View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0134_2D_high_10 (Length: 333)
Name: NF0134_2D_high_10
Description: NF0134_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0134_2D_high_10 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 51403582 - 51403914
Alignment:
| Q |
1 |
tttcactttgggttatgctctgtggtactgcttttattctctttgcagtttttgctataagaccgttgcttgcatacatggctaagcgttcccctgaggg |
100 |
Q |
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| T |
51403582 |
tttcactttgggttatgctctgtggtactgcttttattctctttgcagtttttgctataagaccgttgcttgcatacatggctaagcgttcccctgaggg |
51403681 |
T |
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| Q |
101 |
tgaacctgttaaagagctttacatttgtatcacattgacattggttttggcttgtagttttgttactgatactattggaattcatgcattatttggtgct |
200 |
Q |
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| T |
51403682 |
tgaacctgttaaagagctttacatttgtatcacattgacattggttttggcttgtagttttgttactgatactattggaattcatgcattatttggtgct |
51403781 |
T |
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| Q |
201 |
tttgttattggtataattatgcctaaagatggtccttttgctggtgttttaattgagaagattgaagatcttgtgtctggaatctttttgccactctatt |
300 |
Q |
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| T |
51403782 |
tttgttattggtataattatgcctaaagatggtccttttgctggtgttttaattgagaagattgaagatcttgtgtctggaatctttttgccactctatt |
51403881 |
T |
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| Q |
301 |
ttgcttctagtggtttgaagacaaatgtggcta |
333 |
Q |
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| T |
51403882 |
ttgcttctagtggtttgaagacaaatgtggcta |
51403914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 78 - 274
Target Start/End: Complemental strand, 29983168 - 29982972
Alignment:
| Q |
78 |
atggctaagcgttcccctgagggtgaacctgttaaagagctttacatttgtatcacattgacattggttttggcttgtagttttgttactgatactattg |
177 |
Q |
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| T |
29983168 |
atggctaaacgttgccctgagggtgaacctgtgaaggagatttacatttgcatcacattgacactagttttgggttgtagttttttaactgatactattg |
29983069 |
T |
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| Q |
178 |
gaattcatgcattatttggtgcttttgttattggtataattatgcctaaagatggtccttttgctggtgttttaattgagaagattgaagatcttgt |
274 |
Q |
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| T |
29983068 |
gtattcatgctctctttggagcttttgtagctggcattgttgttcctaaggaaggtccttttgctagtattttgactgagaagattgaggatcttgt |
29982972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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