View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0134_2D_high_23 (Length: 231)
Name: NF0134_2D_high_23
Description: NF0134_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0134_2D_high_23 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 33817337 - 33817140
Alignment:
| Q |
1 |
tctaggtaaggttcgaaactcaaacattctgaatctaatggctcagactccccaacaacgagtctttctggtgagataccaaataggagatcatcactag |
100 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33817337 |
tctaggtaaggttcgaaactcgaacatcctgaatctaatggctcagactccccaacaacgagtctttctggtgagataccaaataggagaccatcactag |
33817238 |
T |
|
| Q |
101 |
cctagaaatcatgtcacaagacgtcgacatgccattaccaataaaagtgggttctcatttagtgtattaaaacttggatccatctatagtatacatat |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33817237 |
cctagaaatcatgtcacaagacgtcgacatgccattaccaataaaagtgggttctcattcagtgtattaaaacttggatccatctatagtatacatat |
33817140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1897 times since January 2019
Visitors: 1433