View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0134_1D_low_6 (Length: 476)

Name: NF0134_1D_low_6
Description: NF0134_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0134_1D_low_6
NF0134_1D_low_6
[»] chr2 (46 HSPs)
chr2 (18-476)||(35993114-35993572)
chr2 (246-347)||(32364693-32364794)
chr2 (202-351)||(15120186-15120335)
chr2 (214-339)||(36415604-36415728)
chr2 (202-352)||(8017436-8017586)
chr2 (204-449)||(43456627-43456877)
chr2 (281-338)||(5781685-5781742)
chr2 (281-346)||(10285868-10285933)
chr2 (281-336)||(10285373-10285428)
chr2 (252-318)||(1494414-1494480)
chr2 (203-313)||(33197180-33197290)
chr2 (261-339)||(35378993-35379071)
chr2 (244-321)||(9996771-9996848)
chr2 (253-322)||(11063520-11063589)
chr2 (294-339)||(42457963-42458008)
chr2 (212-327)||(5902479-5902592)
chr2 (229-325)||(18884896-18884992)
chr2 (195-327)||(40158745-40158877)
chr2 (244-318)||(5759535-5759609)
chr2 (293-336)||(7928308-7928351)
chr2 (244-351)||(12313133-12313240)
chr2 (274-337)||(29316765-29316828)
chr2 (257-320)||(33256774-33256837)
chr2 (289-348)||(40279413-40279472)
chr2 (281-348)||(43065447-43065514)
chr2 (302-349)||(45229516-45229563)
chr2 (281-347)||(1893278-1893344)
chr2 (293-355)||(3227692-3227754)
chr2 (281-335)||(5826236-5826290)
chr2 (292-322)||(36236450-36236480)
chr2 (246-339)||(41293124-41293218)
chr2 (281-323)||(44606107-44606149)
chr2 (274-339)||(680518-680583)
chr2 (244-313)||(787373-787442)
chr2 (274-339)||(1647251-1647316)
chr2 (293-338)||(3611242-3611287)
chr2 (378-447)||(4550657-4550726)
chr2 (274-327)||(5902602-5902655)
chr2 (281-322)||(12147489-12147530)
chr2 (274-339)||(33192217-33192282)
chr2 (274-327)||(42621365-42621418)
chr2 (378-447)||(43635221-43635290)
chr2 (293-321)||(15978018-15978046)
chr2 (308-352)||(37474758-37474802)
chr2 (253-297)||(39962268-39962312)
chr2 (279-339)||(44443336-44443396)
[»] chr1 (59 HSPs)
chr1 (202-326)||(30815572-30815695)
chr1 (206-339)||(10199330-10199463)
chr1 (274-339)||(27140493-27140558)
chr1 (281-339)||(3224438-3224496)
chr1 (202-348)||(12564417-12564563)
chr1 (217-339)||(32515374-32515496)
chr1 (205-278)||(5157148-5157221)
chr1 (202-315)||(23373231-23373343)
chr1 (274-339)||(28689442-28689507)
chr1 (275-352)||(36151496-36151573)
chr1 (254-339)||(37941955-37942040)
chr1 (293-338)||(47885042-47885087)
chr1 (203-327)||(6292520-6292643)
chr1 (246-322)||(28935838-28935914)
chr1 (281-328)||(15687083-15687130)
chr1 (281-348)||(25479587-25479654)
chr1 (301-348)||(34952221-34952268)
chr1 (231-322)||(38170637-38170728)
chr1 (202-289)||(44375277-44375364)
chr1 (274-352)||(11639406-11639484)
chr1 (254-339)||(6279414-6279499)
chr1 (212-321)||(15579515-15579624)
chr1 (278-339)||(16981930-16981991)
chr1 (203-296)||(34536216-34536309)
chr1 (246-327)||(41195155-41195236)
chr1 (281-341)||(3319930-3319989)
chr1 (274-322)||(11695893-11695941)
chr1 (244-352)||(17420205-17420313)
chr1 (289-337)||(22813615-22813663)
chr1 (254-338)||(30259456-30259540)
chr1 (202-322)||(33723300-33723420)
chr1 (293-337)||(38503474-38503518)
chr1 (202-321)||(3597199-3597318)
chr1 (203-322)||(4868432-4868550)
chr1 (281-348)||(27887115-27887182)
chr1 (244-327)||(31517700-31517783)
chr1 (281-327)||(5886991-5887037)
chr1 (293-339)||(7137007-7137053)
chr1 (281-339)||(12477284-12477342)
chr1 (202-260)||(24460319-24460377)
chr1 (289-339)||(28262624-28262674)
chr1 (193-327)||(28482142-28482276)
chr1 (289-335)||(33975589-33975635)
chr1 (293-339)||(34290251-34290297)
chr1 (281-339)||(46252679-46252737)
chr1 (302-348)||(49888773-49888819)
chr1 (274-327)||(4768819-4768872)
chr1 (244-321)||(29723522-29723599)
chr1 (246-339)||(37811867-37811960)
chr1 (246-311)||(38001639-38001704)
chr1 (202-326)||(38867751-38867873)
chr1 (281-338)||(49175635-49175692)
chr1 (274-322)||(4549262-4549310)
chr1 (283-347)||(6231815-6231879)
chr1 (379-439)||(6659591-6659651)
chr1 (274-322)||(7761601-7761649)
chr1 (299-339)||(23402046-23402086)
chr1 (299-339)||(35590907-35590947)
chr1 (279-339)||(43113126-43113186)
[»] chr3 (29 HSPs)
chr3 (248-352)||(37273136-37273240)
chr3 (282-348)||(33883748-33883814)
chr3 (215-336)||(24624228-24624349)
chr3 (216-347)||(31010409-31010540)
chr3 (276-339)||(39602202-39602265)
chr3 (274-339)||(1217790-1217855)
chr3 (244-321)||(32103477-32103554)
chr3 (289-352)||(2719470-2719533)
chr3 (244-335)||(43115075-43115166)
chr3 (302-339)||(25075081-25075118)
chr3 (290-339)||(34924544-34924593)
chr3 (253-334)||(51206467-51206548)
chr3 (300-348)||(21367673-21367721)
chr3 (274-338)||(23785271-23785335)
chr3 (283-327)||(41633387-41633431)
chr3 (255-339)||(51130765-51130849)
chr3 (377-452)||(29094256-29094331)
chr3 (301-339)||(44488898-44488936)
chr3 (293-327)||(50946295-50946329)
chr3 (282-339)||(6483816-6483873)
chr3 (212-321)||(11040542-11040651)
chr3 (302-339)||(28795871-28795908)
chr3 (302-339)||(53789479-53789516)
chr3 (246-322)||(11039301-11039377)
chr3 (246-322)||(20194995-20195070)
chr3 (203-315)||(20210847-20210959)
chr3 (300-340)||(24085354-24085394)
chr3 (216-316)||(41724250-41724350)
chr3 (254-347)||(42817192-42817287)
[»] chr7 (29 HSPs)
chr7 (202-349)||(28691754-28691900)
chr7 (203-307)||(30751566-30751670)
chr7 (244-322)||(39345503-39345581)
chr7 (246-327)||(48157082-48157163)
chr7 (244-315)||(33894666-33894737)
chr7 (274-352)||(9038114-9038191)
chr7 (293-355)||(34035916-34035978)
chr7 (289-339)||(40530414-40530464)
chr7 (377-447)||(49060420-49060490)
chr7 (296-349)||(33552862-33552915)
chr7 (263-327)||(7244707-7244771)
chr7 (205-329)||(12234810-12234934)
chr7 (377-452)||(31341069-31341144)
chr7 (256-339)||(42281486-42281569)
chr7 (245-339)||(27626084-27626178)
chr7 (289-339)||(39280984-39281034)
chr7 (281-327)||(46082063-46082109)
chr7 (293-338)||(2825240-2825285)
chr7 (274-339)||(5628557-5628621)
chr7 (202-339)||(30535578-30535715)
chr7 (294-339)||(37064230-37064275)
chr7 (302-347)||(37064482-37064527)
chr7 (281-322)||(44808190-44808231)
chr7 (281-322)||(47134754-47134795)
chr7 (244-348)||(3610700-3610804)
chr7 (274-314)||(12834952-12834992)
chr7 (203-327)||(22387815-22387939)
chr7 (284-348)||(24363601-24363665)
chr7 (300-352)||(39907805-39907857)
[»] chr8 (29 HSPs)
chr8 (212-322)||(6950354-6950464)
chr8 (255-339)||(9540967-9541051)
chr8 (244-339)||(11569417-11569512)
chr8 (373-453)||(11415028-11415108)
chr8 (283-339)||(30389114-30389170)
chr8 (300-347)||(14247240-14247287)
chr8 (253-339)||(4055585-4055671)
chr8 (202-328)||(9700027-9700153)
chr8 (274-339)||(2364483-2364548)
chr8 (274-339)||(8062344-8062409)
chr8 (248-336)||(42215270-42215358)
chr8 (281-336)||(25869263-25869318)
chr8 (244-327)||(44401588-44401670)
chr8 (293-327)||(3536954-3536988)
chr8 (281-339)||(11795107-11795165)
chr8 (281-339)||(20672765-20672823)
chr8 (244-337)||(24326050-24326141)
chr8 (215-321)||(30191072-30191178)
chr8 (289-330)||(44033556-44033595)
chr8 (281-322)||(3600735-3600776)
chr8 (205-266)||(8535976-8536037)
chr8 (281-322)||(14339602-14339643)
chr8 (281-329)||(2594994-2595042)
chr8 (253-313)||(7878496-7878555)
chr8 (202-351)||(12851179-12851330)
chr8 (377-437)||(12972746-12972806)
chr8 (246-337)||(29168018-29168110)
chr8 (274-334)||(41606893-41606953)
chr8 (202-318)||(41620210-41620325)
[»] chr6 (24 HSPs)
chr6 (229-339)||(34939759-34939869)
chr6 (202-339)||(281766-281903)
chr6 (226-312)||(2732189-2732275)
chr6 (202-327)||(7785662-7785787)
chr6 (377-450)||(9027454-9027527)
chr6 (281-322)||(9027610-9027651)
chr6 (207-348)||(33067164-33067305)
chr6 (300-339)||(835265-835304)
chr6 (302-340)||(160970-161008)
chr6 (248-322)||(2023350-2023424)
chr6 (281-327)||(3528830-3528876)
chr6 (281-339)||(6647402-6647460)
chr6 (280-322)||(29296291-29296333)
chr6 (244-313)||(3775088-3775157)
chr6 (289-346)||(24836207-24836264)
chr6 (216-297)||(27857415-27857496)
chr6 (289-322)||(27894078-27894111)
chr6 (282-327)||(27909636-27909681)
chr6 (300-341)||(31624957-31624998)
chr6 (263-339)||(4420658-4420734)
chr6 (300-352)||(8364992-8365044)
chr6 (302-338)||(12230377-12230413)
chr6 (396-452)||(22691657-22691713)
chr6 (299-347)||(31671089-31671137)
[»] chr5 (33 HSPs)
chr5 (274-339)||(41957441-41957506)
chr5 (215-348)||(40534205-40534338)
chr5 (202-322)||(41830884-41831004)
chr5 (289-352)||(7319013-7319076)
chr5 (244-339)||(38104817-38104912)
chr5 (377-451)||(26516174-26516248)
chr5 (282-352)||(34975366-34975436)
chr5 (218-319)||(1019400-1019501)
chr5 (279-327)||(19138712-19138760)
chr5 (202-322)||(31208504-31208624)
chr5 (300-339)||(4014440-4014479)
chr5 (289-352)||(7319408-7319471)
chr5 (293-324)||(8334601-8334632)
chr5 (288-327)||(14182385-14182424)
chr5 (246-337)||(28586728-28586819)
chr5 (253-339)||(4619722-4619808)
chr5 (246-339)||(7984984-7985078)
chr5 (274-336)||(8177522-8177584)
chr5 (289-347)||(10280603-10280661)
chr5 (293-327)||(34160758-34160792)
chr5 (281-339)||(36639537-36639595)
chr5 (270-348)||(40205060-40205138)
chr5 (289-339)||(42582511-42582561)
chr5 (274-327)||(1899181-1899234)
chr5 (244-321)||(10272391-10272468)
chr5 (289-338)||(12425587-12425636)
chr5 (274-339)||(13605363-13605428)
chr5 (274-327)||(14331394-14331447)
chr5 (303-340)||(43300892-43300929)
chr5 (274-322)||(13604839-13604887)
chr5 (274-322)||(31694550-31694598)
chr5 (299-339)||(32059374-32059414)
chr5 (282-322)||(35963273-35963313)
[»] chr4 (41 HSPs)
chr4 (202-348)||(11264307-11264453)
chr4 (274-339)||(28614798-28614863)
chr4 (205-322)||(25896812-25896933)
chr4 (247-315)||(52754638-52754706)
chr4 (377-444)||(46053583-46053650)
chr4 (244-339)||(50799990-50800084)
chr4 (202-287)||(7367972-7368057)
chr4 (246-339)||(44319964-44320057)
chr4 (203-355)||(21043155-21043306)
chr4 (300-336)||(29601024-29601060)
chr4 (291-335)||(47970315-47970359)
chr4 (274-329)||(24929518-24929573)
chr4 (212-327)||(33534097-33534212)
chr4 (379-438)||(39063768-39063827)
chr4 (289-352)||(53673663-53673726)
chr4 (246-336)||(6987703-6987793)
chr4 (244-322)||(42461283-42461361)
chr4 (202-339)||(46415709-46415847)
chr4 (360-446)||(51555970-51556056)
chr4 (255-325)||(53155289-53155359)
chr4 (202-312)||(54277241-54277351)
chr4 (362-404)||(54414872-54414914)
chr4 (302-339)||(2977995-2978032)
chr4 (215-348)||(2996579-2996712)
chr4 (244-321)||(3176064-3176141)
chr4 (289-338)||(5131255-5131304)
chr4 (360-445)||(8422940-8423025)
chr4 (280-329)||(8469373-8469422)
chr4 (246-338)||(13126537-13126630)
chr4 (293-326)||(25332803-25332836)
chr4 (281-322)||(30024738-30024779)
chr4 (204-265)||(36577462-36577523)
chr4 (289-329)||(8468973-8469013)
chr4 (292-348)||(11158365-11158421)
chr4 (203-339)||(14011249-14011385)
chr4 (212-268)||(18628481-18628537)
chr4 (299-327)||(21879631-21879659)
chr4 (299-339)||(22662025-22662065)
chr4 (299-339)||(22666504-22666544)
chr4 (378-446)||(24193466-24193534)
chr4 (274-322)||(32831746-32831793)
[»] scaffold0159 (1 HSPs)
scaffold0159 (281-338)||(27017-27074)
[»] scaffold0020 (1 HSPs)
scaffold0020 (202-339)||(159891-160028)
[»] scaffold0311 (1 HSPs)
scaffold0311 (231-321)||(10564-10654)
[»] scaffold0003 (1 HSPs)
scaffold0003 (274-348)||(306332-306406)
[»] scaffold0147 (1 HSPs)
scaffold0147 (281-338)||(12701-12758)


Alignment Details
Target: chr2 (Bit Score: 447; Significance: 0; HSPs: 46)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 18 - 476
Target Start/End: Original strand, 35993114 - 35993572
Alignment:
Q  18 acatcagtgatggcttgtatcgtgaatttagcaaatcaatttcaacgatcagattactatcaatggtcaagatttctctaaagtcaccttttgactacgg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35993114 acatcagtgatggcttgtatcgtgaatttagcaaatcaatttcaacgatcagattactatcaatggtcaagatttctctaaagtcaccttttgactacgg 35993213  T
Q  118 ggaatacattcacgatcgtgaatgccattgtcgtaacatcctaaaagtcccctccaaccccaacacacacagacaattatggtactgtttggaatgactt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  35993214 ggaatacattcacgatcgtgaatgccattgtcgtaacatcctaaaagtcccctccaaccccaacacacacagacaattacggtactgtttggaatgactt 35993313  T
Q  218 atttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttc 317  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35993314 atttgaatttgtctaccgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttc 35993413  T
Q  318 ataagttctctatgatagcttacgcaaacaatttaactctaccttttattaaaataatggcttatacataagcacatatatgataagtgatcatgcaata 417  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35993414 ataagttctctatgatagcttatgcaaacaatttaactctaccttttattaaaataatggcttatacataagcacatatatgataagtgatcatgcaata 35993513  T
Q  418 agtgcttaactaagctgtttacccaaacagggcctgtatctcattctatcttgttctat 476  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35993514 agtgcttaactaagctgtttacccaaacagggcctgtatctcattctatcttgttctat 35993572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 246 - 347
Target Start/End: Original strand, 32364693 - 32364794
Alignment:
Q  246 ttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagcttacgcaaa 345  Q
    |||||| | |||||||||||||| ||| || ||| ||||||||||||||| | |||||||||||||||||||||||| |||||| ||||| ||||| |||    
T  32364693 ttgtgaaattgtttgggagagcttataaaaccagcttatgacgtgtccatgagttgttttcagcttattttcataagatctctaagatagtttacgtaaa 32364792  T
Q  346 ca 347  Q
    ||    
T  32364793 ca 32364794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 202 - 351
Target Start/End: Complemental strand, 15120335 - 15120186
Alignment:
Q  202 ctgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattg 301  Q
    ||||||||| ||||||||||||| || ||||||  ||| || | ||||||  ||||||||||||||| ||  |||||  ||||||| ||| ||| |  ||    
T  15120335 ctgtttggattgacttatttgaacttatctactagcataaacagttgtgaatctgtttgggagagcttatggaaacaacttatgacatgttcattagctg 15120236  T
Q  302 ttttcagcttattttcataagttctctatgatagcttacgcaaacaattt 351  Q
    |||| |||||||||| ||||| |||| ||||||||||||| |||||||||    
T  15120235 ttttaagcttattttgataagctctccatgatagcttacgaaaacaattt 15120186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 214 - 339
Target Start/End: Original strand, 36415604 - 36415728
Alignment:
Q  214 acttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttat 313  Q
    ||||||||||| ||||| |||||| | || |||||||| | ||||||||||| || ||| |||||  |||| || ||| ||||| ||||||||| |||||    
T  36415604 acttatttgaacttgtcgactgacttaaatacttgtgacattgtttgggagaacttatagaaacaacttat-acatgtgcataagttgttttcatcttat 36415702  T
Q  314 tttcataagttctctatgatagctta 339  Q
    |||| ||||||||  |||||||||||    
T  36415703 tttcgtaagttctacatgatagctta 36415728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 202 - 352
Target Start/End: Complemental strand, 8017586 - 8017436
Alignment:
Q  202 ctgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattg 301  Q
    ||||||||| ||||||||||||  || |||| |||||| |  |||||||  | | ||||||||| || ||  |||||| ||||||  ||| ||||| |||    
T  8017586 ctgtttggattgacttatttgaggttatctattgacataagcacttgtgcgattatttgggagaacttatgaaaacagcttatgatatgttcataatttg 8017487  T
Q  302 ttttcagcttattttcataagttctctatgatagcttacgcaaacaattta 352  Q
    ||||| || ||||||||||||||||| | ||||||||| | ||||| ||||    
T  8017486 ttttctgcgtattttcataagttctccaagatagcttatgaaaacagttta 8017436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 204 - 449
Target Start/End: Original strand, 43456627 - 43456877
Alignment:
Q  204 gtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgtt 303  Q
    ||||||| | ||||||||||| || | |||| |||| || |||||| | ||||||||  ||||||  |  |||||  | ||||| |||||||||| ||||    
T  43456627 gtttggatttacttatttgaacttatttactcacataaacacttgtaagactgtttgaaagagcttgtgaaaacaactcatgacatgtccataaactgtt 43456726  T
Q  304 ttcagcttattttcataagttctctatgatagcttacgcaaacaatttaactcta-----ccttttattaaaataatggcttatacataagcacatatat 398  Q
    |||||||||||| |||| ||| |  | ||||||||||  ||||||||| ||| ||     |||||| ||| || ||  |||||||||| ||||| ||| |    
T  43456727 ttcagcttatttccatatgtttttcaagatagcttacagaaacaatttgactttatatttccttttgttataaaaaaagcttatacattagcacttatgt 43456826  T
Q  399 gataagtgatcatgcaataagtgcttaactaagctgtttacccaaacaggg 449  Q
    ||||| || | |||| |||||||||||| |||| | |||| | ||||||||    
T  43456827 gataaatgcttatgctataagtgcttaattaagttttttatcgaaacaggg 43456877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 281 - 338
Target Start/End: Complemental strand, 5781742 - 5781685
Alignment:
Q  281 ttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctt 338  Q
    ||||||| ||| |||||| |||||||||||||||| |||||| |||||||||||||||    
T  5781742 ttatgacatgtgcataaactgttttcagcttatttccataagctctctatgatagctt 5781685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 281 - 346
Target Start/End: Complemental strand, 10285933 - 10285868
Alignment:
Q  281 ttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagcttacgcaaac 346  Q
    ||||||| |||||||||  |||||||| ||||||| ||||||||||||||| ||||||| ||||||    
T  10285933 ttatgacatgtccataagctgttttcaacttatttccataagttctctatgttagcttatgcaaac 10285868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 281 - 336
Target Start/End: Complemental strand, 10285428 - 10285373
Alignment:
Q  281 ttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagc 336  Q
    ||||||| |||||||||  |||||||||||||||||| |||||| |||||||||||    
T  10285428 ttatgacatgtccataagctgttttcagcttattttcttaagttatctatgatagc 10285373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 318
Target Start/End: Original strand, 1494414 - 1494480
Alignment:
Q  252 tactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttca 318  Q
    ||||||||| ||||||| ||  |||||| ||||||| |||||||||| |||||| ||||||||||||    
T  1494414 tactgtttgagagagcttatgaaaacagcttatgacatgtccataaactgtttttagcttattttca 1494480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 313
Target Start/End: Original strand, 33197180 - 33197290
Alignment:
Q  203 tgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgt 302  Q
    |||||||| |||||||||||| ||| || ||||||||| | |||||||| ||| |||| ||||| | ||||| |||||||| ||  ||||||| |  ||     
T  33197180 tgtttggattgacttatttgagtttatcaactgacattgatacttgtgagactatttgagagaggttatatagacagtttacgatatgtccatgacctgc 33197279  T
Q  303 tttcagcttat 313  Q
    |||||||||||    
T  33197280 tttcagcttat 33197290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 339
Target Start/End: Original strand, 35378993 - 35379071
Alignment:
Q  261 ggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 339  Q
    |||||||| ||  |||||| | ||||| ||| ||||| |||||||||||||||||||||||| |||| | |||||||||    
T  35378993 ggagagcttatgaaaacagctgatgacttgttcataagttgttttcagcttattttcataagctctccaagatagctta 35379071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 244 - 321
Target Start/End: Complemental strand, 9996848 - 9996771
Alignment:
Q  244 acttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataa 321  Q
    |||||||| |||| ||||||||||| ||| |||||  ||||||| |  |||||||||||| ||| |||||||||||||    
T  9996848 acttgtgagactgcttgggagagcttatagaaacaacttatgacatacccataaattgttctcaacttattttcataa 9996771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 253 - 322
Target Start/End: Complemental strand, 11063589 - 11063520
Alignment:
Q  253 actgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataag 322  Q
    ||||||||| |||||| ||  |||||  ||||||| ||||||||| ||||||| ||||||||||||||||    
T  11063589 actgtttggaagagcttatggaaacatattatgacatgtccataagttgtttttagcttattttcataag 11063520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 294 - 339
Target Start/End: Complemental strand, 42458008 - 42457963
Alignment:
Q  294 ataaattgttttcagcttattttcataagttctctatgatagctta 339  Q
    |||| |||||||||||||||||||||| |||||||| |||||||||    
T  42458008 ataagttgttttcagcttattttcatatgttctctaagatagctta 42457963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 327
Target Start/End: Original strand, 5902479 - 5902592
Alignment:
Q  212 tgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagctt 311  Q
    ||||||||||||| || ||||  | ||| || |||||||| ||||||||| ||| || ||  |||||| ||||||| ||| |||||| ||||||||||||    
T  5902479 tgacttatttgaacttatcta--ggcataaacacttgtgagactgtttggaagaacttatgaaaacagcttatgacatgttcataaactgttttcagctt 5902576  T
Q  312 attttcataagttctc 327  Q
     |||| ||| ||||||    
T  5902577 gtttttatatgttctc 5902592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 229 - 325
Target Start/End: Complemental strand, 18884992 - 18884896
Alignment:
Q  229 tctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttc 325  Q
    |||| |||||| | ||||||| |  ||||||||||||||| ||| |||||| ||||||| | ||||| |  ||||||||| |||||| |||||||||    
T  18884992 tctattgacataagaacttgtaaggctgtttgggagagcttatagaaacagcttatgacatttccattagctgttttcagattatttccataagttc 18884896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 327
Target Start/End: Complemental strand, 40158877 - 40158745
Alignment:
Q  195 tatggtactgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtcca 294  Q
    |||||| || |||||| || |||||||||   | ||||||||||| | ||||||||| |||| ||||| || || ||  |||||| ||||||| |||  |    
T  40158877 tatggttctatttggattggcttatttgagcatatctactgacataagaacttgtgagactgattgggggaacttatgaaaacagcttatgacatgttta 40158778  T
Q  295 taaattgttttcagcttattttcataagttctc 327  Q
    ||| |||||||||||||| || |||||| ||||    
T  40158777 taagttgttttcagcttaattacataagctctc 40158745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 318
Target Start/End: Original strand, 5759535 - 5759609
Alignment:
Q  244 acttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgt-tttcagcttattttca 318  Q
    |||||||| |||||||||||||||| ||  |||||| ||| ||| ||||||||| |||| ||||||||||||||||    
T  5759535 acttgtgagactgtttgggagagcttatggaaacagctta-gacatgtccataagttgtgtttcagcttattttca 5759609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 336
Target Start/End: Original strand, 7928308 - 7928351
Alignment:
Q  293 cataaattgttttcagcttattttcataagttctctatgatagc 336  Q
    ||||| ||||||||||||||||||||||||||||| | ||||||    
T  7928308 cataagttgttttcagcttattttcataagttctccaagatagc 7928351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 351
Target Start/End: Original strand, 12313133 - 12313240
Alignment:
Q  244 acttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagcttacgca 343  Q
    |||||||| | |||||||||||  | ||  |||||| ||||| | ||| ||||| ||| ||||| |||||||||||||| |||| | ||||||||| | |    
T  12313133 acttgtgagattgtttgggagaatttatgaaaacagcttatgccatgttcataagttgatttcaccttattttcataagctctccaagatagcttatgta 12313232  T
Q  344 aacaattt 351  Q
    ||||||||    
T  12313233 aacaattt 12313240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 337
Target Start/End: Original strand, 29316765 - 29316828
Alignment:
Q  274 aaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagct 337  Q
    |||||| ||||||| ||| ||||| || |||||||||||||| ||||||||||| | |||||||    
T  29316765 aaacagcttatgacatgttcataagttcttttcagcttatttccataagttctccaagatagct 29316828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 320
Target Start/End: Complemental strand, 33256837 - 33256774
Alignment:
Q  257 tttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcata 320  Q
    |||||||||||| ||  |||||| ||||||| ||| |||||| |||| ||||||||||||||||    
T  33256837 tttgggagagcttatgaaaacagcttatgacatgttcataaactgttctcagcttattttcata 33256774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 348
Target Start/End: Complemental strand, 40279472 - 40279413
Alignment:
Q  289 tgtccataaattgttttcagcttattttcataagttctctatgatagcttacgcaaacaa 348  Q
    |||||||||| |||||||| ||||||||||||||||||| |  |||||||| | ||||||    
T  40279472 tgtccataaactgttttcaacttattttcataagttctccaatatagcttatgaaaacaa 40279413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 348
Target Start/End: Original strand, 43065447 - 43065514
Alignment:
Q  281 ttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagcttacgcaaacaa 348  Q
    ||||||| |||||||||||||||||||||||||||  ||||| |||| | |||| |||| | ||||||    
T  43065447 ttatgacatgtccataaattgttttcagcttatttcaataagctctccacgataacttatgaaaacaa 43065514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 349
Target Start/End: Complemental strand, 45229563 - 45229516
Alignment:
Q  302 ttttcagcttattttcataagttctctatgatagcttacgcaaacaat 349  Q
    |||||||||||||||||||||||||| | ||||||||| | |||||||    
T  45229563 ttttcagcttattttcataagttctcgaagatagcttatgaaaacaat 45229516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 347
Target Start/End: Original strand, 1893278 - 1893344
Alignment:
Q  281 ttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagcttacgcaaaca 347  Q
    ||||||| ||| ||||| || ||||||||||||||||| |||||||| | |||||||| || |||||    
T  1893278 ttatgacatgtacataagttattttcagcttattttcacaagttctccaagatagcttccgaaaaca 1893344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 355
Target Start/End: Original strand, 3227692 - 3227754
Alignment:
Q  293 cataaattgttttcagcttattttcataagttctctatgatagcttacgcaaacaatttaact 355  Q
    |||||||||||||||||||||||||| ||  |||| |  |||||||| | |||||||||||||    
T  3227692 cataaattgttttcagcttattttcaaaatctctccaaaatagcttatgaaaacaatttaact 3227754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 335
Target Start/End: Complemental strand, 5826290 - 5826236
Alignment:
Q  281 ttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatag 335  Q
    ||||||| ||| |||||| |||||||||||||||| | |||| ||||||||||||    
T  5826290 ttatgacatgtgcataaactgttttcagcttatttacgtaagctctctatgatag 5826236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 322
Target Start/End: Original strand, 36236450 - 36236480
Alignment:
Q  292 ccataaattgttttcagcttattttcataag 322  Q
    |||||||||||||||||||||||||||||||    
T  36236450 ccataaattgttttcagcttattttcataag 36236480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 339
Target Start/End: Original strand, 41293124 - 41293218
Alignment:
Q  246 ttgtgatactgtttgggagagctgatataaacagtttatgacgtgtc-cataaattgttttcagcttattttcataagttctctatgatagctta 339  Q
    |||||| ||| ||||||||| || ||| |||||| ||||||| | || |||||  |||||||||||||| ||||||||| ||| | |||||||||    
T  41293124 ttgtgagactatttgggagaacttataaaaacagcttatgacatttcgcataagctgttttcagcttatattcataagtactccaggatagctta 41293218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 323
Target Start/End: Original strand, 44606107 - 44606149
Alignment:
Q  281 ttatgacgtgtccataaattgttttcagcttattttcataagt 323  Q
    ||||||| ||||||||| |||||||||||| ||||||||||||    
T  44606107 ttatgacatgtccataagttgttttcagctgattttcataagt 44606149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 339
Target Start/End: Complemental strand, 680583 - 680518
Alignment:
Q  274 aaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 339  Q
    |||||| ||||||| |||  ||||| ||||||||||||||||||| |||||||  | |||||||||    
T  680583 aaacagcttatgacatgtttataaactgttttcagcttattttcacaagttcttcaagatagctta 680518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 313
Target Start/End: Complemental strand, 787442 - 787373
Alignment:
Q  244 acttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttat 313  Q
    |||||||| |||||||| |||| || ||  |||||| ||||||| |||||||||  ||||||||||||||    
T  787442 acttgtgacactgtttgtgagaacttatgaaaacagcttatgacatgtccataagctgttttcagcttat 787373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 339
Target Start/End: Complemental strand, 1647316 - 1647251
Alignment:
Q  274 aaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 339  Q
    |||||| ||||||| ||  |||||  |||||||||||||||| |||||| ||||||| ||||||||    
T  1647316 aaacagcttatgacatgctcataagctgttttcagcttatttccataagctctctataatagctta 1647251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 338
Target Start/End: Complemental strand, 3611287 - 3611242
Alignment:
Q  293 cataaattgttttcagcttattttcataagttctctatgatagctt 338  Q
    |||||| |||||| ||||||||||||||||||||| | ||||||||    
T  3611287 cataaactgtttttagcttattttcataagttctccaagatagctt 3611242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 447
Target Start/End: Complemental strand, 4550726 - 4550657
Alignment:
Q  378 cttatacataagcacatatatgataagtgatcatgcaataagtgcttaactaagctgtttacccaaacag 447  Q
    ||||||||||||||| ||| ||||||| ||| |||| ||||||  |||| |||| |||||| ||||||||    
T  4550726 cttatacataagcacttatgtgataagagattatgctataagttgttaattaagttgtttatccaaacag 4550657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 327
Target Start/End: Original strand, 5902602 - 5902655
Alignment:
Q  274 aaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctc 327  Q
    |||||| ||||||||||| |||||| ||||||||||||  ||| ||||||||||    
T  5902602 aaacagcttatgacgtgttcataaactgttttcagcttgattttataagttctc 5902655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 322
Target Start/End: Complemental strand, 12147530 - 12147489
Alignment:
Q  281 ttatgacgtgtccataaattgttttcagcttattttcataag 322  Q
    ||||||| ||| |||||||||||||||| |||||||||||||    
T  12147530 ttatgacatgttcataaattgttttcagtttattttcataag 12147489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 339
Target Start/End: Complemental strand, 33192282 - 33192217
Alignment:
Q  274 aaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 339  Q
    |||||||||||||| | |||||||  |||||||||||||| || ||||| |||| | |||||||||    
T  33192282 aaacagtttatgacatatccataagctgttttcagcttatatttataagctctccaggatagctta 33192217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 327
Target Start/End: Original strand, 42621365 - 42621418
Alignment:
Q  274 aaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctc 327  Q
    ||||||||| |||| ||||  ||| |||||||||||||||||||| ||||||||    
T  42621365 aaacagtttttgacatgtctgtaagttgttttcagcttattttcacaagttctc 42621418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 447
Target Start/End: Original strand, 43635221 - 43635290
Alignment:
Q  378 cttatacataagcacatatatgataagtgatcatgcaataagtgcttaactaagctgtttacccaaacag 447  Q
    |||||||||||||   || |||||||||| | |||| |||||||||||| ||||||||||| | ||||||    
T  43635221 cttatacataagcgattacatgataagtgcttatgctataagtgcttaattaagctgtttatctaaacag 43635290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 293 - 321
Target Start/End: Complemental strand, 15978046 - 15978018
Alignment:
Q  293 cataaattgttttcagcttattttcataa 321  Q
    |||||||||||||||||||||||||||||    
T  15978046 cataaattgttttcagcttattttcataa 15978018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 308 - 352
Target Start/End: Complemental strand, 37474802 - 37474758
Alignment:
Q  308 gcttattttcataagttctctatgatagcttacgcaaacaattta 352  Q
    ||||||| ||||||||||||||||||||||||   ||||||||||    
T  37474802 gcttattatcataagttctctatgatagcttagaaaaacaattta 37474758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 297
Target Start/End: Original strand, 39962268 - 39962312
Alignment:
Q  253 actgtttgggagagctgatataaacagtttatgacgtgtccataa 297  Q
    |||||||||||||||| ||| ||||| |||||||| |||||||||    
T  39962268 actgtttgggagagcttatagaaacaatttatgacatgtccataa 39962312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 279 - 339
Target Start/End: Complemental strand, 44443396 - 44443336
Alignment:
Q  279 gtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 339  Q
    ||||||||  ||| ||||| |||||||||||||||||||||| | |||| | |||||||||    
T  44443396 gtttatgaaatgttcataagttgttttcagcttattttcatatgctctcaaagatagctta 44443336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 59)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 202 - 326
Target Start/End: Original strand, 30815572 - 30815695
Alignment:
Q  202 ctgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattg 301  Q
    |||||||||||| |||||||||  || ||||||  ||| | |||| | |||| ||||||| |||||| |||||||||| ||||||| ||| |||||| ||    
T  30815572 ctgtttggaatggcttatttgaggttatctactagcataagaactagcgatagtgtttgg-agagcttatataaacagcttatgacatgttcataaaatg 30815670  T
Q  302 ttttcagcttattttcataagttct 326  Q
    |||||||||||||||||||||||||    
T  30815671 ttttcagcttattttcataagttct 30815695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 206 - 339
Target Start/End: Original strand, 10199330 - 10199463
Alignment:
Q  206 ttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgtttt 305  Q
    ||||| ||||||||||||  || |||||| |||| |  |||||||| ||| ||||||||| || ||  ||| || ||||||| ||| ||||| |||||||    
T  10199330 ttggattgacttatttgagcttatctactaacataagcacttgtgacactatttgggagaactcatgaaaatagcttatgacatgttcataagttgtttt 10199429  T
Q  306 cagcttattttcataagttctctatgatagctta 339  Q
    ||||||||||||||||| ||||||  ||||||||    
T  10199430 cagcttattttcataagctctctaaaatagctta 10199463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 274 - 339
Target Start/End: Complemental strand, 27140558 - 27140493
Alignment:
Q  274 aaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 339  Q
    |||||| ||||||| ||||||||| ||||||||||||||||| |||||| |||| |||||||||||    
T  27140558 aaacagcttatgacatgtccataagttgttttcagcttatttgcataagctctccatgatagctta 27140493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 281 - 339
Target Start/End: Complemental strand, 3224496 - 3224438
Alignment:
Q  281 ttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 339  Q
    ||||||| ||||||||| ||||| |||||||||||||||||||||||||  ||||||||    
T  3224496 ttatgacatgtccataagttgttctcagcttattttcataagttctctagaatagctta 3224438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 202 - 348
Target Start/End: Original strand, 12564417 - 12564563
Alignment:
Q  202 ctgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattg 301  Q
    ||||||| | ||||||||||||  || | |||||| || |  |||||||  |||||||||||||||| |  || | || |||||||  ||| |||| |||    
T  12564417 ctgtttgaattgacttatttgagcttatatactgatataagcacttgtgtgactgtttgggagagcttacgtatatagcttatgacaagtcaataagttg 12564516  T
Q  302 ttttcagcttattttcataagttctctatgatagcttacgcaaacaa 348  Q
    |||||||||||||| ||||||||||| | ||||||||| | ||||||    
T  12564517 ttttcagcttatttccataagttctccaagatagcttatgaaaacaa 12564563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 217 - 339
Target Start/End: Original strand, 32515374 - 32515496
Alignment:
Q  217 tatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttatttt 316  Q
    ||||||| ||| |||||| |||| |  |||||||| |||||||||||||||| ||  ||||||  |||||| |||| |||| ||||||||| ||||| |     
T  32515374 tatttgagtttatctactaacataagcacttgtgagactgtttgggagagcttatggaaacagcgtatgacatgtcaataagttgttttcaacttatatc 32515473  T
Q  317 cataagttctctatgatagctta 339  Q
     ||||| |||| |||||||||||    
T  32515474 tataagctctccatgatagctta 32515496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 205 - 278
Target Start/End: Complemental strand, 5157221 - 5157148
Alignment:
Q  205 tttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaaca 278  Q
    |||||| ||||||||||||| || ||||| ||||| || |||||||| |||||||||||||||| ||| |||||    
T  5157221 tttggattgacttatttgaacttatctacggacataaacacttgtgaaactgtttgggagagcttatagaaaca 5157148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 202 - 315
Target Start/End: Original strand, 23373231 - 23373343
Alignment:
Q  202 ctgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattg 301  Q
    ||||||| | ||||||||||||| ||||||||||| || |  |||||||| | |||||||||||||| ||| |||||  ||||||| ||||||  |  ||    
T  23373231 ctgtttgaattgacttatttgaacttgtctactgatataagcacttgtgagattgtttgggagagcttatagaaacaacttatgacatgtcca-catctg 23373329  T
Q  302 ttttcagcttattt 315  Q
    ||||||||||||||    
T  23373330 ttttcagcttattt 23373343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 274 - 339
Target Start/End: Original strand, 28689442 - 28689507
Alignment:
Q  274 aaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 339  Q
    |||||| ||||||| ||||||||| |||||||||||||||||||||||| | || | |||||||||    
T  28689442 aaacagcttatgacatgtccataagttgttttcagcttattttcataagctttccaagatagctta 28689507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 275 - 352
Target Start/End: Original strand, 36151496 - 36151573
Alignment:
Q  275 aacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagcttacgcaaacaattta 352  Q
    ||||||||||||| |||||||||  |||||||| |||||||||||||| || ||| ||| | ||||| ||||||||||    
T  36151496 aacagtttatgacatgtccataacctgttttcaacttattttcataagctcactaggattgtttacgaaaacaattta 36151573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 254 - 339
Target Start/End: Original strand, 37941955 - 37942040
Alignment:
Q  254 ctgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 339  Q
    ||||||| ||||||| ||| ||||| |||||||| ||||||||| ||||| || |||||||||| |||| || | |||||||||||    
T  37941955 ctgtttgagagagcttatagaaacaatttatgacatgtccataagttgttctcggcttattttcttaagctcccaatgatagctta 37942040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 293 - 338
Target Start/End: Original strand, 47885042 - 47885087
Alignment:
Q  293 cataaattgttttcagcttattttcataagttctctatgatagctt 338  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||    
T  47885042 cataagttgttttcagcttatttccataagttctctatgatagctt 47885087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 203 - 327
Target Start/End: Complemental strand, 6292643 - 6292520
Alignment:
Q  203 tgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgt 302  Q
    |||||||| ||||||||||||  || ||||||||||| |  |||| ||| | |||||||||||  |  || |||||| ||||||| ||| |||||  |||    
T  6292643 tgtttggattgacttatttgagcttatctactgacataagcacttttgagattgtttgggagaattttta-aaacagcttatgacatgttcataagctgt 6292545  T
Q  303 tttcagcttattttcataagttctc 327  Q
    |||||||||||||||||||| ||||    
T  6292544 tttcagcttattttcataagctctc 6292520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 322
Target Start/End: Original strand, 28935838 - 28935914
Alignment:
Q  246 ttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataag 322  Q
    |||||| |||||||||||||||| ||| |  ||||||||||| ||||||||| || |||| ||||||||| ||||||    
T  28935838 ttgtgagactgtttgggagagcttatagagtcagtttatgacatgtccataagttttttttagcttatttccataag 28935914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 281 - 328
Target Start/End: Original strand, 15687083 - 15687130
Alignment:
Q  281 ttatgacgtgtccataaattgttttcagcttattttcataagttctct 328  Q
    ||||||| |||||||||||||||||||||||||| ||||||| |||||    
T  15687083 ttatgacatgtccataaattgttttcagcttattgtcataagctctct 15687130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 281 - 348
Target Start/End: Complemental strand, 25479654 - 25479587
Alignment:
Q  281 ttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagcttacgcaaacaa 348  Q
    ||||||| ||| ||| | |||||||||||||||||||||||| |||||| ||||||||| | ||||||    
T  25479654 ttatgacatgttcattagttgttttcagcttattttcataagctctctaggatagcttatgaaaacaa 25479587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 348
Target Start/End: Complemental strand, 34952268 - 34952221
Alignment:
Q  301 gttttcagcttattttcataagttctctatgatagcttacgcaaacaa 348  Q
    |||||||||||||||||||||||||||| |||||||||| | ||||||    
T  34952268 gttttcagcttattttcataagttctctttgatagcttatgaaaacaa 34952221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 231 - 322
Target Start/End: Original strand, 38170637 - 38170728
Alignment:
Q  231 tactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataag 322  Q
    ||||| ||| || |||||||| |||| ||||||||||| ||  |||||| ||||||| ||| ||||| ||||||||||||| ||||| ||||    
T  38170637 tactggcatgaacacttgtgagactgcttgggagagcttatgaaaacagcttatgacatgttcataagttgttttcagcttgttttcctaag 38170728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 202 - 289
Target Start/End: Original strand, 44375277 - 44375364
Alignment:
Q  202 ctgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgt 289  Q
    ||||||||| ||||||||||||| || |||||||||||||| |||||  |  |||||||| |||| | ||| |||||| |||||||||    
T  44375277 ctgtttggagtgacttatttgaacttatctactgacattaacacttgcaaacctgtttggaagagtttatagaaacagattatgacgt 44375364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 352
Target Start/End: Original strand, 11639406 - 11639484
Alignment:
Q  274 aaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagcttacgcaaacaattta 352  Q
    |||||| ||||||| |||||||||  |||||| |||||||||||||||| ||||||  ||| |||| ||||||| ||||    
T  11639406 aaacagcttatgacatgtccataagctgtttttagcttattttcataagctctctagaataacttatgcaaacagttta 11639484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 254 - 339
Target Start/End: Complemental strand, 6279499 - 6279414
Alignment:
Q  254 ctgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 339  Q
    ||||||| ||||||| ||  |||||||| |  || ||||||||| ||||||||||| ||||| |||||| |||||| |||||||||    
T  6279499 ctgtttgagagagcttatggaaacagttaaccacatgtccataagttgttttcagcgtatttccataagctctctaggatagctta 6279414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 212 - 321
Target Start/End: Complemental strand, 15579624 - 15579515
Alignment:
Q  212 tgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagctt 311  Q
    ||||||| |||||||| ||||||  ||| | ||||||  | ||||||||||||||||  |  |||||  ||||||| ||||||||| ||||| |||||||    
T  15579624 tgacttaattgaatttatctactagcataagaacttgcaagactgtttgggagagcttgtggaaacaacttatgacatgtccataagttgttctcagctt 15579525  T
Q  312 attttcataa 321  Q
    |||| |||||    
T  15579524 atttccataa 15579515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 278 - 339
Target Start/End: Original strand, 16981930 - 16981991
Alignment:
Q  278 agtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 339  Q
    |||||||||| ||||||||| ||||||| |||||||||  ||||| |||| |||||||||||    
T  16981930 agtttatgacatgtccataagttgtttttagcttatttatataagctctccatgatagctta 16981991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 203 - 296
Target Start/End: Complemental strand, 34536309 - 34536216
Alignment:
Q  203 tgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccata 296  Q
    ||||||||||||||||||||||  | |||| |||||| || |||||||| |||||||| ||  ||| ||  |||||| ||||||| ||||||||    
T  34536309 tgtttggaatgacttatttgaacgtatctattgacataaacacttgtgagactgtttgagatggcttatgaaaacagcttatgacatgtccata 34536216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 327
Target Start/End: Original strand, 41195155 - 41195236
Alignment:
Q  246 ttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctc 327  Q
    |||||||||||||||||||| ||  |||||| || ||||||| | |  ||||  | ||||||||||||||||||||||||||    
T  41195155 ttgtgatactgtttgggagaacttttataaatagcttatgacattttaataagcttttttcagcttattttcataagttctc 41195236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 281 - 341
Target Start/End: Original strand, 3319930 - 3319989
Alignment:
Q  281 ttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagcttacg 341  Q
    ||||||| ||||||||  ||||||||||||||| | |||||| ||||||||||||||||||    
T  3319930 ttatgacatgtccatag-ttgttttcagcttatatccataagatctctatgatagcttacg 3319989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 322
Target Start/End: Complemental strand, 11695941 - 11695893
Alignment:
Q  274 aaacagtttatgacgtgtccataaattgttttcagcttattttcataag 322  Q
    |||||||||||||| |||||||||  |||||||| ||||||||||||||    
T  11695941 aaacagtttatgacatgtccataagctgttttcaacttattttcataag 11695893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 352
Target Start/End: Complemental strand, 17420313 - 17420205
Alignment:
Q  244 acttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagcttacgca 343  Q
    |||||| | ||||||| | |||||| ||  |||||  |||| || ||||||||||||||||||| ||||||| ||| |||| |||  ||||||||||| |    
T  17420313 acttgttagactgttttgaagagcttatgaaaacaacttattacatgtccataaattgttttcaacttatttccattagttttctgagatagcttacgaa 17420214  T
Q  344 aacaattta 352  Q
    |||| ||||    
T  17420213 aacagttta 17420205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 337
Target Start/End: Original strand, 22813615 - 22813663
Alignment:
Q  289 tgtccataaattgttttcagcttattttcataagttctctatgatagct 337  Q
    ||||||||| ||||||| ||||| ||||||||||||||||| |||||||    
T  22813615 tgtccataagttgttttgagctttttttcataagttctctacgatagct 22813663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 338
Target Start/End: Original strand, 30259456 - 30259540
Alignment:
Q  254 ctgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctt 338  Q
    |||||||  |||||| ||| |||||  ||| ||| |||| |||||||||||||| ||||||| |||||| |||| ||||||||||    
T  30259456 ctgtttgaaagagcttatagaaacaacttacgacatgtcaataaattgttttcaacttatttccataagctctccatgatagctt 30259540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 202 - 322
Target Start/End: Original strand, 33723300 - 33723420
Alignment:
Q  202 ctgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattg 301  Q
    ||||||||| ||||||||||||| || ||||||  ||| || |||||||| |||| |||||| | || ||  |||||| | ||||| ||| ||| |  ||    
T  33723300 ctgtttggattgacttatttgaacttatctactaccataaacacttgtgagactgcttgggaaaacttatggaaacagctcatgacatgttcatgagatg 33723399  T
Q  302 ttttcagcttattttcataag 322  Q
    |||||||||||||| ||||||    
T  33723400 ttttcagcttatttccataag 33723420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 293 - 337
Target Start/End: Original strand, 38503474 - 38503518
Alignment:
Q  293 cataaattgttttcagcttattttcataagttctctatgatagct 337  Q
    ||||| ||||||||||||||||||||||||||||| | |||||||    
T  38503474 cataagttgttttcagcttattttcataagttctccaagatagct 38503518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 321
Target Start/End: Original strand, 3597199 - 3597318
Alignment:
Q  202 ctgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattg 301  Q
    ||||||||| ||||||||||||  || |||| ||| || |  |||||||| ||||||||| |||| ||||| ||| |  ||||||| || ||||||  |     
T  3597199 ctgtttggattgacttatttgaggttatctaatgatataaccacttgtgagactgtttggaagagttgataaaaataacttatgacatggccataagcta 3597298  T
Q  302 ttttcagcttattttcataa 321  Q
    |||||||||||||| |||||    
T  3597299 ttttcagcttatttccataa 3597318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 322
Target Start/End: Complemental strand, 4868550 - 4868432
Alignment:
Q  203 tgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgt 302  Q
    |||||||| ||| |||||||||||| |||| ||||||    |||||||| |||||||| ||||| | ||  |||||  ||||||| |||| |||| ||||    
T  4868550 tgtttggattgatttatttgaatttatctattgacataggcacttgtgagactgtttgagagagtttat-gaaacaacttatgacatgtcaataagttgt 4868452  T
Q  303 tttcagcttattttcataag 322  Q
    ||||| ||||||| ||||||    
T  4868451 tttcaacttatttacataag 4868432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 348
Target Start/End: Original strand, 27887115 - 27887182
Alignment:
Q  281 ttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagcttacgcaaacaa 348  Q
    ||||||| ||||||||||||||||| |||||||||| ||| | |||| ||||||| ||| | ||||||    
T  27887115 ttatgacatgtccataaattgtttttagcttatttttatatgctctccatgatagtttatgaaaacaa 27887182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 327
Target Start/End: Original strand, 31517700 - 31517783
Alignment:
Q  244 acttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctc 327  Q
    |||||||| ||||||||||||| || ||  |||||  | ||||| ||| |||||  ||||||||||||||||||||||| ||||    
T  31517700 acttgtgagactgtttgggagaacttatcaaaacaactcatgacatgttcataagctgttttcagcttattttcataagctctc 31517783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 327
Target Start/End: Original strand, 5886991 - 5887037
Alignment:
Q  281 ttatgacgtgtccataaattgttttcagcttattttcataagttctc 327  Q
    ||||||| ||| ||||| ||||||||||||||||||| |||||||||    
T  5886991 ttatgacatgttcataagttgttttcagcttattttcgtaagttctc 5887037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 339
Target Start/End: Original strand, 7137007 - 7137053
Alignment:
Q  293 cataaattgttttcagcttattttcataagttctctatgatagctta 339  Q
    ||||| || |||||||||||||||||||||||||| | |||||||||    
T  7137007 cataagttattttcagcttattttcataagttctccaagatagctta 7137053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 339
Target Start/End: Original strand, 12477284 - 12477342
Alignment:
Q  281 ttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 339  Q
    ||||||| ||||||||| ||||||||||||||||| ||||   |||| |||||||||||    
T  12477284 ttatgacatgtccataagttgttttcagcttatttccatacactctccatgatagctta 12477342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 260
Target Start/End: Original strand, 24460319 - 24460377
Alignment:
Q  202 ctgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttg 260  Q
    ||||||||| ||||||||||||| || ||||||||||| |  |||||||| ||||||||    
T  24460319 ctgtttggattgacttatttgaacttatctactgacatgagcacttgtgagactgtttg 24460377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 339
Target Start/End: Original strand, 28262624 - 28262674
Alignment:
Q  289 tgtccataaattgttttcagcttattttcataagttctctatgatagctta 339  Q
    ||||||||||||||||| ||||||||| |||||||||| || |||| ||||    
T  28262624 tgtccataaattgtttttagcttatttccataagttctataggataactta 28262674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 327
Target Start/End: Original strand, 28482142 - 28482276
Alignment:
Q  193 attatggtactgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtc 292  Q
    ||||||| | ||||| |||||||||||||||| || |||||||||||   ||||||||| | |||| |  |||||| ||| |||||  ||||||  | |     
T  28482142 attatgggaatgtttagaatgacttatttgaacttatctactgacatacgaacttgtgagattgttcgatagagctcatagaaacatcttatgatatatt 28482241  T
Q  293 cataaattgttttcagcttattttcataagttctc 327  Q
    |||||| | |||| ||||||||||| |||| ||||    
T  28482242 cataaactatttttagcttattttcgtaagctctc 28482276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 335
Target Start/End: Complemental strand, 33975635 - 33975589
Alignment:
Q  289 tgtccataaattgttttcagcttattttcataagttctctatgatag 335  Q
    |||||||||| | ||||||||||||||||||||| |||||| |||||    
T  33975635 tgtccataaactattttcagcttattttcataagctctctaggatag 33975589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 339
Target Start/End: Complemental strand, 34290297 - 34290251
Alignment:
Q  293 cataaattgttttcagcttattttcataagttctctatgatagctta 339  Q
    ||||| ||||||||||||||||||||||||||||  | |||||||||    
T  34290297 cataagttgttttcagcttattttcataagttcttcaagatagctta 34290251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 339
Target Start/End: Original strand, 46252679 - 46252737
Alignment:
Q  281 ttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 339  Q
    ||||||| ||| ||||| |||||||||| ||||||||||||| |||| | |||||||||    
T  46252679 ttatgacatgttcataagttgttttcaggttattttcataagctctccaagatagctta 46252737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 348
Target Start/End: Complemental strand, 49888819 - 49888773
Alignment:
Q  302 ttttcagcttattttcataagttctctatgatagcttacgcaaacaa 348  Q
    ||||| |||||||||||||||||||||| ||||||||| | ||||||    
T  49888819 ttttcggcttattttcataagttctctaagatagcttatgaaaacaa 49888773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 327
Target Start/End: Original strand, 4768819 - 4768872
Alignment:
Q  274 aaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctc 327  Q
    |||||| ||| ||| ||||||||| ||||||||||||||||| ||||| |||||    
T  4768819 aaacagcttacgacatgtccataacttgttttcagcttatttccataaattctc 4768872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 321
Target Start/End: Complemental strand, 29723599 - 29723522
Alignment:
Q  244 acttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataa 321  Q
    ||||||||||| |||||  ||| || ||  |||||| ||||||| |||||||||| |||||||| ||||||| |||||    
T  29723599 acttgtgatacagtttgaaagaactaatggaaacagcttatgacatgtccataaactgttttcaacttatttacataa 29723522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 339
Target Start/End: Complemental strand, 37811960 - 37811867
Alignment:
Q  246 ttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 339  Q
    ||||||||||| ||| |||| || ||  |||||| ||||||| ||| |||||| |||||||| ||||||| ||| || |||| ||||| |||||    
T  37811960 ttgtgatactggttgagagaacttatgaaaacagcttatgacatgttcataaactgttttcaacttatttccattagctctccatgatggctta 37811867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 311
Target Start/End: Complemental strand, 38001704 - 38001639
Alignment:
Q  246 ttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagctt 311  Q
    |||||| ||||||||||||| || ||  |||||| ||||||| ||| ||||| |||||||||||||    
T  38001704 ttgtgagactgtttgggagaacttatgaaaacagcttatgacctgttcataagttgttttcagctt 38001639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 326
Target Start/End: Original strand, 38867751 - 38867873
Alignment:
Q  202 ctgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattg 301  Q
    |||||||||  ||| ||||||| | | |||| |||||| || ||||||||  ||||||| ||||||| ||  ||| |  ||||||  ||||||| | |||    
T  38867751 ctgtttggatggacgtatttgagtctatctaatgacataaacacttgtga--ctgtttgagagagcttatggaaataacttatgatatgtccatcagttg 38867848  T
Q  302 ttttcagcttattttcataagttct 326  Q
    |||| ||||||||||||||||||||    
T  38867849 tttttagcttattttcataagttct 38867873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 338
Target Start/End: Complemental strand, 49175692 - 49175635
Alignment:
Q  281 ttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctt 338  Q
    ||||| |||||| || | ||||||||||||||||| ||||||||||  ||||||||||    
T  49175692 ttatgtcgtgtctatcagttgttttcagcttatttccataagttctacatgatagctt 49175635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 322
Target Start/End: Complemental strand, 4549310 - 4549262
Alignment:
Q  274 aaacagtttatgacgtgtccataaattgttttcagcttattttcataag 322  Q
    ||||| |||||||| |||| |||| ||||||||||||||||| ||||||    
T  4549310 aaacaatttatgacatgtctataagttgttttcagcttatttccataag 4549262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #54
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 283 - 347
Target Start/End: Original strand, 6231815 - 6231879
Alignment:
Q  283 atgacgtgtccataaattgttttcagcttattttcataagttctctatgatagcttacgcaaaca 347  Q
    ||||| |||||||||| ||||||||||||||||  |||||||||  | | ||||||||| |||||    
T  6231815 atgacatgtccataaactgttttcagcttatttctataagttcttcaggttagcttacgaaaaca 6231879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #55
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 379 - 439
Target Start/End: Complemental strand, 6659651 - 6659591
Alignment:
Q  379 ttatacataagcacatatatgataagtgatcatgcaataagtgcttaactaagctgtttac 439  Q
    |||||||||||||| |||||||||| || | ||||  ||||||||||| ||| ||||||||    
T  6659651 ttatacataagcacttatatgataattgctgatgccttaagtgcttaattaaactgtttac 6659591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #56
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 322
Target Start/End: Original strand, 7761601 - 7761649
Alignment:
Q  274 aaacagtttatgacgtgtccataaattgttttcagcttattttcataag 322  Q
    ||||| |||||||| ||||||||| || ||||||||||||||| |||||    
T  7761601 aaacaatttatgacatgtccataagtttttttcagcttattttgataag 7761649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #57
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 299 - 339
Target Start/End: Complemental strand, 23402086 - 23402046
Alignment:
Q  299 ttgttttcagcttattttcataagttctctatgatagctta 339  Q
    ||||||||||||||||| |||||| |||| |||||||||||    
T  23402086 ttgttttcagcttatttccataagctctcgatgatagctta 23402046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #58
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 299 - 339
Target Start/End: Original strand, 35590907 - 35590947
Alignment:
Q  299 ttgttttcagcttattttcataagttctctatgatagctta 339  Q
    ||||||||||||||||| |||||| |||| |||||||||||    
T  35590907 ttgttttcagcttatttccataagctctccatgatagctta 35590947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #59
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 279 - 339
Target Start/End: Complemental strand, 43113186 - 43113126
Alignment:
Q  279 gtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 339  Q
    |||| |||| |||| |||||||||||| ||||||| |||||||  |||| |||||||||||    
T  43113186 gtttgtgacatgtctataaattgttttgagcttatgttcataacctctccatgatagctta 43113126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 248 - 352
Target Start/End: Complemental strand, 37273240 - 37273136
Alignment:
Q  248 gtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagcttacgcaaaca 347  Q
    |||| |||||||||||||||| ||  |||||  ||||||| ||||||||| ||||||||| ||||||| ||||||||||| | ||||||||| | |||||    
T  37273240 gtgagactgtttgggagagcttatggaaacaacttatgacatgtccataagttgttttcaacttatttccataagttctccaagatagcttatgaaaaca 37273141  T
Q  348 attta 352  Q
     ||||    
T  37273140 gttta 37273136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 282 - 348
Target Start/End: Original strand, 33883748 - 33883814
Alignment:
Q  282 tatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagcttacgcaaacaa 348  Q
    |||||| ||| ||||| ||||||||||||||||||||||||||||||| ||||||||| | ||||||    
T  33883748 tatgacatgttcataagttgttttcagcttattttcataagttctctaagatagcttatgtaaacaa 33883814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 215 - 336
Target Start/End: Complemental strand, 24624349 - 24624228
Alignment:
Q  215 cttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttatt 314  Q
    |||| ||||| || |||||| ||||||  |||||| | ||||||||| |||||| ||  |||||| ||||||| |||||||||| |||||||||||||||    
T  24624349 cttagttgaacttatctactcacattagcacttgtaagactgtttggaagagcttatgaaaacagcttatgacatgtccataaactgttttcagcttatt 24624250  T
Q  315 ttcataagttctctatgatagc 336  Q
      |||||| | |||| ||||||    
T  24624249 aacataagatttctaggatagc 24624228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 216 - 347
Target Start/End: Complemental strand, 31010540 - 31010409
Alignment:
Q  216 ttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattt 315  Q
    ||||||||| ||  ||||| |||| | |||||||||   |||||| || |||| ||| |||||  ||||||| |||||||||  ||||||||||||| ||    
T  31010540 ttatttgaacttaactactaacataagaacttgtgagtgtgtttgtgaaagcttatagaaacaacttatgacatgtccataagctgttttcagcttaatt 31010441  T
Q  316 tcataagttctctatgatagcttacgcaaaca 347  Q
     |||||| |||||||||||| ||||| |||||    
T  31010440 ccataagctctctatgataggttacgaaaaca 31010409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 276 - 339
Target Start/End: Original strand, 39602202 - 39602265
Alignment:
Q  276 acagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 339  Q
    |||| ||||||| ||| ||||||||||||||| ||||||||||||||||||| | |||||||||    
T  39602202 acagcttatgacatgttcataaattgttttcaacttattttcataagttctcaaagatagctta 39602265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 274 - 339
Target Start/End: Original strand, 1217790 - 1217855
Alignment:
Q  274 aaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 339  Q
    |||||| ||||||| ||||||||| ||||||||| |||| |||||||||||||| | |||||||||    
T  1217790 aaacagcttatgacatgtccataagttgttttcatcttactttcataagttctcaaggatagctta 1217855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 244 - 321
Target Start/End: Original strand, 32103477 - 32103554
Alignment:
Q  244 acttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataa 321  Q
    |||||||||||||||| || || ||  || ||| |||||||||| |||||||| |||||||||||||||| |||||||    
T  32103477 acttgtgatactgtttaggcgatcttttagaaaaagtttatgacatgtccatatattgttttcagcttatattcataa 32103554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 289 - 352
Target Start/End: Complemental strand, 2719533 - 2719470
Alignment:
Q  289 tgtccataaattgttttcagcttattttcataagttctctatgatagcttacgcaaacaattta 352  Q
    ||||||||| ||||| ||||||||||||||||||||||| | ||||||||| | ||||| ||||    
T  2719533 tgtccataagttgttctcagcttattttcataagttctccaagatagcttatgaaaacagttta 2719470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 244 - 335
Target Start/End: Complemental strand, 43115166 - 43115075
Alignment:
Q  244 acttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatag 335  Q
    |||||||| | ||||||| |||| | ||  |||||  ||||||| ||||||||| ||||||||||||||||| |||||| |||| |||||||    
T  43115166 acttgtgagattgtttggaagagtttatggaaacaacttatgacatgtccataacttgttttcagcttatttccataagctctcaatgatag 43115075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 302 - 339
Target Start/End: Complemental strand, 25075118 - 25075081
Alignment:
Q  302 ttttcagcttattttcataagttctctatgatagctta 339  Q
    |||||||||||||||||| |||||||||||||||||||    
T  25075118 ttttcagcttattttcattagttctctatgatagctta 25075081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 290 - 339
Target Start/End: Original strand, 34924544 - 34924593
Alignment:
Q  290 gtccataaattgttttcagcttattttcataagttctctatgatagctta 339  Q
    |||||||  |||||||||||||||||||||||| |||||| |||||||||    
T  34924544 gtccatatgttgttttcagcttattttcataagctctctaagatagctta 34924593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 253 - 334
Target Start/End: Original strand, 51206467 - 51206548
Alignment:
Q  253 actgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgata 334  Q
    |||||| ||||||||  ||  |||||| ||||||| | |||| || |||||||||||||||||||||||| |||| ||||||    
T  51206467 actgttagggagagcatatggaaacagcttatgacctatccaaaagttgttttcagcttattttcataagctctcaatgata 51206548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 300 - 348
Target Start/End: Complemental strand, 21367721 - 21367673
Alignment:
Q  300 tgttttcagcttattttcataagttctctatgatagcttacgcaaacaa 348  Q
    |||||||||||||||||||||||||||| | ||||||||| | ||||||    
T  21367721 tgttttcagcttattttcataagttctccaagatagcttatgaaaacaa 21367673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 338
Target Start/End: Complemental strand, 23785335 - 23785271
Alignment:
Q  274 aaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctt 338  Q
    |||||| ||||| ||||||||||| ||||||||||||| ||| |||||| |||| |||| |||||    
T  23785335 aaacagcttatggcgtgtccataagttgttttcagcttgtttccataagctctccatgagagctt 23785271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 283 - 327
Target Start/End: Complemental strand, 41633431 - 41633387
Alignment:
Q  283 atgacgtgtccataaattgttttcagcttattttcataagttctc 327  Q
    ||||| |||| ||||||||||||||||||||||||||||| ||||    
T  41633431 atgacatgtctataaattgttttcagcttattttcataagctctc 41633387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 339
Target Start/End: Complemental strand, 51130849 - 51130765
Alignment:
Q  255 tgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 339  Q
    |||||||||||||| ||  ||||  | |||||| ||||||||| ||| ||||||||||||||||  || |||| |||||||||||    
T  51130849 tgtttgggagagcttatgaaaaccatgtatgacatgtccataagttgctttcagcttattttcaatagctctccatgatagctta 51130765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 452
Target Start/End: Complemental strand, 29094331 - 29094256
Alignment:
Q  377 gcttatacataagcacatatatgataagtgatcatgcaataagtgcttaactaagctgtttacccaaacagggcct 452  Q
    |||||||||||| ||| ||||||||||||| | |||| ||||| | |||| ||||||||||||  ||| |||||||    
T  29094331 gcttatacataaacacttatatgataagtgtttatgctataagcgtttaattaagctgtttactgaaatagggcct 29094256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 44488936 - 44488898
Alignment:
Q  301 gttttcagcttattttcataagttctctatgatagctta 339  Q
    ||||||||||||||| ||||||||||||| |||||||||    
T  44488936 gttttcagcttatttccataagttctctaagatagctta 44488898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 327
Target Start/End: Original strand, 50946295 - 50946329
Alignment:
Q  293 cataaattgttttcagcttattttcataagttctc 327  Q
    ||||||||||| |||||||||||||||||||||||    
T  50946295 cataaattgttctcagcttattttcataagttctc 50946329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 339
Target Start/End: Complemental strand, 6483873 - 6483816
Alignment:
Q  282 tatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 339  Q
    |||||| || ||| ||| ||||||||||||||||| ||||| |||||| |||||||||    
T  6483873 tatgacatggccacaaactgttttcagcttattttaataagctctctaggatagctta 6483816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 321
Target Start/End: Original strand, 11040542 - 11040651
Alignment:
Q  212 tgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagctt 311  Q
    |||||||| |||  || |||||| |||| || |||| | |||||| ||| ||||||  ||  ||||||  |||||| ||||||||| |||||||| ||||    
T  11040542 tgacttatatgagcttatctactcacataaacacttctaatactgattgagagagcatatgaaaacagagtatgacatgtccataagttgttttcggctt 11040641  T
Q  312 attttcataa 321  Q
    ||||||||||    
T  11040642 attttcataa 11040651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 339
Target Start/End: Original strand, 28795871 - 28795908
Alignment:
Q  302 ttttcagcttattttcataagttctctatgatagctta 339  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  28795871 ttttcagcttattttcataagttctctaatatagctta 28795908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 339
Target Start/End: Original strand, 53789479 - 53789516
Alignment:
Q  302 ttttcagcttattttcataagttctctatgatagctta 339  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  53789479 ttttcagcttaatttcataagttctccatgatagctta 53789516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 246 - 322
Target Start/End: Original strand, 11039301 - 11039377
Alignment:
Q  246 ttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataag 322  Q
    |||||| ||||||||  |||||| ||  |||||  ||||||| ||||||||| ||||||||||||||| | ||||||    
T  11039301 ttgtgagactgtttgaaagagcttatggaaacatattatgacatgtccataagttgttttcagcttatctccataag 11039377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 246 - 322
Target Start/End: Original strand, 20194995 - 20195070
Alignment:
Q  246 ttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataag 322  Q
    |||||| |||||||| ||||||| ||  |||||||||||||| | | || || ||||||||||||| ||||||||||    
T  20194995 ttgtgagactgtttgtgagagcttatgaaaacagtttatgacatattcaaaagttgttttcagctt-ttttcataag 20195070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 203 - 315
Target Start/End: Original strand, 20210847 - 20210959
Alignment:
Q  203 tgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgt 302  Q
    |||||||| ||| ||||||||  || ||||||||||| |  |||||||| |||||||| |||| || ||  |||| | ||||||  |||| || | ||||    
T  20210847 tgtttggattgatttatttgaggttatctactgacataaccacttgtgagactgtttgagagatcttatgcaaacggattatgatatgtctatgagttgt 20210946  T
Q  303 tttcagcttattt 315  Q
    |||||||||||||    
T  20210947 tttcagcttattt 20210959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 340
Target Start/End: Original strand, 24085354 - 24085394
Alignment:
Q  300 tgttttcagcttattttcataagttctctatgatagcttac 340  Q
    ||||||||||||||||||| |||||||| | ||||||||||    
T  24085354 tgttttcagcttattttcacaagttctccaagatagcttac 24085394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 316
Target Start/End: Complemental strand, 41724350 - 41724250
Alignment:
Q  216 ttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattt 315  Q
    ||||||||| || ||||||||||| |  |||||| | || ||||| || | || ||  |||||  ||||||| ||||||||| |||||||||||||||||    
T  41724350 ttatttgaacttatctactgacataagtacttgtcagacagtttgtgaaaacttatggaaacaacttatgacatgtccataagttgttttcagcttattt 41724251  T
Q  316 t 316  Q
    |    
T  41724250 t 41724250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 254 - 347
Target Start/End: Original strand, 42817192 - 42817287
Alignment:
Q  254 ctgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagct--tattttcataagttctctatgatagcttacgcaaaca 347  Q
    ||||||| ||||||| ||  ||||||  |||||| ||||||||| ||||||||||||  |||| ||||||  |||||  ||||||||||| |||||    
T  42817192 ctgtttgagagagcttatggaaacagcatatgacatgtccataagttgttttcagcttatattctcataaactctcttagatagcttacgaaaaca 42817287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 202 - 349
Target Start/End: Original strand, 28691754 - 28691900
Alignment:
Q  202 ctgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattg 301  Q
    ||||||||| |||||||||||| ||| ||| || |||| |  | |||||| |||||| || ||| || ||  |||||| ||||||| |||||||||||||    
T  28691754 ctgtttggattgacttatttgagtttatctgctaacataagcatttgtgagactgttcgg-agatcttatgaaaacagcttatgacttgtccataaattg 28691852  T
Q  302 ttttcagcttattttcataagttctctatgatagcttacgcaaacaat 349  Q
    || |||| ||||||||||||| |||| | ||||||||| | |||||||    
T  28691853 ttatcagtttattttcataagatctccaggatagcttatgaaaacaat 28691900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 203 - 307
Target Start/End: Complemental strand, 30751670 - 30751566
Alignment:
Q  203 tgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgt 302  Q
    |||||||| | |||||||| || || ||||||||||| |  |||||||  |||||||||||||||| ||| |||||||||||  | |||||||||| |||    
T  30751670 tgtttggattaacttatttaaacttatctactgacataagcacttgtgcgactgtttgggagagcttatagaaacagtttatagcatgtccataaactgt 30751571  T
Q  303 tttca 307  Q
    |||||    
T  30751570 tttca 30751566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 244 - 322
Target Start/End: Complemental strand, 39345581 - 39345503
Alignment:
Q  244 acttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataag 322  Q
    |||||||| ||||||||| |||| | ||  |||||||||||||| ||||||||| ||| ||||||||||||| ||||||    
T  39345581 acttgtgagactgtttggtagagttcatggaaacagtttatgacatgtccataagttgctttcagcttatttccataag 39345503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 327
Target Start/End: Original strand, 48157082 - 48157163
Alignment:
Q  246 ttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctc 327  Q
    |||||| |||||||||||||||| ||| |||||  ||||| | |||||||||  |||||||||||||||| |||||| ||||    
T  48157082 ttgtgagactgtttgggagagcttatagaaacaacttatgccatgtccataagctgttttcagcttatttccataagatctc 48157163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 244 - 315
Target Start/End: Complemental strand, 33894737 - 33894666
Alignment:
Q  244 acttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattt 315  Q
    |||||||| |||||||| ||||||| ||  ||||||  |||||| ||||||||| |||||||||||||||||    
T  33894737 acttgtgagactgtttgtgagagcttatgaaaacagcatatgacatgtccataagttgttttcagcttattt 33894666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 352
Target Start/End: Complemental strand, 9038191 - 9038114
Alignment:
Q  274 aaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagcttacgcaaacaattta 352  Q
    |||||| ||||||| ||| ||||| |||||||||||||||||||| |||||||| ||||||| ||| | ||||| ||||    
T  9038191 aaacagcttatgacatgttcataa-ttgttttcagcttattttcacaagttctccatgatagtttatgaaaacagttta 9038114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 293 - 355
Target Start/End: Complemental strand, 34035978 - 34035916
Alignment:
Q  293 cataaattgttttcagcttattttcataagttctctatgatagcttacgcaaacaatttaact 355  Q
    ||||| ||||||||| |||||||||  |||||||||| ||||||||| | |||||||||||||    
T  34035978 cataagttgttttcaacttattttcgcaagttctctaagatagcttatgaaaacaatttaact 34035916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 339
Target Start/End: Original strand, 40530414 - 40530464
Alignment:
Q  289 tgtccataaattgttttcagcttattttcataagttctctatgatagctta 339  Q
    |||| |||||||||||||| |||||||||||||||||| || |||||||||    
T  40530414 tgtctataaattgttttcaacttattttcataagttctttaggatagctta 40530464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 447
Target Start/End: Complemental strand, 49060490 - 49060420
Alignment:
Q  377 gcttatacataagcacatatatgataagtgatcatgcaataagtgcttaactaagctgtttacccaaacag 447  Q
    ||||||||||||  || |||||||||||  || || | |||||||||||| ||||||||||||||||||||    
T  49060490 gcttatacataaatacttatatgataagccattatactataagtgcttaattaagctgtttacccaaacag 49060420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 296 - 349
Target Start/End: Original strand, 33552862 - 33552915
Alignment:
Q  296 aaattgttttcagcttattttcataagttctctatgatagcttacgcaaacaat 349  Q
    ||||||||||  |||||||||||||||||||||| ||||||||| | |||||||    
T  33552862 aaattgttttatgcttattttcataagttctctaagatagcttatgaaaacaat 33552915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 327
Target Start/End: Complemental strand, 7244771 - 7244707
Alignment:
Q  263 agagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctc 327  Q
    |||||||||  ||||| |||||||| ||  ||||| |||||||||||||||||||||||| ||||    
T  7244771 agagctgatggaaacaatttatgacatgctcataagttgttttcagcttattttcataagctctc 7244707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 329
Target Start/End: Original strand, 12234810 - 12234934
Alignment:
Q  205 tttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttt 304  Q
    |||||| ||||||| ||||  || ||||||| |||||  || ||||| |||| |||| | |||| ||| |||||  ||||||| |||| ||||  |||||    
T  12234810 tttggattgacttagttgagcttatctactggcattagcacgtgtgagactgcttggaatagcttatagaaacaacttatgacatgtctataagctgttt 12234909  T
Q  305 tcagcttattttcataagttctcta 329  Q
    ||||||||||| |||||| ||||||    
T  12234910 tcagcttatttccataagctctcta 12234934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 452
Target Start/End: Complemental strand, 31341144 - 31341069
Alignment:
Q  377 gcttatacataagcacatatatgataagtgatcatgcaataagtgcttaactaagctgtttacccaaacagggcct 452  Q
    |||||||||||||||  || |||||||| | | |||||||||| |||| | |||| |||||| |||||||||||||    
T  31341144 gcttatacataagcatttagatgataagcgcttatgcaataagcgcttgattaagttgtttatccaaacagggcct 31341069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 42281486 - 42281569
Alignment:
Q  256 gtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 339  Q
    |||| |||||||| ||| |||||| ||||||| |||  |||| |||||||||||||||||  ||||| ||||  ||||||||||    
T  42281486 gtttaggagagcttatagaaacagcttatgacatgtaaataatttgttttcagcttatttctataagctctcagtgatagctta 42281569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 339
Target Start/End: Original strand, 27626084 - 27626178
Alignment:
Q  245 cttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 339  Q
    ||||||| | |||||| || |||| ||  |||||| ||||||| |||||||||| |||||| | ||||||| |||||| |||  |||||||||||    
T  27626084 cttgtgagattgtttgagaaagcttatggaaacagcttatgacatgtccataaactgttttaaacttatttccataagctcttcatgatagctta 27626178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 339
Target Start/End: Complemental strand, 39281034 - 39280984
Alignment:
Q  289 tgtccataaattgttttcagcttattttcataagttctctatgatagctta 339  Q
    ||||||||| ||||||||||||||||| |||| |||||| | |||||||||    
T  39281034 tgtccataagttgttttcagcttatttccatatgttctccaagatagctta 39280984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 327
Target Start/End: Complemental strand, 46082109 - 46082063
Alignment:
Q  281 ttatgacgtgtccataaattgttttcagcttattttcataagttctc 327  Q
    ||||||| || |||||| |||||||||||||||||||||||| ||||    
T  46082109 ttatgacatgaccataagttgttttcagcttattttcataagctctc 46082063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 338
Target Start/End: Original strand, 2825240 - 2825285
Alignment:
Q  293 cataaattgttttcagcttattttcataagttctctatgatagctt 338  Q
    ||||| || |||||||||||||| ||||||||||||| ||||||||    
T  2825240 cataagttattttcagcttatttccataagttctctaggatagctt 2825285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 339
Target Start/End: Original strand, 5628557 - 5628621
Alignment:
Q  274 aaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 339  Q
    |||||||||||||| |||| ||||  ||||| ||||||||||||||||| ||||| ||||| ||||    
T  5628557 aaacagtttatgacatgtctataagctgttt-cagcttattttcataagctctctgtgatatctta 5628621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 339
Target Start/End: Complemental strand, 30535715 - 30535578
Alignment:
Q  202 ctgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattg 301  Q
    ||||||| | |||||||||||| ||  | ||||||||| || ||||| || ||||||| ||||| || ||  |||||  ||||||  ||| | |||  ||    
T  30535715 ctgtttgaattgacttatttgagttaatttactgacataaacacttgagagactgttttggagaacttatgaaaacaacttatgatatgttcgtaagctg 30535616  T
Q  302 ttttcagcttattttcataagttctctatgatagctta 339  Q
    ||||||| ||||||||||| ||||| || |||||||||    
T  30535615 ttttcaggttattttcatatgttctataagatagctta 30535578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 37064230 - 37064275
Alignment:
Q  294 ataaattgttttcagcttattttcataagttctctatgatagctta 339  Q
    |||| ||||||| || ||||||||||||| ||||||||||||||||    
T  37064230 ataagttgttttaagtttattttcataagctctctatgatagctta 37064275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 347
Target Start/End: Original strand, 37064482 - 37064527
Alignment:
Q  302 ttttcagcttattttcataagttctctatgatagcttacgcaaaca 347  Q
    |||||||||||||||||||||| |||||  |||||||||| |||||    
T  37064482 ttttcagcttattttcataagtcctctaaaatagcttacgaaaaca 37064527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 322
Target Start/End: Complemental strand, 44808231 - 44808190
Alignment:
Q  281 ttatgacgtgtccataaattgttttcagcttattttcataag 322  Q
    ||||||| |||||||||  |||||||||||||||||||||||    
T  44808231 ttatgacatgtccataacctgttttcagcttattttcataag 44808190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 322
Target Start/End: Original strand, 47134754 - 47134795
Alignment:
Q  281 ttatgacgtgtccataaattgttttcagcttattttcataag 322  Q
    |||||||  |||||||| ||||||||||||||||||||||||    
T  47134754 ttatgacacgtccataagttgttttcagcttattttcataag 47134795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 348
Target Start/End: Original strand, 3610700 - 3610804
Alignment:
Q  244 acttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagcttacgca 343  Q
    |||||||||||| ||||||| | || ||  |||||| | ||||| |||||||||    ||||||||||||||  ||||| |||||| ||||| ||||| |    
T  3610700 acttgtgatactttttgggaaaccttatggaaacagctaatgacatgtccataagcctttttcagcttatttctataagctctctaggatagtttacgaa 3610799  T
Q  344 aacaa 348  Q
    |||||    
T  3610800 aacaa 3610804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 314
Target Start/End: Original strand, 12834952 - 12834992
Alignment:
Q  274 aaacagtttatgacgtgtccataaattgttttcagcttatt 314  Q
    |||||| ||||||| |||||||||| |||||||||||||||    
T  12834952 aaacagcttatgacatgtccataaactgttttcagcttatt 12834992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 203 - 327
Target Start/End: Original strand, 22387815 - 22387939
Alignment:
Q  203 tgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgt 302  Q
    |||||||| ||||||| | ||| || | ||||||||| || || ||||| |||||||||||||||| ||  |||||  ||||| | |||  ||||| |||    
T  22387815 tgtttggattgacttactagaacttatttactgacataaacacgtgtgagactgtttgggagagcttatgaaaacaacttatggcatgtttataaactgt 22387914  T
Q  303 tttcagcttattttcataagttctc 327  Q
    ||| | ||||||| |||||| ||||    
T  22387915 ttttaacttatttccataagctctc 22387939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 348
Target Start/End: Original strand, 24363601 - 24363665
Alignment:
Q  284 tgacgtgtccataaattgttttcagcttattttcataagttctctatgatagcttacgcaaacaa 348  Q
    |||| ||||||||| ||||||||||||||||| |||||  |||| | ||||||||| | ||||||    
T  24363601 tgacatgtccataagttgttttcagcttatttccataacctctccaggatagcttatgaaaacaa 24363665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 352
Target Start/End: Complemental strand, 39907857 - 39907805
Alignment:
Q  300 tgttttcagcttattttcataagttctctatgatagcttacgcaaacaattta 352  Q
    |||||||||||||||||||| ||||||||| ||||| ||| | ||||| ||||    
T  39907857 tgttttcagcttattttcattagttctctaagatagtttatgaaaacagttta 39907805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 212 - 322
Target Start/End: Complemental strand, 6950464 - 6950354
Alignment:
Q  212 tgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagctt 311  Q
    |||||||||||| ||| ||||||| ||| || | |||||| | |||||||||||||| || ||||||   |||||| |||| |||| |||||||||||||    
T  6950464 tgacttatttgagtttatctactggcataaacatttgtgagattgtttgggagagcttatgtaaacaacctatgacatgtcgataagttgttttcagctt 6950365  T
Q  312 attttcataag 322  Q
    |||| ||||||    
T  6950364 atttccataag 6950354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 255 - 339
Target Start/End: Original strand, 9540967 - 9541051
Alignment:
Q  255 tgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 339  Q
    |||||||||||||| ||  |||||  ||||||| ||||||||| |||| ||||||||||||||| ||| |||||| |||||||||    
T  9540967 tgtttgggagagcttatggaaacatcttatgacatgtccataatttgtgttcagcttattttcaaaagctctctaggatagctta 9541051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 244 - 339
Target Start/End: Original strand, 11569417 - 11569512
Alignment:
Q  244 acttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 339  Q
    |||||||| |||||||  ||||||| ||  |||||| ||||||| ||| ||||| |||||||||||||||||||| ||  |||| |||||||||||    
T  11569417 acttgtgagactgtttaagagagcttatggaaacagcttatgacatgtacataagttgttttcagcttattttcaaaatctctccatgatagctta 11569512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 373 - 453
Target Start/End: Complemental strand, 11415108 - 11415028
Alignment:
Q  373 aatggcttatacataagcacatatatgataagtgatcatgcaataagtgcttaactaagctgtttacccaaacagggcctg 453  Q
    |||||||||||||| | ||| ||||||||||||||| |||| ||||| |||| | |||| || ||| ||||||||||||||    
T  11415108 aatggcttatacatgaacacttatatgataagtgattatgctataagcgcttgaataagttggttatccaaacagggcctg 11415028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 339
Target Start/End: Complemental strand, 30389170 - 30389114
Alignment:
Q  283 atgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 339  Q
    ||||| ||| ||||| ||||||||||||||||||||||||||||||| || ||||||    
T  30389170 atgacatgttcataagttgttttcagcttattttcataagttctctaggaaagctta 30389114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 300 - 347
Target Start/End: Original strand, 14247240 - 14247287
Alignment:
Q  300 tgttttcagcttattttcataagttctctatgatagcttacgcaaaca 347  Q
    |||||||||||||||||||||||||||||| |||| |||||| |||||    
T  14247240 tgttttcagcttattttcataagttctctacgatatcttacgaaaaca 14247287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 339
Target Start/End: Original strand, 4055585 - 4055671
Alignment:
Q  253 actgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 339  Q
    |||||||||||||| | ||| ||| |  ||||||| |||||||||| |||||||||||||||| | |||| |||||  |||||||||    
T  4055585 actgtttgggagagtttatagaaataacttatgacatgtccataaactgttttcagcttatttccttaagctctctgagatagctta 4055671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 202 - 328
Target Start/End: Complemental strand, 9700153 - 9700027
Alignment:
Q  202 ctgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattg 301  Q
    ||||||||| | ||||||||||  || ||||||  ||| || |||||||| ||| |||| |||||||  |  || || |||||||| |||||||||  ||    
T  9700153 ctgtttggattaacttatttgagcttatctactagcataaacacttgtgagactatttgagagagcttgtgaaatcaatttatgacatgtccataagctg 9700054  T
Q  302 ttttcagcttattttcataagttctct 328  Q
    |||||| |||||||||||||| |||||    
T  9700053 ttttcaccttattttcataagctctct 9700027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 274 - 339
Target Start/End: Original strand, 2364483 - 2364548
Alignment:
Q  274 aaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 339  Q
    |||||||||||||| |||||||||| |||||||||||| |||  | ||| |||||| |||||||||    
T  2364483 aaacagtttatgacatgtccataaagtgttttcagcttttttcgacaagctctctaagatagctta 2364548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 274 - 339
Target Start/End: Complemental strand, 8062409 - 8062344
Alignment:
Q  274 aaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 339  Q
    ||||||||||  ||||||||||||  |||||||||||||||| |||||  |||||| |||||||||    
T  8062409 aaacagtttacaacgtgtccataagatgttttcagcttatttccataatctctctaagatagctta 8062344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 248 - 336
Target Start/End: Original strand, 42215270 - 42215358
Alignment:
Q  248 gtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagc 336  Q
    |||| ||||||||||||| || ||  |||||| ||||||| ||| |||||  |||||||||||||||| |||||| |||| | ||||||    
T  42215270 gtgacactgtttgggagaactaatgaaaacagcttatgacttgttcataagctgttttcagcttatttacataagctctccaggatagc 42215358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 336
Target Start/End: Original strand, 25869263 - 25869318
Alignment:
Q  281 ttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagc 336  Q
    ||||||| ||||||||| ||||||||||||||||| |||||  |||| ||||||||    
T  25869263 ttatgacatgtccataagttgttttcagcttatttccataaactctccatgatagc 25869318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 327
Target Start/End: Complemental strand, 44401670 - 44401588
Alignment:
Q  244 acttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctc 327  Q
    |||||||| ||||||||||| || | ||| |||||  ||| ||| ||| |||| |||||||||||||||||| |||||||||||    
T  44401670 acttgtgagactgtttgggatagtttatagaaacaactta-gacatgttcatacattgttttcagcttatttccataagttctc 44401588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 327
Target Start/End: Original strand, 3536954 - 3536988
Alignment:
Q  293 cataaattgttttcagcttattttcataagttctc 327  Q
    ||||||||||||||||||||||| |||||||||||    
T  3536954 cataaattgttttcagcttatttccataagttctc 3536988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 339
Target Start/End: Complemental strand, 11795165 - 11795107
Alignment:
Q  281 ttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 339  Q
    ||||||| |||||||||  |||||||||||||||| |||||| |||| || ||||||||    
T  11795165 ttatgacatgtccataacctgttttcagcttatttccataagctctccataatagctta 11795107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 339
Target Start/End: Complemental strand, 20672823 - 20672765
Alignment:
Q  281 ttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 339  Q
    ||||||| ||| |||||  ||||||||||||||||||||||| |||| | |||||||||    
T  20672823 ttatgacatgttcataagctgttttcagcttattttcataagctctccaggatagctta 20672765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 337
Target Start/End: Complemental strand, 24326141 - 24326050
Alignment:
Q  244 acttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagct 337  Q
    |||||||| |||||||||||||||| ||  |||||||||||||  | | ||||| |||||||| ||||||||   ||||||||| | |||||||    
T  24326141 acttgtgagactgtttgggagagcttatggaaacagtttatga--tatacataagttgttttccgcttatttctttaagttctcaacgatagct 24326050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 321
Target Start/End: Original strand, 30191072 - 30191178
Alignment:
Q  215 cttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttatt 314  Q
    ||||||||| ||| |||| || ||| |  |||||| | |||||||||||||||| ||  |||||  ||||||| ||| || || ||||||||||||||||    
T  30191072 cttatttgagtttatctattggcataagcacttgttagactgtttgggagagcttatggaaacaacttatgacatgttcaaaacttgttttcagcttatt 30191171  T
Q  315 ttcataa 321  Q
    | |||||    
T  30191172 tccataa 30191178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 330
Target Start/End: Original strand, 44033556 - 44033595
Alignment:
Q  289 tgtccataaattgttttcagcttattttcataagttctctat 330  Q
    |||||||||||||||  |||||||||||||||||||||||||    
T  44033556 tgtccataaattgtt--cagcttattttcataagttctctat 44033595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 322
Target Start/End: Original strand, 3600735 - 3600776
Alignment:
Q  281 ttatgacgtgtccataaattgttttcagcttattttcataag 322  Q
    ||||||| ||||||||| ||||||||| ||||||||||||||    
T  3600735 ttatgacatgtccataagttgttttcaacttattttcataag 3600776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 266
Target Start/End: Original strand, 8535976 - 8536037
Alignment:
Q  205 tttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagag 266  Q
    |||||| || || |||||||||| ||||||||||| |  |||||||| ||||||||||||||    
T  8535976 tttggattggctaatttgaatttatctactgacataagtacttgtgagactgtttgggagag 8536037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 322
Target Start/End: Original strand, 14339602 - 14339643
Alignment:
Q  281 ttatgacgtgtccataaattgttttcagcttattttcataag 322  Q
    ||||||| ||||||||| ||||||||| ||||||||||||||    
T  14339602 ttatgacatgtccataagttgttttcaacttattttcataag 14339643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 281 - 329
Target Start/End: Original strand, 2594994 - 2595042
Alignment:
Q  281 ttatgacgtgtccataaattgttttcagcttattttcataagttctcta 329  Q
    ||||||| ||| ||||| |||||||||||||||| ||||||||| ||||    
T  2594994 ttatgacatgttcataagttgttttcagcttattctcataagttgtcta 2595042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 313
Target Start/End: Original strand, 7878496 - 7878555
Alignment:
Q  253 actgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttat 313  Q
    |||||||||||||||| ||| || ||| ||||||| |||| ||||| ||||||||||||||    
T  7878496 actgtttgggagagcttatagaa-cagcttatgacatgtctataaactgttttcagcttat 7878555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 202 - 351
Target Start/End: Complemental strand, 12851330 - 12851179
Alignment:
Q  202 ctgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgata--ctgtttgggagagctgatataaacagtttatgacgtgtccataaat 299  Q
    ||||||||| || ||||| |||| ||  ||| || ||| || ||||||||||  |||||||||| | || ||  |||||| |||| || ||| |||||      
T  12851330 ctgtttggattggcttatctgaacttacctattggcataaacacttgtgatagactgtttgggaaaacttatgaaaacagcttataacatgttcataaga 12851231  T
Q  300 tgttttcagcttattttcataagttctctatgatagcttacgcaaacaattt 351  Q
    ||||||| ||||||||||||||| |||| | || |||||| | |||||||||    
T  12851230 tgttttcggcttattttcataagctctcaaggaaagcttatgaaaacaattt 12851179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 437
Target Start/End: Complemental strand, 12972806 - 12972746
Alignment:
Q  377 gcttatacataagcacatatatgataagtgatcatgcaataagtgcttaactaagctgttt 437  Q
    |||||||||||||||| |||||||||| || | |||| ||||| |||||| |||| |||||    
T  12972806 gcttatacataagcacttatatgataaatgcttatgctataagcgcttaattaagttgttt 12972746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 246 - 337
Target Start/End: Original strand, 29168018 - 29168110
Alignment:
Q  246 ttgtgatactgtttgggagagctgatataaacagtttatgac-gtgtccataaattgttttcagcttattttcataagttctctatgatagct 337  Q
    |||||| ||||||||||||| || ||| |||||| |||||||  | | |||||||  || ||||||||||| ||||||||||| | |||||||    
T  29168018 ttgtgagactgtttgggagaacttataaaaacagattatgacatttttcataaatgtttctcagcttatttccataagttctccaagatagct 29168110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 334
Target Start/End: Original strand, 41606893 - 41606953
Alignment:
Q  274 aaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgata 334  Q
    |||||| ||||||| ||| || || ||||||||||||||||| |||||| |||||| ||||    
T  41606893 aaacagcttatgacatgttcaaaagttgttttcagcttatttccataagctctctaggata 41606953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 202 - 318
Target Start/End: Original strand, 41620210 - 41620325
Alignment:
Q  202 ctgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattg 301  Q
    ||||||||| ||| ||||||||| ||  |||||||||| || || |||||  ||||| |||| || | ||  |||||  ||||||| ||||||||| |||    
T  41620210 ctgtttgga-tgatttatttgaacttacctactgacatgaacacctgtgaggctgttagggaaagtttatggaaacaaattatgacatgtccataagttg 41620308  T
Q  302 ttttcagcttattttca 318  Q
    ||||| |||||||||||    
T  41620309 ttttccgcttattttca 41620325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 229 - 339
Target Start/End: Complemental strand, 34939869 - 34939759
Alignment:
Q  229 tctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctct 328  Q
    |||| |||||| || | |||||| ||||||| |||||||| |   |||||| ||||||| ||||||||||||||||||||||||||| |||||  ||||     
T  34939869 tctagtgacataaacatttgtgaaactgttttggagagcttacggaaacagcttatgacatgtccataaattgttttcagcttatttccataaactctcc 34939770  T
Q  329 atgatagctta 339  Q
    | |||||||||    
T  34939769 aggatagctta 34939759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 202 - 339
Target Start/End: Original strand, 281766 - 281903
Alignment:
Q  202 ctgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattg 301  Q
    ||||||||| ||||||| ||||  || | || |||||| |  |||||||| |||||||||||||||| ||  || ||  ||||||| |||| |||| |||    
T  281766 ctgtttggattgacttacttgagattatgtagtgacataagtacttgtgagactgtttgggagagctaatggaagcaacttatgacatgtctataagttg 281865  T
Q  302 ttttcagcttattttcataagttctctatgatagctta 339  Q
    |||||||||||||| ||| || |||||| |||||||||    
T  281866 ttttcagcttatttccatgagctctctaggatagctta 281903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 312
Target Start/End: Original strand, 2732189 - 2732275
Alignment:
Q  226 ttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagctta 312  Q
    |||||||||||||| |  |||||||| ||||||||| | |||| ||  |||||| | ||||  ||||||||||||||||||||||||    
T  2732189 ttgtctactgacataagcacttgtgagactgtttggaaaagcttatggaaacagctaatgatctgtccataaattgttttcagctta 2732275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 202 - 327
Target Start/End: Original strand, 7785662 - 7785787
Alignment:
Q  202 ctgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattg 301  Q
    ||||||||| || ||||||||||||| ||||||||||| |  |||| ||  |||| |||   ||| | | | |||||| ||||||| |||| |||| |||    
T  7785662 ctgtttggattgtcttatttgaatttatctactgacataagcacttttgggactgattgaaggagtttacagaaacagcttatgacatgtctataagttg 7785761  T
Q  302 ttttcagcttattttcataagttctc 327  Q
    |||||||||||||| |||||| ||||    
T  7785762 ttttcagcttatttccataagctctc 7785787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 377 - 450
Target Start/End: Complemental strand, 9027527 - 9027454
Alignment:
Q  377 gcttatacataagcacatatatgataagtgatcatgcaataagtgcttaactaagctgtttacccaaacagggc 450  Q
    ||||||| |||||||| ||||| ||||||| |||||| ||||| |||||  ||| ||||||| |||||||||||    
T  9027527 gcttatagataagcacttatataataagtgttcatgctataagcgcttacttaaactgtttatccaaacagggc 9027454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 281 - 322
Target Start/End: Complemental strand, 9027651 - 9027610
Alignment:
Q  281 ttatgacgtgtccataaattgttttcagcttattttcataag 322  Q
    ||||||| ||||||||| ||||||||||||||||||||||||    
T  9027651 ttatgacatgtccataagttgttttcagcttattttcataag 9027610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 207 - 348
Target Start/End: Complemental strand, 33067305 - 33067164
Alignment:
Q  207 tggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttc 306  Q
    |||| |||| ||| ||||||| ||||||||||| |  |||||| | |||| ||||||||||| ||   ||||||||| ||  ||||||||||| ||||||    
T  33067305 tggattgacctatgtgaatttatctactgacataagcacttgtaagactgattgggagagcttatggcaacagtttaggaaatgtccataaatcgttttc 33067206  T
Q  307 agcttattttcataagttctctatgatagcttacgcaaacaa 348  Q
    || ||||||  | ||| |||| | ||||||||| | ||||||    
T  33067205 agtttatttctacaagctctccaagatagcttatgaaaacaa 33067164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 339
Target Start/End: Original strand, 835265 - 835304
Alignment:
Q  300 tgttttcagcttattttcataagttctctatgatagctta 339  Q
    |||||||||||||||||||||||||||| | |||||||||    
T  835265 tgttttcagcttattttcataagttctccaagatagctta 835304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 340
Target Start/End: Original strand, 160970 - 161008
Alignment:
Q  302 ttttcagcttattttcataagttctctatgatagcttac 340  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  160970 ttttcagcttattttcataagttctctaatatagcttac 161008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 322
Target Start/End: Original strand, 2023350 - 2023424
Alignment:
Q  248 gtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataag 322  Q
    |||| ||||||||| |||||| ||| || ||| |||| || |||| |||| ||||||||| ||||||||||||||    
T  2023350 gtgagactgtttggaagagctcatagaaccagcttataacttgtctataagttgttttcaacttattttcataag 2023424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 327
Target Start/End: Complemental strand, 3528876 - 3528830
Alignment:
Q  281 ttatgacgtgtccataaattgttttcagcttattttcataagttctc 327  Q
    ||||||| ||||||||| ||||||||| |||||||||||||| ||||    
T  3528876 ttatgacatgtccataacttgttttcatcttattttcataagctctc 3528830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 339
Target Start/End: Complemental strand, 6647460 - 6647402
Alignment:
Q  281 ttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 339  Q
    ||||||| ||| |||||  |||||||| |||||||||||||| |||||| |||||||||    
T  6647460 ttatgacatgttcataagatgttttcaacttattttcataagctctctaagatagctta 6647402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 322
Target Start/End: Original strand, 29296291 - 29296333
Alignment:
Q  280 tttatgacgtgtccataaattgttttcagcttattttcataag 322  Q
    |||||||| ||||||||| || |||||||||||||||||||||    
T  29296291 tttatgacatgtccataagttattttcagcttattttcataag 29296333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 313
Target Start/End: Original strand, 3775088 - 3775157
Alignment:
Q  244 acttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttat 313  Q
    |||||||| ||| || || |||||| ||| |||||| ||||||| ||| |||||| ||||||||||||||    
T  3775088 acttgtgagactattcggaagagcttatagaaacagcttatgacatgtgcataaactgttttcagcttat 3775157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 346
Target Start/End: Original strand, 24836207 - 24836264
Alignment:
Q  289 tgtccataaattgttttcagcttattttcataagttctctatgatagcttacgcaaac 346  Q
    |||| ||| ||||||| |||||||||| |||||| |||| ||||||||||||| ||||    
T  24836207 tgtctatatattgtttccagcttatttccataagctctccatgatagcttacgaaaac 24836264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 297
Target Start/End: Complemental strand, 27857496 - 27857415
Alignment:
Q  216 ttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataa 297  Q
    |||||||| ||| |||||||||||  | |||||||| |||||||||||||||| ||  |||||  ||||||| | |||||||    
T  27857496 ttatttgagtttatctactgacatagacacttgtgaaactgtttgggagagcttatgaaaacaacttatgacatctccataa 27857415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 322
Target Start/End: Complemental strand, 27894111 - 27894078
Alignment:
Q  289 tgtccataaattgttttcagcttattttcataag 322  Q
    |||||||||| |||||||||||||||||||||||    
T  27894111 tgtccataaactgttttcagcttattttcataag 27894078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 327
Target Start/End: Original strand, 27909636 - 27909681
Alignment:
Q  282 tatgacgtgtccataaattgttttcagcttattttcataagttctc 327  Q
    |||||| ||||||||| ||||||||||||||||| |||||| ||||    
T  27909636 tatgacatgtccataagttgttttcagcttatttccataagctctc 27909681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 341
Target Start/End: Original strand, 31624957 - 31624998
Alignment:
Q  300 tgttttcagcttattttcataagttctctatgatagcttacg 341  Q
    |||||||||||||||||||||||||||| |  ||||||||||    
T  31624957 tgttttcagcttattttcataagttctccaatatagcttacg 31624998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 339
Target Start/End: Complemental strand, 4420734 - 4420658
Alignment:
Q  263 agagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 339  Q
    |||||| ||| |||||  ||||||| ||| |||||  |||||||||||||||| |||||| |||| | |||||||||    
T  4420734 agagcttatagaaacaaattatgacatgttcataagctgttttcagcttatttccataagctctccaagatagctta 4420658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 352
Target Start/End: Original strand, 8364992 - 8365044
Alignment:
Q  300 tgttttcagcttattttcataagttctctatgatagcttacgcaaacaattta 352  Q
    |||||||||||||||||||| ||||| | ||||||||||| | ||||| ||||    
T  8364992 tgttttcagcttattttcatcagttcaccatgatagcttatgaaaacagttta 8365044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 338
Target Start/End: Complemental strand, 12230413 - 12230377
Alignment:
Q  302 ttttcagcttattttcataagttctctatgatagctt 338  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  12230413 ttttcagcttattttcataagctctccatgatagctt 12230377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 452
Target Start/End: Original strand, 22691657 - 22691713
Alignment:
Q  396 tatgataagtgatcatgcaataagtgcttaactaagctgtttacccaaacagggcct 452  Q
    ||||||||||| |||||| ||||| |||||| |||||||| || ||||||| |||||    
T  22691657 tatgataagtgctcatgcgataagcgcttaattaagctgtctatccaaacaaggcct 22691713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 299 - 347
Target Start/End: Original strand, 31671089 - 31671137
Alignment:
Q  299 ttgttttcagcttattttcataagttctctatgatagcttacgcaaaca 347  Q
    |||||||||||||||||||||||| | |||| ||||| ||||| |||||    
T  31671089 ttgttttcagcttattttcataagctatctaggatagtttacgaaaaca 31671137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 274 - 339
Target Start/End: Original strand, 41957441 - 41957506
Alignment:
Q  274 aaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 339  Q
    |||||| ||||||| ||||||||| ||||||||| ||||||||||||||||||| | |||||||||    
T  41957441 aaacagcttatgacatgtccataagttgttttcatcttattttcataagttctcaaggatagctta 41957506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 215 - 348
Target Start/End: Complemental strand, 40534338 - 40534205
Alignment:
Q  215 cttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttatt 314  Q
    ||||||||| ||| | ||||||||| || |||||||||||||||| |||||||| ||  ||  || ||||||| ||| ||||| | ||||||| |||| |    
T  40534338 cttatttgagtttatttactgacataaacacttgtgatactgtttaggagagcttatggaagtagcttatgacatgttcataattagttttcatcttact 40534239  T
Q  315 ttcataagttctctatgatagcttacgcaaacaa 348  Q
    | |||||| |||||  ||||||||| | ||||||    
T  40534238 tccataagctctctgggatagcttatgaaaacaa 40534205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 322
Target Start/End: Complemental strand, 41831004 - 41830884
Alignment:
Q  202 ctgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattg 301  Q
    ||||||||| |||||||||||| ||||| ||||| ||| || |  ||||| ||||||||||||| ||   | |||||  ||||||||||| ||||  |||    
T  41831004 ctgtttggattgacttatttgagtttgtgtactgtcataaacatctgtgagactgtttgggagaacttgcaaaaacaacttatgacgtgttcatatgttg 41830905  T
Q  302 ttttcagcttattttcataag 322  Q
    ||||| | |||||||||||||    
T  41830904 ttttccgtttattttcataag 41830884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 289 - 352
Target Start/End: Original strand, 7319013 - 7319076
Alignment:
Q  289 tgtccataaattgttttcagcttattttcataagttctctatgatagcttacgcaaacaattta 352  Q
    ||||||||| ||||| ||||||||||||||||||||||| | ||||||||| | ||||| ||||    
T  7319013 tgtccataagttgttctcagcttattttcataagttctccaagatagcttatgaaaacagttta 7319076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 244 - 339
Target Start/End: Original strand, 38104817 - 38104912
Alignment:
Q  244 acttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 339  Q
    |||||||| ||||||||||||| || | | ||||||  |||||| ||   |||| ||||||||||||||||| |||||| |||||| |||||||||    
T  38104817 acttgtgacactgtttgggagaacttacaaaaacaggctatgacttgcttataagttgttttcagcttatttccataagctctctaagatagctta 38104912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 451
Target Start/End: Complemental strand, 26516248 - 26516174
Alignment:
Q  377 gcttatacataagcacatatatgataagtgatcatgcaataagtgcttaactaagctgtttacccaaacagggcc 451  Q
    |||||||||||||||| ||||||||||| | | |||| ||||| |||||| |||| |||||| |||||| |||||    
T  26516248 gcttatacataagcacttatatgataagcgcttatgctataagcgcttaattaagttgtttatccaaactgggcc 26516174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 282 - 352
Target Start/End: Complemental strand, 34975436 - 34975366
Alignment:
Q  282 tatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagcttacgcaaacaattta 352  Q
    |||||| | ||||||||| ||||||||||||||| ||| || |||| | ||||||||||| ||||||||||    
T  34975436 tatgacatatccataaatcgttttcagcttatttccattagctctccaggatagcttacgaaaacaattta 34975366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 218 - 319
Target Start/End: Original strand, 1019400 - 1019501
Alignment:
Q  218 atttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttc 317  Q
    |||||| ||| | ||||||||| || |  ||||||||||||| |||||||| ||| ||| || ||||| | || |||||| ||||||||| |||||||||    
T  1019400 atttgagtttatatactgacataaacatgtgtgatactgtttaggagagcttataaaaatagcttatgccatggccataagttgttttcatcttattttc 1019499  T
Q  318 at 319  Q
    ||    
T  1019500 at 1019501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 327
Target Start/End: Original strand, 19138712 - 19138760
Alignment:
Q  279 gtttatgacgtgtccataaattgttttcagcttattttcataagttctc 327  Q
    ||||||||| ||| ||||||||||||||||||||||| |||||| ||||    
T  19138712 gtttatgacatgtacataaattgttttcagcttatttccataagctctc 19138760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 202 - 322
Target Start/End: Complemental strand, 31208624 - 31208504
Alignment:
Q  202 ctgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattg 301  Q
    ||||||||| ||||||||||||| |   |||||||||| |  ||  |||| |||||||||||||| | ||| |||||  |||||   ||||| |||| ||    
T  31208624 ctgtttggattgacttatttgaactgaactactgacataagcacccgtgagactgtttgggagagttcataaaaacaacttatgtaatgtccgtaaactg 31208525  T
Q  302 ttttcagcttattttcataag 322  Q
    |||| ||||||||||||||||    
T  31208524 tttttagcttattttcataag 31208504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 339
Target Start/End: Original strand, 4014440 - 4014479
Alignment:
Q  300 tgttttcagcttattttcataagttctctatgatagctta 339  Q
    |||||||||||||||||||||||||||| | |||||||||    
T  4014440 tgttttcagcttattttcataagttctccaagatagctta 4014479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 352
Target Start/End: Complemental strand, 7319471 - 7319408
Alignment:
Q  289 tgtccataaattgttttcagcttattttcataagttctctatgatagcttacgcaaacaattta 352  Q
    |||| |||| ||| |||||||||||||| |||||||||| | ||||||||||| ||||| ||||    
T  7319471 tgtctataagttgctttcagcttatttttataagttctccaagatagcttacgaaaacagttta 7319408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 324
Target Start/End: Complemental strand, 8334632 - 8334601
Alignment:
Q  293 cataaattgttttcagcttattttcataagtt 324  Q
    ||||||||||||||||||||||||||||||||    
T  8334632 cataaattgttttcagcttattttcataagtt 8334601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 327
Target Start/End: Original strand, 14182385 - 14182424
Alignment:
Q  288 gtgtccataaattgttttcagcttattttcataagttctc 327  Q
    |||| ||||||||||||||| |||||||||||||||||||    
T  14182385 gtgttcataaattgttttcaacttattttcataagttctc 14182424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 337
Target Start/End: Original strand, 28586728 - 28586819
Alignment:
Q  246 ttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagct 337  Q
    |||||| |||||||||||||||| ||  ||| || ||||||| | ||| |||  ||||||||||||||||  ||||| |||||| |||||||    
T  28586728 ttgtgaaactgtttgggagagcttatggaaatagcttatgacatatccgtaagctgttttcagcttatttcgataagctctctaggatagct 28586819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 339
Target Start/End: Complemental strand, 4619808 - 4619722
Alignment:
Q  253 actgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 339  Q
    |||||||||||||||| ||  |||||  | ||||| ||| |||||  || ||||| ||||||| ||||||||||| |||||||||||    
T  4619808 actgtttgggagagcttatgaaaacaactaatgacatgttcataagctggtttcaccttatttccataagttctccatgatagctta 4619722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 339
Target Start/End: Complemental strand, 7985078 - 7984984
Alignment:
Q  246 ttgtgatactgtttgggagagctgatataaacagtttatgacgt-gtccataaattgttttcagcttattttcataagttctctatgatagctta 339  Q
    |||||| ||| |||||||||||| |   |||||| || |||||| || |||||  |||||||||||||||||||||| ||||| | |||||||||    
T  7985078 ttgtgagactatttgggagagcttaagaaaacagcttgtgacgttgttcataagctgttttcagcttattttcataaattctccaagatagctta 7984984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 336
Target Start/End: Original strand, 8177522 - 8177584
Alignment:
Q  274 aaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagc 336  Q
    |||||| ||||||  ||||||||| |||||||||| ||||||||||||| |||| | ||||||    
T  8177522 aaacagcttatgatatgtccataagttgttttcaggttattttcataagctctccaggatagc 8177584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 347
Target Start/End: Original strand, 10280603 - 10280661
Alignment:
Q  289 tgtccataaattgttttcagcttattttcataagttctctatgatagcttacgcaaaca 347  Q
    ||||||||| ||||| ||||||||||| ||||||||||||  |||| |||| |||||||    
T  10280603 tgtccataagttgttatcagcttatttccataagttctctgagataacttaagcaaaca 10280661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 327
Target Start/End: Complemental strand, 34160792 - 34160758
Alignment:
Q  293 cataaattgttttcagcttattttcataagttctc 327  Q
    |||||| ||||||||||||||||||||||||||||    
T  34160792 cataaactgttttcagcttattttcataagttctc 34160758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 339
Target Start/End: Complemental strand, 36639595 - 36639537
Alignment:
Q  281 ttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 339  Q
    ||||||||||||||||| ||||||||  |||||||||||||| |||  | |||||||||    
T  36639595 ttatgacgtgtccataagttgttttcctcttattttcataagctcttcaagatagctta 36639537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 348
Target Start/End: Original strand, 40205060 - 40205138
Alignment:
Q  270 atataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagcttacgcaaacaa 348  Q
    |||||||||| |||| || |||||||||  ||||||||||||||||  ||||| |||| | ||||||||| | ||||||    
T  40205060 atataaacagcttataacatgtccataatctgttttcagcttatttctataagctctccaggatagcttatgaaaacaa 40205138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 339
Target Start/End: Complemental strand, 42582561 - 42582511
Alignment:
Q  289 tgtccataaattgttttcagcttattttcataagttctctatgatagctta 339  Q
    |||||||||||| |||||| ||||||| ||||||||||||| |||| ||||    
T  42582561 tgtccataaattattttcaacttatttccataagttctctaagataactta 42582511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 327
Target Start/End: Complemental strand, 1899234 - 1899181
Alignment:
Q  274 aaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctc 327  Q
    |||||| ||||||| ||| ||||| ||||||||||||||||| ||||| |||||    
T  1899234 aaacagcttatgacatgtgcataagttgttttcagcttatttccataaattctc 1899181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 321
Target Start/End: Original strand, 10272391 - 10272468
Alignment:
Q  244 acttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataa 321  Q
    |||||||  ||| |||||||| ||| ||| |||||  ||||||| ||||  ||| |||||||||||||||||||||||    
T  10272391 acttgtgtgactatttgggagtgcttatagaaacaacttatgacatgtctgtaagttgttttcagcttattttcataa 10272468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 338
Target Start/End: Complemental strand, 12425636 - 12425587
Alignment:
Q  289 tgtccataaattgttttcagcttattttcataagttctctatgatagctt 338  Q
    |||| |||| ||||||||| ||||||||||||||||||| | ||||||||    
T  12425636 tgtcaataagttgttttcaacttattttcataagttctccaagatagctt 12425587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 339
Target Start/End: Original strand, 13605363 - 13605428
Alignment:
Q  274 aaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 339  Q
    |||||| ||||||  ||| |||||||||||||||| ||||||||||||| | || | |||||||||    
T  13605363 aaacagcttatgaaatgtacataaattgttttcagtttattttcataagctttccaggatagctta 13605428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 327
Target Start/End: Complemental strand, 14331447 - 14331394
Alignment:
Q  274 aaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctc 327  Q
    |||||| ||||||| |||||||||  || |||||||||||||||||||| ||||    
T  14331447 aaacagcttatgacatgtccataagctgatttcagcttattttcataagctctc 14331394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 340
Target Start/End: Complemental strand, 43300929 - 43300892
Alignment:
Q  303 tttcagcttattttcataagttctctatgatagcttac 340  Q
    ||||||||||||||||||||||||| | ||||||||||    
T  43300929 tttcagcttattttcataagttctccaagatagcttac 43300892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 322
Target Start/End: Original strand, 13604839 - 13604887
Alignment:
Q  274 aaacagtttatgacgtgtccataaattgttttcagcttattttcataag 322  Q
    |||||| ||||||| ||||||||  ||||||||| ||||||||||||||    
T  13604839 aaacagcttatgacatgtccatacgttgttttcaacttattttcataag 13604887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 322
Target Start/End: Complemental strand, 31694598 - 31694550
Alignment:
Q  274 aaacagtttatgacgtgtccataaattgttttcagcttattttcataag 322  Q
    |||||| |||| || ||||||||| ||||||||| ||||||||||||||    
T  31694598 aaacagcttatcacttgtccataagttgttttcaacttattttcataag 31694550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 299 - 339
Target Start/End: Original strand, 32059374 - 32059414
Alignment:
Q  299 ttgttttcagcttattttcataagttctctatgatagctta 339  Q
    |||||||||||||||||  |||||||||||| |||||||||    
T  32059374 ttgttttcagcttatttcgataagttctctaggatagctta 32059414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 282 - 322
Target Start/End: Complemental strand, 35963313 - 35963273
Alignment:
Q  282 tatgacgtgtccataaattgttttcagcttattttcataag 322  Q
    |||||| ||||||||| ||||||||||||||||| ||||||    
T  35963313 tatgacatgtccataagttgttttcagcttatttccataag 35963273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 202 - 348
Target Start/End: Complemental strand, 11264453 - 11264307
Alignment:
Q  202 ctgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattg 301  Q
    ||||||||| || ||||||||| | | ||||||  ||| || |  ||||| |||||||||||||||  ||| || ||  ||||||| |||||||||| ||    
T  11264453 ctgtttggattggcttatttgagtctatctactagcataaacatctgtgagactgtttgggagagcatatagaatcaacttatgacatgtccataaactg 11264354  T
Q  302 ttttcagcttattttcataagttctctatgatagcttacgcaaacaa 348  Q
    |||||| ||||||| |||||| |||||| ||| ||||| | ||||||    
T  11264353 ttttcaacttatttccataagctctctaggatggcttatgaaaacaa 11264307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 274 - 339
Target Start/End: Original strand, 28614798 - 28614863
Alignment:
Q  274 aaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 339  Q
    ||||| |||||||| | |||||||  | |||||||||||||||||||||||||||| |||||||||    
T  28614798 aaacaatttatgacatatccataagctcttttcagcttattttcataagttctctaggatagctta 28614863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 205 - 322
Target Start/End: Complemental strand, 25896933 - 25896812
Alignment:
Q  205 tttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaat----t 300  Q
    |||||| | |||||||||| ||| ||||||  |||||  |||||||| ||||||| |||||||| ||| ||| || ||||||| |||||||| ||    |    
T  25896933 tttggattcacttatttgagtttatctactagcattagcacttgtgagactgtttaggagagcttatagaaatagcttatgacatgtccatacataaact 25896834  T
Q  301 gttttcagcttattttcataag 322  Q
    ||||||||||||||||| ||||    
T  25896833 gttttcagcttattttcctaag 25896812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 247 - 315
Target Start/End: Complemental strand, 52754706 - 52754638
Alignment:
Q  247 tgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattt 315  Q
    ||||| ||||||||| |||||| ||  ||||||||||||||||||||||||  || |||||||||||||    
T  52754706 tgtgaaactgtttggaagagcttatgaaaacagtttatgacgtgtccataagctgctttcagcttattt 52754638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 377 - 444
Target Start/End: Complemental strand, 46053650 - 46053583
Alignment:
Q  377 gcttatacataagcacatatatgataagtgatcatgcaataagtgcttaactaagctgtttacccaaa 444  Q
    ||||||||||||| || ||||||||||||  |||||| ||||| |||||| ||||||||||| |||||    
T  46053650 gcttatacataagtacttatatgataagtactcatgctataagcgcttaattaagctgtttatccaaa 46053583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 244 - 339
Target Start/End: Original strand, 50799990 - 50800084
Alignment:
Q  244 acttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 339  Q
    |||||||| | ||||||||||| || || ||||||  ||||||| |||| ||||  |||||||||||||||| || |||||||| |||||||||||    
T  50799990 acttgtgagattgtttgggagaactaatgtaaacaacttatgacatgtctataagctgttttcagcttatttcca-aagttctccatgatagctta 50800084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 202 - 287
Target Start/End: Original strand, 7367972 - 7368057
Alignment:
Q  202 ctgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgac 287  Q
    ||||||||| |||||||||||| ||| ||||| | ||| ||  ||||||| |||||||||||||||| ||  |||||| |||||||    
T  7367972 ctgtttggattgacttatttgagtttatctacaggcataaacgcttgtgagactgtttgggagagctcatgaaaacagcttatgac 7368057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 339
Target Start/End: Complemental strand, 44320057 - 44319964
Alignment:
Q  246 ttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctta 339  Q
    |||||| |||||||||||||||| ||  |||||  |||||| || ||||| |  | |||||| || |||||||||||||||||| |||||||||    
T  44320057 ttgtgagactgtttgggagagcttatgaaaacaaattatgatgtatccattagctattttcaactaattttcataagttctctaggatagctta 44319964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 203 - 355
Target Start/End: Original strand, 21043155 - 21043306
Alignment:
Q  203 tgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgt 302  Q
    |||||||| |||||||||||| |||  |||| | ||| ||| ||||||| |||||||||||||| | ||  |||||| |||||||  || |||||  |||    
T  21043155 tgtttggattgacttatttgagtttacctacaggcatgaaa-cttgtgagactgtttgggagaggttatggaaacagcttatgacacgttcataagctgt 21043253  T
Q  303 tttcagcttattttcataagttctctatgatagcttacgcaaacaatttaact 355  Q
    ||||||  |||||||||| | |||  | ||||||||| | ||||| |||||||    
T  21043254 tttcagtgtattttcatatgctcttcaggatagcttatgaaaacagtttaact 21043306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 300 - 336
Target Start/End: Original strand, 29601024 - 29601060
Alignment:
Q  300 tgttttcagcttattttcataagttctctatgatagc 336  Q
    |||||||||||||||||||||||||||||| ||||||    
T  29601024 tgttttcagcttattttcataagttctctaggatagc 29601060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 47970359 - 47970315
Alignment:
Q  291 tccataaattgttttcagcttattttcataagttctctatgatag 335  Q
    ||||||||||||||||||||||||| |||||| |||| |||||||    
T  47970359 tccataaattgttttcagcttatttgcataagctctccatgatag 47970315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 329
Target Start/End: Complemental strand, 24929573 - 24929518
Alignment:
Q  274 aaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctcta 329  Q
    |||||| ||||| | ||| ||||||||||||||||||||||| |||||| ||||||    
T  24929573 aaacagcttatggcatgttcataaattgttttcagcttatttccataagctctcta 24929518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 327
Target Start/End: Original strand, 33534097 - 33534212
Alignment:
Q  212 tgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagctt 311  Q
    ||||||||||||  || |||| |||||| |  |||||||| | | |||| ||||||| ||  |||||  || |||| | ||||||| |||||||||||||    
T  33534097 tgacttatttgagcttatctagtgacataagtacttgtgagagtatttgagagagcttatgaaaacaaattgtgacatatccataagttgttttcagctt 33534196  T
Q  312 attttcataagttctc 327  Q
    ||||||||||| ||||    
T  33534197 attttcataagctctc 33534212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 438
Target Start/End: Original strand, 39063768 - 39063827
Alignment:
Q  379 ttatacataagcacatatatgataagtgatcatgcaataagtgcttaactaagctgttta 438  Q
    |||||||||||||| ||||||||||||| | |||| ||||| |||||| || ||||||||    
T  39063768 ttatacataagcacttatatgataagtggttatgccataagcgcttaagtatgctgttta 39063827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 352
Target Start/End: Original strand, 53673663 - 53673726
Alignment:
Q  289 tgtccataaattgttttcagcttattttcataagttctctatgatagcttacgcaaacaattta 352  Q
    ||||||||| ||||||||||||||||| |||||| |||| | ||||||||| | ||||| ||||    
T  53673663 tgtccataagttgttttcagcttatttacataagctctccaagatagcttatgaaaacagttta 53673726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 336
Target Start/End: Original strand, 6987703 - 6987793
Alignment:
Q  246 ttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagc 336  Q
    |||||| |||||||||||||||| ||  | |||  ||||||| |||||||||| | |||||| ||||||| |||||| |||| | ||||||    
T  6987703 ttgtgagactgtttgggagagcttatggatacaacttatgacatgtccataaactattttcaacttatttccataagctctccaggatagc 6987793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 322
Target Start/End: Complemental strand, 42461361 - 42461283
Alignment:
Q  244 acttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataag 322  Q
    |||| ||| ||||||||||||| || ||  ||| ||  |||||||||| ||||| ||| ||||||||||||||||||||    
T  42461361 acttatgagactgtttgggagaacttatgaaaatagcctatgacgtgttcataagttgatttcagcttattttcataag 42461283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 339
Target Start/End: Original strand, 46415709 - 46415847
Alignment:
Q  202 ctgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgttt-gggagagctgatataaacagtttatgacgtgtccataaatt 300  Q
    ||||||||| |||||||||||| ||  || ||||||||   ||||| ||| ||||||| ||||||| | ||  |||||   |||||| ||||||||| ||    
T  46415709 ctgtttggattgacttatttgagttcatccactgacataggaacttatgagactgttttgggagagtttatgcaaacaacctatgacatgtccataagtt 46415808  T
Q  301 gttttcagcttattttcataagttctctatgatagctta 339  Q
    |||||||||| |||||  |||| |||| | |||||||||    
T  46415809 gttttcagctaattttactaagctctcgaggatagctta 46415847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 446
Target Start/End: Original strand, 51555970 - 51556056
Alignment:
Q  360 cttttattaaaataatggcttatacataagcacatatatgataagtgatcatgcaataagtgcttaactaagctgtttacccaaaca 446  Q
    ||||| ||| |||||| |||||||||||||||| |||||||||| || | |||  |||||||||| | |||| |||||  |||||||    
T  51555970 cttttgttataataatagcttatacataagcacttatatgataaatggttatgttataagtgctttattaagttgtttggccaaaca 51556056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 325
Target Start/End: Complemental strand, 53155359 - 53155289
Alignment:
Q  255 tgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttc 325  Q
    |||||| ||||||| ||  |||||  ||||||| |||| |||||||| |||||||||||||||| ||||||    
T  53155359 tgtttgtgagagcttatgcaaacaacttatgacatgtctataaattgctttcagcttattttcacaagttc 53155289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 312
Target Start/End: Original strand, 54277241 - 54277351
Alignment:
Q  202 ctgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattg 301  Q
    |||||| || ||||||||||||| || |||| |||||| || |||| ||| |||||| | ||||||| | | |||||| |||| || ||| ||||| ||     
T  54277241 ctgtttagattgacttatttgaacttatctagtgacataaacacttatgagactgttagcgagagcttacagaaacagcttatcacatgttcataagtta 54277340  T
Q  302 ttttcagctta 312  Q
    |||||||||||    
T  54277341 ttttcagctta 54277351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 404
Target Start/End: Complemental strand, 54414914 - 54414872
Alignment:
Q  362 tttattaaaataatggcttatacataagcacatatatgataag 404  Q
    ||||| |||||||| |||||||||||||||| |||||||||||    
T  54414914 tttataaaaataatagcttatacataagcacttatatgataag 54414872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 339
Target Start/End: Original strand, 2977995 - 2978032
Alignment:
Q  302 ttttcagcttattttcataagttctctatgatagctta 339  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  2977995 ttttcagcttattttcataagttttctaggatagctta 2978032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 348
Target Start/End: Complemental strand, 2996712 - 2996579
Alignment:
Q  215 cttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttatt 314  Q
    |||||||||| || | || |||||| |  |||| ||| |||||||| ||||||| ||  |||||  ||||||| |||||||||  | |||||| ||||||    
T  2996712 cttatttgaacttatttattgacataagcacttttgagactgtttgagagagcttatgaaaacaacttatgacatgtccataagcttttttcaacttatt 2996613  T
Q  315 ttcataagttctctatgatagcttacgcaaacaa 348  Q
    |||||| | |||| | ||||||||| | ||||||    
T  2996612 ttcatacgctctccaagatagcttatgaaaacaa 2996579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 321
Target Start/End: Original strand, 3176064 - 3176141
Alignment:
Q  244 acttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataa 321  Q
    |||||||| ||||||| |||||||| ||  |||||  ||||| | |||| |||| ||||||||||||||||| |||||    
T  3176064 acttgtgaaactgtttaggagagcttatgaaaacatcttatgtcatgtctataagttgttttcagcttatttccataa 3176141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 338
Target Start/End: Original strand, 5131255 - 5131304
Alignment:
Q  289 tgtccataaattgttttcagcttattttcataagttctctatgatagctt 338  Q
    ||||||||| ||||||||||||||||| |||||| |||| | ||||||||    
T  5131255 tgtccataagttgttttcagcttatttccataagctctccaggatagctt 5131304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 445
Target Start/End: Original strand, 8422940 - 8423025
Alignment:
Q  360 cttttattaaaataatggcttatacataagcacatatatgataagtgatcatgcaataagtgcttaactaagctgtttacccaaac 445  Q
    ||||| ||| || ||| ||||||||||||||||||||||||||  |||| |||| ||||   ||||| |||| |||||| ||||||    
T  8422940 ctttttttataaaaatagcttatacataagcacatatatgatacatgattatgctataaacacttaattaagttgtttatccaaac 8423025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 329
Target Start/End: Original strand, 8469373 - 8469422
Alignment:
Q  280 tttatgacgtgtccataaattgttttcagcttattttcataagttctcta 329  Q
    |||||||| ||| ||||| ||||||||||||||||| |||| ||||||||    
T  8469373 tttatgacatgttcataagttgttttcagcttatttccataggttctcta 8469422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 338
Target Start/End: Original strand, 13126537 - 13126630
Alignment:
Q  246 ttgtgatactgtttgggagagctgatataaacagtttatgacgtgtc-cataaattgttttcagcttattttcataagttctctatgatagctt 338  Q
    |||||| ||||||||| ||| || ||| |||||| ||||||| | |  |||||  | |||||||||||||||||||||||||| | ||||||||    
T  13126537 ttgtgagactgtttggaagaacttataaaaacagcttatgacatttatcataagcttttttcagcttattttcataagttctcgaagatagctt 13126630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 326
Target Start/End: Complemental strand, 25332836 - 25332803
Alignment:
Q  293 cataaattgttttcagcttattttcataagttct 326  Q
    ||||| ||||||||||||||||||||||||||||    
T  25332836 cataagttgttttcagcttattttcataagttct 25332803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 322
Target Start/End: Complemental strand, 30024779 - 30024738
Alignment:
Q  281 ttatgacgtgtccataaattgttttcagcttattttcataag 322  Q
    ||||||| |||||||| | |||||||||||||||||||||||    
T  30024779 ttatgacatgtccatatactgttttcagcttattttcataag 30024738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 265
Target Start/End: Original strand, 36577462 - 36577523
Alignment:
Q  204 gtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggaga 265  Q
    ||||||| ||||||||||||||||||||| ||| || |  |||||||| ||||||| |||||    
T  36577462 gtttggattgacttatttgaatttgtctattgagataagcacttgtgagactgtttcggaga 36577523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 289 - 329
Target Start/End: Complemental strand, 8469013 - 8468973
Alignment:
Q  289 tgtccataaattgttttcagcttattttcataagttctcta 329  Q
    ||||||||| |||||||||| ||||||||||||| ||||||    
T  8469013 tgtccataagttgttttcagattattttcataagctctcta 8468973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 292 - 348
Target Start/End: Original strand, 11158365 - 11158421
Alignment:
Q  292 ccataaattgttttcagcttattttcataagttctctatgatagcttacgcaaacaa 348  Q
    ||||||| |||||||||||||||| || ||| |||||| ||||||||| | ||||||    
T  11158365 ccataaactgttttcagcttatttccacaagctctctaagatagcttatgaaaacaa 11158421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 203 - 339
Target Start/End: Complemental strand, 14011385 - 14011249
Alignment:
Q  203 tgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgt 302  Q
    |||||||| | |||| |||||| || |||||| |||| |  || ||| | ||| |||||||||||| ||  ||| ||||||| || ||||  |||  |||    
T  14011385 tgtttggatttacttctttgaacttatctacttacataagcacatgtaaaactatttgggagagcttatgcaaagagtttatcacatgtctttaagctgt 14011286  T
Q  303 tttcagcttattttcataagttctctatgatagctta 339  Q
    ||||||||||||| |||||| |||| | |||||||||    
T  14011285 tttcagcttatttccataagctctccaagatagctta 14011249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 268
Target Start/End: Original strand, 18628481 - 18628537
Alignment:
Q  212 tgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagct 268  Q
    |||| |||||||  || ||||||||||| || |||||||| ||||||||||||||||    
T  18628481 tgacgtatttgagcttatctactgacataaacacttgtgagactgtttgggagagct 18628537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 299 - 327
Target Start/End: Complemental strand, 21879659 - 21879631
Alignment:
Q  299 ttgttttcagcttattttcataagttctc 327  Q
    |||||||||||||||||||||||||||||    
T  21879659 ttgttttcagcttattttcataagttctc 21879631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 299 - 339
Target Start/End: Complemental strand, 22662065 - 22662025
Alignment:
Q  299 ttgttttcagcttattttcataagttctctatgatagctta 339  Q
    |||||||| ||||||| |||||||||||| |||||||||||    
T  22662065 ttgttttctgcttattgtcataagttctccatgatagctta 22662025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 299 - 339
Target Start/End: Complemental strand, 22666544 - 22666504
Alignment:
Q  299 ttgttttcagcttattttcataagttctctatgatagctta 339  Q
    |||||||| ||||||| |||||||||||| |||||||||||    
T  22666544 ttgttttctgcttattgtcataagttctccatgatagctta 22666504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 446
Target Start/End: Complemental strand, 24193534 - 24193466
Alignment:
Q  378 cttatacataagcacatatatgataagtgatcatgcaataagtgcttaactaagctgtttacccaaaca 446  Q
    |||||||||||| || ||||||||||| | | |||| ||||||||| || |||| |||||| |||||||    
T  24193534 cttatacataagtacttatatgataagcgtttatgctataagtgctcaattaagttgtttatccaaaca 24193466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 322
Target Start/End: Original strand, 32831746 - 32831793
Alignment:
Q  274 aaacagtttatgacgtgtccataaattgttttcagcttattttcataag 322  Q
    |||||| |||| |||||||||||||| |||| |||||||||||||||||    
T  32831746 aaacaggttatcacgtgtccataaatcgttt-cagcttattttcataag 32831793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 281 - 338
Target Start/End: Complemental strand, 27074 - 27017
Alignment:
Q  281 ttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctt 338  Q
    ||||||| ||| |||||| |||||||||||||||| |||||| |||||||||||||||    
T  27074 ttatgacatgtgcataaactgttttcagcttatttccataagctctctatgatagctt 27017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 202 - 339
Target Start/End: Original strand, 159891 - 160028
Alignment:
Q  202 ctgtttggaatgacttatttgaatttgtctactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattg 301  Q
    ||||||||| || |||||||||  || |||||| | || || |||||||| ||| ||| ||||| || ||  |||||||||||||| |||| ||||   |    
T  159891 ctgtttggattggcttatttgagcttatctactaatataaacacttgtgaaactattttggagaactaatggaaacagtttatgacatgtctataagcag 159990  T
Q  302 ttttcagcttattttcataagttctctatgatagctta 339  Q
    |||||||||||||| || ||| ||| || |||||||||    
T  159991 ttttcagcttatttccacaagctctttaggatagctta 160028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 321
Target Start/End: Original strand, 10564 - 10654
Alignment:
Q  231 tactgacattaaaacttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataa 321  Q
    ||||||||| |  |||||||| ||||||||  | |||| || ||||||  | ||||| ||||||||| ||||||||||||||||| |||||    
T  10564 tactgacataagtacttgtgagactgtttgacaaagcttatgtaaacaactaatgacatgtccataagttgttttcagcttatttccataa 10654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 348
Target Start/End: Complemental strand, 306406 - 306332
Alignment:
Q  274 aaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagcttacgcaaacaa 348  Q
    |||||| ||||||| || ||||||  ||||||||||||| || |||||| |||||| ||||||||| | ||||||    
T  306406 aaacagcttatgacatgcccataagctgttttcagcttacttacataagctctctaggatagcttatgaaaacaa 306332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 338
Target Start/End: Original strand, 12701 - 12758
Alignment:
Q  281 ttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagctt 338  Q
    ||||||| ||||||||| ||||||||||||||  | |||||| |||||| ||||||||    
T  12701 ttatgacatgtccataagttgttttcagcttagctccataagctctctaagatagctt 12758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1983 times since January 2019
Visitors: 1435