View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0134_2D_high_14 (Length: 301)
Name: NF0134_2D_high_14
Description: NF0134_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0134_2D_high_14 |
 | |
|
| [»] scaffold0003 (2 HSPs) |
| | |
|
| [»] scaffold0131 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0003 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 111626 - 111772
Alignment:
| Q |
1 |
gttttgaaattttgagtgaaatgttaaaatgggattttactacctttttgagtgaaatgttgaaatttgatgacc-agtaaccctgttttgttgttcttg |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
111626 |
gttttgaaattttgagtgaaatgttaaaatgggattttactacttttttgagtgaa-tgttgaaatttgatgacccagtaaccctgttttgttgttcttg |
111724 |
T |
|
| Q |
100 |
aagtaataatttatcttttatctatgctgattgtgaagtttaggattt |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
111725 |
aagtaataatttatcttttatctatgctgattgtgaagtttaggattt |
111772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 134 - 241
Target Start/End: Original strand, 111791 - 111898
Alignment:
| Q |
134 |
gaagtttaggatttagtttcctatgtataattttgtagtaattttaaaaatcttactgtgaaaatgaatttcagcggagtaactgatttgtatttttctt |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
111791 |
gaagtttaggatttagtttcctatgtataattttgtagtaattttaaaaatcttactgtgaaaatgaatttcagcagagtaactaatttgtatttttctt |
111890 |
T |
|
| Q |
234 |
gttataga |
241 |
Q |
| |
|
|||||||| |
|
|
| T |
111891 |
gttataga |
111898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 134810 - 134957
Alignment:
| Q |
1 |
gttttgaaattttgagtgaaatgttaaaatgggattttactacctttttgagtgaaatgttgaaatttgatgacc-agtaaccctgttttgttgttcttg |
99 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
134810 |
gttttgaaattttgagtgaaatattaaaatgagattttactacttttttgagtgaaatgttgaaatttgatgacccagtaaccctgttttgttgttcttg |
134909 |
T |
|
| Q |
100 |
aagtaataatttatcttttatctatgctgattgtgaagtttaggattt |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
134910 |
aagtaataatttatcttttatctatgctgattgtgaagtttaggattt |
134957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 134 - 241
Target Start/End: Original strand, 134976 - 135083
Alignment:
| Q |
134 |
gaagtttaggatttagtttcctatgtataattttgtagtaattttaaaaatcttactgtgaaaatgaatttcagcggagtaactgatttgtatttttctt |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
134976 |
gaagtttaggatttagtttcctatgtataattttgtagtaattttaaaaatcttactgtgaaaatgaatttcagcagagtaactggtttgtatttttctt |
135075 |
T |
|
| Q |
234 |
gttataga |
241 |
Q |
| |
|
|||||||| |
|
|
| T |
135076 |
gttataga |
135083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0131 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0131
Description:
Target: scaffold0131; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 124 - 174
Target Start/End: Original strand, 12156 - 12206
Alignment:
| Q |
124 |
tgctgattgtgaagtttaggatttagtttcctatgtataattttgtagtaa |
174 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
12156 |
tgctgattgtgaagtttacgatttagtttcctatgtataatattgtagtaa |
12206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0131; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 67
Target Start/End: Original strand, 11622 - 11656
Alignment:
| Q |
33 |
gattttactacctttttgagtgaaatgttgaaatt |
67 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |
|
|
| T |
11622 |
gattttactacttttttgagtgaaatgttgaaatt |
11656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 9884707 - 9884658
Alignment:
| Q |
192 |
tgaaaatgaatttcagcggagtaactgatttgtatttttcttgttataga |
241 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
9884707 |
tgaaaatgaatttcagcagagtaactgatttgaatttttcttgttataga |
9884658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 20421209 - 20421258
Alignment:
| Q |
192 |
tgaaaatgaatttcagcggagtaactgatttgtatttttcttgttataga |
241 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
20421209 |
tgaaaatgaatttcagcagagtaactgatttgaatttttcttgttataga |
20421258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 118
Target Start/End: Original strand, 5362994 - 5363053
Alignment:
| Q |
61 |
tgaaatttgatgacc-agtaaccctgttttgttgttcttgaagtaataatt-tatctttt |
118 |
Q |
| |
|
||||||||||||||| ||||||| | |||||||||||||||||||| |||| |||||||| |
|
|
| T |
5362994 |
tgaaatttgatgacccagtaaccttattttgttgttcttgaagtaaaaattctatctttt |
5363053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2052 times since January 2019
Visitors: 1439