View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0134_1D_low_9 (Length: 351)
Name: NF0134_1D_low_9
Description: NF0134_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0134_1D_low_9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 24 - 351
Target Start/End: Original strand, 19642760 - 19643087
Alignment:
| Q |
24 |
gaaagttccattccctttaggcaaaccatcttcccaatagccatcatacctattcccattactccaaacaaatgaccctttaccccaaatactcccattc |
123 |
Q |
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| T |
19642760 |
gaaagttccattccctttaggcaaaccatcttcccaatagccatcatacctattcccattactccaaacaaatgaccctttaccccaaatactcccattc |
19642859 |
T |
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| Q |
124 |
ctccattccccaatataatatttctcatctttccactcatatctcccttgtccatcctgcaaacctcttctccattctccctcatacttatctccattcg |
223 |
Q |
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| T |
19642860 |
ctccattccccaatataatatttctcatctttccactcatatctcccttgtccatcctgcaaacctcttctccattctccctcatacttatctccattcg |
19642959 |
T |
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| Q |
224 |
aataactcgtctcaccatgaccatgtttcaaattcattacccattgtcccttataagtatccccattagtagaagtgtatgcacctattccatccatata |
323 |
Q |
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| T |
19642960 |
aataactcgtctcaccatgaccatgtttcaaattcatcacccattgtcctttataagtatccccattagtagaagtgtatgcacctattccatccatata |
19643059 |
T |
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| Q |
324 |
accactcttgagctccccttcataagct |
351 |
Q |
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| T |
19643060 |
accactcttgaactccccttcataagct |
19643087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 25 - 291
Target Start/End: Complemental strand, 35256975 - 35256709
Alignment:
| Q |
25 |
aaagttccattccctttaggcaaaccatcttcccaatagccatcatacctattcccattactccaaacaaatgaccctttaccccaaatactcccattcc |
124 |
Q |
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| T |
35256975 |
aaagttccatttccttttggcaaaccatcttcccaaatcccttcaaagctattaccattaggccaaaaaaatgatcctttaccccaaattatcccattct |
35256876 |
T |
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| Q |
125 |
tccattccccaatataatatttctcatctttccactcatatctcccttgtccatcctgcaaacctcttctccattctccctcatacttatctccattcga |
224 |
Q |
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||||||| |||||||||| || |||| |||| ||||| ||||||| |||||| |||| ||||| ||||| || || |||||| ||| |||||| |
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| T |
35256875 |
tccattcaccaatataatgactcatatctctccattcatacctcccttttccatcttgcacccctctcctccaatcaccttcataccaatcaccattcac |
35256776 |
T |
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| Q |
225 |
ataactcgtctcaccatgaccatgtttcaaattcattacccattgtcccttataagtatccccatta |
291 |
Q |
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| T |
35256775 |
ataactcttatacccatgaccatgttttaaattcatcacccattgtcctttatatgtctcaccatta |
35256709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 14520864 - 14520916
Alignment:
| Q |
31 |
ccattccctttaggcaaaccatcttcccaatagccatcatacctattcccatt |
83 |
Q |
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| T |
14520864 |
ccattccctttaggaaaaccttcttcccaacaaccatcatatctattcccatt |
14520916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 4193288 - 4193236
Alignment:
| Q |
31 |
ccattccctttaggcaaaccatcttcccaatagccatcatacctattcccatt |
83 |
Q |
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| T |
4193288 |
ccattccctttcggaaaaccattttcccaacaaccatcatacctattcccatt |
4193236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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