgatagctt 362  Q
    |||| |||| ||||||||| ||||||||||||||||||| | ||||||||    
T  12425636 tgtcaataagttgttttcaacttattttcataagttctccaagatagctt 12425587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 363
Target Start/End: Original strand, 13605363 - 13605428
Alignment:
Q  298 aaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 363  Q
    |||||| ||||||  ||| |||||||||||||||| ||||||||||||| | || | |||||||||    
T  13605363 aaacagcttatgaaatgtacataaattgttttcagtttattttcataagctttccaggatagctta 13605428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 351
Target Start/End: Complemental strand, 14331447 - 14331394
Alignment:
Q  298 aaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctc 351  Q
    |||||| ||||||| |||||||||  || |||||||||||||||||||| ||||    
T  14331447 aaacagcttatgacatgtccataagctgatttcagcttattttcataagctctc 14331394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 364
Target Start/End: Complemental strand, 43300929 - 43300892
Alignment:
Q  327 tttcagcttattttcataagttctctatgatagcttac 364  Q
    ||||||||||||||||||||||||| | ||||||||||    
T  43300929 tttcagcttattttcataagttctccaagatagcttac 43300892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 346
Target Start/End: Original strand, 13604839 - 13604887
Alignment:
Q  298 aaacagtttatgacgtgtccataaattgttttcagcttattttcataag 346  Q
    |||||| ||||||| ||||||||  ||||||||| ||||||||||||||    
T  13604839 aaacagcttatgacatgtccatacgttgttttcaacttattttcataag 13604887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 346
Target Start/End: Complemental strand, 31694598 - 31694550
Alignment:
Q  298 aaacagtttatgacgtgtccataaattgttttcagcttattttcataag 346  Q
    |||||| |||| || ||||||||| ||||||||| ||||||||||||||    
T  31694598 aaacagcttatcacttgtccataagttgttttcaacttattttcataag 31694550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 363
Target Start/End: Original strand, 32059374 - 32059414
Alignment:
Q  323 ttgttttcagcttattttcataagttctctatgatagctta 363  Q
    |||||||||||||||||  |||||||||||| |||||||||    
T  32059374 ttgttttcagcttatttcgataagttctctaggatagctta 32059414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 346
Target Start/End: Complemental strand, 35963313 - 35963273
Alignment:
Q  306 tatgacgtgtccataaattgttttcagcttattttcataag 346  Q
    |||||| ||||||||| ||||||||||||||||| ||||||    
T  35963313 tatgacatgtccataagttgttttcagcttatttccataag 35963273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 226 - 372
Target Start/End: Complemental strand, 11264453 - 11264307
Alignment:
Q  226 ctgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattg 325  Q
    ||||||||| || ||||||||| | | ||||||  ||| || |  ||||| |||||||||||||||  ||| || ||  ||||||| |||||||||| ||    
T  11264453 ctgtttggattggcttatttgagtctatctactagcataaacatctgtgagactgtttgggagagcatatagaatcaacttatgacatgtccataaactg 11264354  T
Q  326 ttttcagcttattttcataagttctctatgatagcttacgcaaacaa 372  Q
    |||||| ||||||| |||||| |||||| ||| ||||| | ||||||    
T  11264353 ttttcaacttatttccataagctctctaggatggcttatgaaaacaa 11264307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 298 - 363
Target Start/End: Original strand, 28614798 - 28614863
Alignment:
Q  298 aaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 363  Q
    ||||| |||||||| | |||||||  | |||||||||||||||||||||||||||| |||||||||    
T  28614798 aaacaatttatgacatatccataagctcttttcagcttattttcataagttctctaggatagctta 28614863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 229 - 346
Target Start/End: Complemental strand, 25896933 - 25896812
Alignment:
Q  229 tttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaat----t 324  Q
    |||||| | |||||||||| ||| ||||||  |||||  |||||||| ||||||| |||||||| ||| ||| || ||||||| |||||||| ||    |    
T  25896933 tttggattcacttatttgagtttatctactagcattagcacttgtgagactgtttaggagagcttatagaaatagcttatgacatgtccatacataaact 25896834  T
Q  325 gttttcagcttattttcataag 346  Q
    ||||||||||||||||| ||||    
T  25896833 gttttcagcttattttcctaag 25896812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 271 - 339
Target Start/End: Complemental strand, 52754706 - 52754638
Alignment:
Q  271 tgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattt 339  Q
    ||||| ||||||||| |||||| ||  ||||||||||||||||||||||||  || |||||||||||||    
T  52754706 tgtgaaactgtttggaagagcttatgaaaacagtttatgacgtgtccataagctgctttcagcttattt 52754638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 401 - 468
Target Start/End: Complemental strand, 46053650 - 46053583
Alignment:
Q  401 gcttatacataagcacatatatgataagtgatcatgcaataagtgcttaactaagctgtttacccaaa 468  Q
    ||||||||||||| || ||||||||||||  |||||| ||||| |||||| ||||||||||| |||||    
T  46053650 gcttatacataagtacttatatgataagtactcatgctataagcgcttaattaagctgtttatccaaa 46053583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 268 - 363
Target Start/End: Original strand, 50799990 - 50800084
Alignment:
Q  268 acttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 363  Q
    |||||||| | ||||||||||| || || ||||||  ||||||| |||| ||||  |||||||||||||||| || |||||||| |||||||||||    
T  50799990 acttgtgagattgtttgggagaactaatgtaaacaacttatgacatgtctataagctgttttcagcttatttcca-aagttctccatgatagctta 50800084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 226 - 311
Target Start/End: Original strand, 7367972 - 7368057
Alignment:
Q  226 ctgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgac 311  Q
    ||||||||| |||||||||||| ||| ||||| | ||| ||  ||||||| |||||||||||||||| ||  |||||| |||||||    
T  7367972 ctgtttggattgacttatttgagtttatctacaggcataaacgcttgtgagactgtttgggagagctcatgaaaacagcttatgac 7368057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 270 - 363
Target Start/End: Complemental strand, 44320057 - 44319964
Alignment:
Q  270 ttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 363  Q
    |||||| |||||||||||||||| ||  |||||  |||||| || ||||| |  | |||||| || |||||||||||||||||| |||||||||    
T  44320057 ttgtgagactgtttgggagagcttatgaaaacaaattatgatgtatccattagctattttcaactaattttcataagttctctaggatagctta 44319964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 379
Target Start/End: Original strand, 21043155 - 21043306
Alignment:
Q  227 tgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgt 326  Q
    |||||||| |||||||||||| |||  |||| | ||| ||| ||||||| |||||||||||||| | ||  |||||| |||||||  || |||||  |||    
T  21043155 tgtttggattgacttatttgagtttacctacaggcatgaaa-cttgtgagactgtttgggagaggttatggaaacagcttatgacacgttcataagctgt 21043253  T
Q  327 tttcagcttattttcataagttctctatgatagcttacgcaaacaatttaact 379  Q
    ||||||  |||||||||| | |||  | ||||||||| | ||||| |||||||    
T  21043254 tttcagtgtattttcatatgctcttcaggatagcttatgaaaacagtttaact 21043306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 324 - 360
Target Start/End: Original strand, 29601024 - 29601060
Alignment:
Q  324 tgttttcagcttattttcataagttctctatgatagc 360  Q
    |||||||||||||||||||||||||||||| ||||||    
T  29601024 tgttttcagcttattttcataagttctctaggatagc 29601060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 315 - 359
Target Start/End: Complemental strand, 47970359 - 47970315
Alignment:
Q  315 tccataaattgttttcagcttattttcataagttctctatgatag 359  Q
    ||||||||||||||||||||||||| |||||| |||| |||||||    
T  47970359 tccataaattgttttcagcttatttgcataagctctccatgatag 47970315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 353
Target Start/End: Complemental strand, 24929573 - 24929518
Alignment:
Q  298 aaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctcta 353  Q
    |||||| ||||| | ||| ||||||||||||||||||||||| |||||| ||||||    
T  24929573 aaacagcttatggcatgttcataaattgttttcagcttatttccataagctctcta 24929518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 351
Target Start/End: Original strand, 33534097 - 33534212
Alignment:
Q  236 tgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagctt 335  Q
    ||||||||||||  || |||| |||||| |  |||||||| | | |||| ||||||| ||  |||||  || |||| | ||||||| |||||||||||||    
T  33534097 tgacttatttgagcttatctagtgacataagtacttgtgagagtatttgagagagcttatgaaaacaaattgtgacatatccataagttgttttcagctt 33534196  T
Q  336 attttcataagttctc 351  Q
    ||||||||||| ||||    
T  33534197 attttcataagctctc 33534212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 462
Target Start/End: Original strand, 39063768 - 39063827
Alignment:
Q  403 ttatacataagcacatatatgataagtgatcatgcaataagtgcttaactaagctgttta 462  Q
    |||||||||||||| ||||||||||||| | |||| ||||| |||||| || ||||||||    
T  39063768 ttatacataagcacttatatgataagtggttatgccataagcgcttaagtatgctgttta 39063827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 376
Target Start/End: Original strand, 53673663 - 53673726
Alignment:
Q  313 tgtccataaattgttttcagcttattttcataagttctctatgatagcttacgcaaacaattta 376  Q
    ||||||||| ||||||||||||||||| |||||| |||| | ||||||||| | ||||| ||||    
T  53673663 tgtccataagttgttttcagcttatttacataagctctccaagatagcttatgaaaacagttta 53673726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 360
Target Start/End: Original strand, 6987703 - 6987793
Alignment:
Q  270 ttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagc 360  Q
    |||||| |||||||||||||||| ||  | |||  ||||||| |||||||||| | |||||| ||||||| |||||| |||| | ||||||    
T  6987703 ttgtgagactgtttgggagagcttatggatacaacttatgacatgtccataaactattttcaacttatttccataagctctccaggatagc 6987793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 346
Target Start/End: Complemental strand, 42461361 - 42461283
Alignment:
Q  268 acttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataag 346  Q
    |||| ||| ||||||||||||| || ||  ||| ||  |||||||||| ||||| ||| ||||||||||||||||||||    
T  42461361 acttatgagactgtttgggagaacttatgaaaatagcctatgacgtgttcataagttgatttcagcttattttcataag 42461283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 363
Target Start/End: Original strand, 46415709 - 46415847
Alignment:
Q  226 ctgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgttt-gggagagctgatataaacagtttatgacgtgtccataaatt 324  Q
    ||||||||| |||||||||||| ||  || ||||||||   ||||| ||| ||||||| ||||||| | ||  |||||   |||||| ||||||||| ||    
T  46415709 ctgtttggattgacttatttgagttcatccactgacataggaacttatgagactgttttgggagagtttatgcaaacaacctatgacatgtccataagtt 46415808  T
Q  325 gttttcagcttattttcataagttctctatgatagctta 363  Q
    |||||||||| |||||  |||| |||| | |||||||||    
T  46415809 gttttcagctaattttactaagctctcgaggatagctta 46415847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 470
Target Start/End: Original strand, 51555970 - 51556056
Alignment:
Q  384 cttttattaaaataatggcttatacataagcacatatatgataagtgatcatgcaataagtgcttaactaagctgtttacccaaaca 470  Q
    ||||| ||| |||||| |||||||||||||||| |||||||||| || | |||  |||||||||| | |||| |||||  |||||||    
T  51555970 cttttgttataataatagcttatacataagcacttatatgataaatggttatgttataagtgctttattaagttgtttggccaaaca 51556056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 349
Target Start/End: Complemental strand, 53155359 - 53155289
Alignment:
Q  279 tgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttc 349  Q
    |||||| ||||||| ||  |||||  ||||||| |||| |||||||| |||||||||||||||| ||||||    
T  53155359 tgtttgtgagagcttatgcaaacaacttatgacatgtctataaattgctttcagcttattttcacaagttc 53155289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 336
Target Start/End: Original strand, 54277241 - 54277351
Alignment:
Q  226 ctgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattg 325  Q
    |||||| || ||||||||||||| || |||| |||||| || |||| ||| |||||| | ||||||| | | |||||| |||| || ||| ||||| ||     
T  54277241 ctgtttagattgacttatttgaacttatctagtgacataaacacttatgagactgttagcgagagcttacagaaacagcttatcacatgttcataagtta 54277340  T
Q  326 ttttcagctta 336  Q
    |||||||||||    
T  54277341 ttttcagctta 54277351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 386 - 428
Target Start/End: Complemental strand, 54414914 - 54414872
Alignment:
Q  386 tttattaaaataatggcttatacataagcacatatatgataag 428  Q
    ||||| |||||||| |||||||||||||||| |||||||||||    
T  54414914 tttataaaaataatagcttatacataagcacttatatgataag 54414872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 363
Target Start/End: Original strand, 2977995 - 2978032
Alignment:
Q  326 ttttcagcttattttcataagttctctatgatagctta 363  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  2977995 ttttcagcttattttcataagttttctaggatagctta 2978032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 372
Target Start/End: Complemental strand, 2996712 - 2996579
Alignment:
Q  239 cttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttatt 338  Q
    |||||||||| || | || |||||| |  |||| ||| |||||||| ||||||| ||  |||||  ||||||| |||||||||  | |||||| ||||||    
T  2996712 cttatttgaacttatttattgacataagcacttttgagactgtttgagagagcttatgaaaacaacttatgacatgtccataagcttttttcaacttatt 2996613  T
Q  339 ttcataagttctctatgatagcttacgcaaacaa 372  Q
    |||||| | |||| | ||||||||| | ||||||    
T  2996612 ttcatacgctctccaagatagcttatgaaaacaa 2996579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 345
Target Start/End: Original strand, 3176064 - 3176141
Alignment:
Q  268 acttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataa 345  Q
    |||||||| ||||||| |||||||| ||  |||||  ||||| | |||| |||| ||||||||||||||||| |||||    
T  3176064 acttgtgaaactgtttaggagagcttatgaaaacatcttatgtcatgtctataagttgttttcagcttatttccataa 3176141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 362
Target Start/End: Original strand, 5131255 - 5131304
Alignment:
Q  313 tgtccataaattgttttcagcttattttcataagttctctatgatagctt 362  Q
    ||||||||| ||||||||||||||||| |||||| |||| | ||||||||    
T  5131255 tgtccataagttgttttcagcttatttccataagctctccaggatagctt 5131304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 469
Target Start/End: Original strand, 8422940 - 8423025
Alignment:
Q  384 cttttattaaaataatggcttatacataagcacatatatgataagtgatcatgcaataagtgcttaactaagctgtttacccaaac 469  Q
    ||||| ||| || ||| ||||||||||||||||||||||||||  |||| |||| ||||   ||||| |||| |||||| ||||||    
T  8422940 ctttttttataaaaatagcttatacataagcacatatatgatacatgattatgctataaacacttaattaagttgtttatccaaac 8423025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 353
Target Start/End: Original strand, 8469373 - 8469422
Alignment:
Q  304 tttatgacgtgtccataaattgttttcagcttattttcataagttctcta 353  Q
    |||||||| ||| ||||| ||||||||||||||||| |||| ||||||||    
T  8469373 tttatgacatgttcataagttgttttcagcttatttccataggttctcta 8469422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 362
Target Start/End: Original strand, 13126537 - 13126630
Alignment:
Q  270 ttgtgatactgtttgggagagctgatataaacagtttatgacgtgtc-cataaattgttttcagcttattttcataagttctctatgatagctt 362  Q
    |||||| ||||||||| ||| || ||| |||||| ||||||| | |  |||||  | |||||||||||||||||||||||||| | ||||||||    
T  13126537 ttgtgagactgtttggaagaacttataaaaacagcttatgacatttatcataagcttttttcagcttattttcataagttctcgaagatagctt 13126630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 350
Target Start/End: Complemental strand, 25332836 - 25332803
Alignment:
Q  317 cataaattgttttcagcttattttcataagttct 350  Q
    ||||| ||||||||||||||||||||||||||||    
T  25332836 cataagttgttttcagcttattttcataagttct 25332803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 346
Target Start/End: Complemental strand, 30024779 - 30024738
Alignment:
Q  305 ttatgacgtgtccataaattgttttcagcttattttcataag 346  Q
    ||||||| |||||||| | |||||||||||||||||||||||    
T  30024779 ttatgacatgtccatatactgttttcagcttattttcataag 30024738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 36577462 - 36577523
Alignment:
Q  228 gtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggaga 289  Q
    ||||||| ||||||||||||||||||||| ||| || |  |||||||| ||||||| |||||    
T  36577462 gtttggattgacttatttgaatttgtctattgagataagcacttgtgagactgtttcggaga 36577523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 353
Target Start/End: Complemental strand, 8469013 - 8468973
Alignment:
Q  313 tgtccataaattgttttcagcttattttcataagttctcta 353  Q
    ||||||||| |||||||||| ||||||||||||| ||||||    
T  8469013 tgtccataagttgttttcagattattttcataagctctcta 8468973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 372
Target Start/End: Original strand, 11158365 - 11158421
Alignment:
Q  316 ccataaattgttttcagcttattttcataagttctctatgatagcttacgcaaacaa 372  Q
    ||||||| |||||||||||||||| || ||| |||||| ||||||||| | ||||||    
T  11158365 ccataaactgttttcagcttatttccacaagctctctaagatagcttatgaaaacaa 11158421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 227 - 363
Target Start/End: Complemental strand, 14011385 - 14011249
Alignment:
Q  227 tgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgt 326  Q
    |||||||| | |||| |||||| || |||||| |||| |  || ||| | ||| |||||||||||| ||  ||| ||||||| || ||||  |||  |||    
T  14011385 tgtttggatttacttctttgaacttatctacttacataagcacatgtaaaactatttgggagagcttatgcaaagagtttatcacatgtctttaagctgt 14011286  T
Q  327 tttcagcttattttcataagttctctatgatagctta 363  Q
    ||||||||||||| |||||| |||| | |||||||||    
T  14011285 tttcagcttatttccataagctctccaagatagctta 14011249  T

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Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 292
Target Start/End: Original strand, 18628481 - 18628537
Alignment:
Q  236 tgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagct 292  Q
    |||| |||||||  || ||||||||||| || |||||||| ||||||||||||||||    
T  18628481 tgacgtatttgagcttatctactgacataaacacttgtgagactgtttgggagagct 18628537  T

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Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 351
Target Start/End: Complemental strand, 21879659 - 21879631
Alignment:
Q  323 ttgttttcagcttattttcataagttctc 351  Q
    |||||||||||||||||||||||||||||    
T  21879659 ttgttttcagcttattttcataagttctc 21879631  T

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Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 363
Target Start/End: Complemental strand, 22662065 - 22662025
Alignment:
Q  323 ttgttttcagcttattttcataagttctctatgatagctta 363  Q
    |||||||| ||||||| |||||||||||| |||||||||||    
T  22662065 ttgttttctgcttattgtcataagttctccatgatagctta 22662025  T

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Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 363
Target Start/End: Complemental strand, 22666544 - 22666504
Alignment:
Q  323 ttgttttcagcttattttcataagttctctatgatagctta 363  Q
    |||||||| ||||||| |||||||||||| |||||||||||    
T  22666544 ttgttttctgcttattgtcataagttctccatgatagctta 22666504  T

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Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 470
Target Start/End: Complemental strand, 24193534 - 24193466
Alignment:
Q  402 cttatacataagcacatatatgataagtgatcatgcaataagtgcttaactaagctgtttacccaaaca 470  Q
    |||||||||||| || ||||||||||| | | |||| ||||||||| || |||| |||||| |||||||    
T  24193534 cttatacataagtacttatatgataagcgtttatgctataagtgctcaattaagttgtttatccaaaca 24193466  T

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Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 346
Target Start/End: Original strand, 32831746 - 32831793
Alignment:
Q  298 aaacagtttatgacgtgtccataaattgttttcagcttattttcataag 346  Q
    |||||| |||| |||||||||||||| |||| |||||||||||||||||    
T  32831746 aaacaggttatcacgtgtccataaatcgttt-cagcttattttcataag 32831793  T

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Target: scaffold0159 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 305 - 362
Target Start/End: Complemental strand, 27074 - 27017
Alignment:
Q  305 ttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctt 362  Q
    ||||||| ||| |||||| |||||||||||||||| |||||| |||||||||||||||    
T  27074 ttatgacatgtgcataaactgttttcagcttatttccataagctctctatgatagctt 27017  T

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Target: scaffold0020 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 226 - 363
Target Start/End: Original strand, 159891 - 160028
Alignment:
Q  226 ctgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattg 325  Q
    ||||||||| || |||||||||  || |||||| | || || |||||||| ||| ||| ||||| || ||  |||||||||||||| |||| ||||   |    
T  159891 ctgtttggattggcttatttgagcttatctactaatataaacacttgtgaaactattttggagaactaatggaaacagtttatgacatgtctataagcag 159990  T
Q  326 ttttcagcttattttcataagttctctatgatagctta 363  Q
    |||||||||||||| || ||| ||| || |||||||||    
T  159991 ttttcagcttatttccacaagctctttaggatagctta 160028  T

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Target: scaffold0311 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 345
Target Start/End: Original strand, 10564 - 10654
Alignment:
Q  255 tactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataa 345  Q
    ||||||||| |  |||||||| ||||||||  | |||| || ||||||  | ||||| ||||||||| ||||||||||||||||| |||||    
T  10564 tactgacataagtacttgtgagactgtttgacaaagcttatgtaaacaactaatgacatgtccataagttgttttcagcttatttccataa 10654  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 372
Target Start/End: Complemental strand, 306406 - 306332
Alignment:
Q  298 aaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagcttacgcaaacaa 372  Q
    |||||| ||||||| || ||||||  ||||||||||||| || |||||| |||||| ||||||||| | ||||||    
T  306406 aaacagcttatgacatgcccataagctgttttcagcttacttacataagctctctaggatagcttatgaaaacaa 306332  T

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Target: scaffold0147 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 362
Target Start/End: Original strand, 12701 - 12758
Alignment:
Q  305 ttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctt 362  Q
    ||||||| ||||||||| ||||||||||||||  | |||||| |||||| ||||||||    
T  12701 ttatgacatgtccataagttgttttcagcttagctccataagctctctaagatagctt 12758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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