View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0134_2D_high_28 (Length: 220)

Name: NF0134_2D_high_28
Description: NF0134_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0134_2D_high_28
NF0134_2D_high_28
[»] chr7 (5 HSPs)
chr7 (1-210)||(45283016-45283225)
chr7 (1-210)||(45294404-45294613)
chr7 (1-210)||(45303364-45303573)
chr7 (1-210)||(45274775-45274984)
chr7 (8-210)||(45271249-45271451)


Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 45283016 - 45283225
Alignment:
Q  1 gcgatcggaagcagagatccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacgtcaag 100  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  45283016 gcgatcagaagaagagatccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacttcaag 45283115  T
Q  101 ttgaattgctggaggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttctgtacgctgtccaaactctgaacatggaattgctcct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  45283116 ttgaattgctggaggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacatggaattgctcct 45283215  T
Q  201 tgatcttctt 210  Q
    ||||||||||    
T  45283216 tgatcttctt 45283225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 45294404 - 45294613
Alignment:
Q  1 gcgatcggaagcagagatccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacgtcaag 100  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  45294404 gcgatcagaagcagagatccatgaagggtatccttgatcatcaacagtcacctcagaattaagaagacgacgggaagcaggtttgatatcaaacttcaag 45294503  T
Q  101 ttgaattgctggaggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttctgtacgctgtccaaactctgaacatggaattgctcct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |  ||||||||||    
T  45294504 ttgaattgctggaggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacgtctaattgctcct 45294603  T
Q  201 tgatcttctt 210  Q
    ||||||||||    
T  45294604 tgatcttctt 45294613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 45303364 - 45303573
Alignment:
Q  1 gcgatcggaagcagagatccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacgtcaag 100  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  45303364 gcgatcagaagcagagatccatgaagggtatccttgatcatcaacagtcacctcagaattaagaagacgacgggaagcaggtttgatatcaaacttcaag 45303463  T
Q  101 ttgaattgctggaggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttctgtacgctgtccaaactctgaacatggaattgctcct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |  ||||||||||    
T  45303464 ttgaattgctggaggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacgtctaattgctcct 45303563  T
Q  201 tgatcttctt 210  Q
    ||||||||||    
T  45303564 tgatcttctt 45303573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 45274775 - 45274984
Alignment:
Q  1 gcgatcggaagcagagatccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacgtcaag 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||| |||||    
T  45274775 gcgatcagaagcagagatccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaaagaggtttgatatcaaacttcaag 45274874  T
Q  101 ttgaattgctggaggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttctgtacgctgtccaaactctgaacatggaattgctcct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||| ||||||||||||||||||||||||||||||||||| |    
T  45274875 ttgaattgctggaggatgtcggacaaaccagtcacaatgtcaagggcaaccgcggtgatcttttgtacgctgtccaaactctgaacatggaattgctctt 45274974  T
Q  201 tgatcttctt 210  Q
    |||| |||||    
T  45274975 tgattttctt 45274984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 8 - 210
Target Start/End: Original strand, 45271249 - 45271451
Alignment:
Q  8 gaagcagagatccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacgtcaagttgaatt 107  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||  ||||||||||||    
T  45271249 gaagaagagatccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaaggaggtttgatatcaaagttcaagttgaatt 45271348  T
Q  108 gctggaggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttctgtacgctgtccaaactctgaacatggaattgctccttgatctt 207  Q
    ||||||||||||| ||||||||||||||||||||||||||||| || || ||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  45271349 gctggaggatgtcagacaaaccagtcacaatgtcaagggcaacggctgtgaccttttgtacgctgtacaaactctgaacatggaattgctccttgatctt 45271448  T
Q  208 ctt 210  Q
    |||    
T  45271449 ctt 45271451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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