View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0134_2D_high_22 (Length: 256)
Name: NF0134_2D_high_22
Description: NF0134_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0134_2D_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 14417550 - 14417619
Alignment:
| Q |
1 |
aggcatggaggcatatattaaaaggaggtgcatgtaacactttct-aaaaaatgtcacataaaaaatgtt |
69 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||| |
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| T |
14417550 |
aggcatggaggcatatattaaaaggaggtgcatgtaacactttttaaaaaaatgtcacataaaagatgtt |
14417619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 14417400 - 14417350
Alignment:
| Q |
175 |
gccctgtgtctagtgtatgagtggatgcaataataaactttatgatttgag |
225 |
Q |
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| T |
14417400 |
gccctgtgtctagtgtatgagtggatgcaataataaactttgtgatttgag |
14417350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 96
Target Start/End: Complemental strand, 14417517 - 14417479
Alignment:
| Q |
58 |
ataaaaaatgttacatgcacttcattcgttttctctcgc |
96 |
Q |
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| T |
14417517 |
ataaaaaatgttacatgcacttcattcgttttctctcgc |
14417479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 25035874 - 25035937
Alignment:
| Q |
6 |
tggaggcatatattaaaaggaggtgcatgtaacactttctaaaaaatgtcacataaaaaatgtt |
69 |
Q |
| |
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|||| ||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
25035874 |
tggaagcacatattaaaaggaggtgcatgtaacactttctaaaaaatgtcacatataagatgtt |
25035937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 17711015 - 17711074
Alignment:
| Q |
1 |
aggcatggaggcatatattaaaaggaggtgcatgtaacactttctaaaaaatgtcacata |
60 |
Q |
| |
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||||||||| ||| ||||||||||||||||||| |||||||||||| ||||||||||||| |
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|
| T |
17711015 |
aggcatggaagcacatattaaaaggaggtgcatctaacactttctacaaaatgtcacata |
17711074 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 24511427 - 24511495
Alignment:
| Q |
1 |
aggcatggaggcatatattaaaaggaggtgcatgtaacactttctaaaaaatgtcacataaaaaatgtt |
69 |
Q |
| |
|
|||| |||| |||| || |||||||||||| |||||||||||| |||||||||||||||| || ||||| |
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| T |
24511427 |
aggcgtggaagcatgtaataaaaggaggtgtatgtaacactttttaaaaaatgtcacatataatatgtt |
24511495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 25035702 - 25035656
Alignment:
| Q |
181 |
tgtctagtgtatgagtggatgcaataataaactttatgatttgagga |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||| || | ||||||||||| |
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|
| T |
25035702 |
tgtctagtgtatgagtggatgcaataataagctctgtgatttgagga |
25035656 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 96
Target Start/End: Complemental strand, 25035822 - 25035785
Alignment:
| Q |
59 |
taaaaaatgttacatgcacttcattcgttttctctcgc |
96 |
Q |
| |
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|||||||||||||| |||||||||||||||| |||||| |
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|
| T |
25035822 |
taaaaaatgttacacgcacttcattcgttttatctcgc |
25035785 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 44512595 - 44512647
Alignment:
| Q |
175 |
gccctgtgtctagtgtatgagtggatgcaataataaactttatgatttgagga |
227 |
Q |
| |
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|||||||||| ||||||||||||| ||||||||||| | ||||||||||||| |
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| T |
44512595 |
gccctgtgtcaagtgtatgagtgggtgcaataataagttctatgatttgagga |
44512647 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 43531964 - 43532005
Alignment:
| Q |
2 |
ggcatggaggcatatattaaaaggaggtgcatgtaacacttt |
43 |
Q |
| |
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|||||||| ||| |||||||||||||||| |||||||||||| |
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| T |
43531964 |
ggcatggaagcacatattaaaaggaggtggatgtaacacttt |
43532005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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