View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0134_2D_high_24 (Length: 228)
Name: NF0134_2D_high_24
Description: NF0134_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0134_2D_high_24 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 228
Target Start/End: Complemental strand, 238663 - 238454
Alignment:
| Q |
19 |
agagagaggagagaaactatattcttccaaactcaaaccttaaaacacgtgcatgcagttattattgatgctgatggtgaggagggtccttcacaatccc |
118 |
Q |
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| T |
238663 |
agagagaggagagaaactatattcttccaaactcaaaccctaaaacacgtgcatgcagttattattgatgctgatggtgaggagggtccttcacaatccc |
238564 |
T |
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| Q |
119 |
actctatatatacacacttcctaagagtaagtaattaaaaattacttagaaaggatcttcacaataaattatttattgcagactggctcccatgagaaaa |
218 |
Q |
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| T |
238563 |
actctatatatacacacttcctaagagtaagtaattaaaaattacttagaaaggatcttcacaataaattatttattgcaaactggctcccatgagaaaa |
238464 |
T |
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| Q |
219 |
tgtacgtacg |
228 |
Q |
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|||| ||||| |
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| T |
238463 |
tgtaagtacg |
238454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 22677432 - 22677376
Alignment:
| Q |
81 |
tattgatgctgatggtgaggagggtccttcacaatcccactctatatatacacactt |
137 |
Q |
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| T |
22677432 |
tattgatggtgatggtgaggagggtccttcacaatcccactctatatatacacactt |
22677376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 22677465 - 22677433
Alignment:
| Q |
20 |
gagagaggagagaaactatattcttccaaactc |
52 |
Q |
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| T |
22677465 |
gagagaggagagaaattatattcttccaaactc |
22677433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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