View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0134_2D_low_1 (Length: 1356)
Name: NF0134_2D_low_1
Description: NF0134_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0134_2D_low_1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 866; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 866; E-Value: 0
Query Start/End: Original strand, 318 - 1339
Target Start/End: Complemental strand, 39895236 - 39894210
Alignment:
| Q |
318 |
tgatgtgaactaatttaaatggatggaaggtaatattattgagaatatatatgttgggaaagtgtgaaactaaaatagaagagtatgggccatgacccca |
417 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39895236 |
tgatgtgaactaatttaaatggatggaaggtaatattattgagaatatatatgttgggaaagtgtgaaactaaaatagaagagtatgggccatgacccca |
39895137 |
T |
|
| Q |
418 |
caagctcaagatgtatgagtcagaagaatgtgaatgtacgtttttgtgttgtgtagtgtagtgcaatttactttgtgggttatggatttatacagcacaa |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
39895136 |
caagctcaagatgtatgagtcagaagaatgtgaatgtacgtttttgtgttgtgtagtgtagtgcaatttactctgtgggttatggatttatacagcacaa |
39895037 |
T |
|
| Q |
518 |
taacatgctcctagattttaatgannnnnnnncctctttgggatattttatgagatatatacgtggaattttcatatttagagagttaaattgtaatata |
617 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39895036 |
taacatgctcctagattttaatgattttttttcctctttgggatattttatgaaatatatacgtggaattttcatatttagagagttacattgtaatata |
39894937 |
T |
|
| Q |
618 |
aaacatatttttcaattatatacttaaaacaaagaaagatcttacaaattttaaaaatattttaaatcaaaatctataatcttctaaatatatttagata |
717 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39894936 |
aaacatatttttcaattatatacttaaaacaaagaaagatcttacaaattttaaaaatattttaaatcaaaatctataatcttctaaatatatttagata |
39894837 |
T |
|
| Q |
718 |
tattattctcaacatttaattatatattgcaataaatttaaccggtttttactttatatatgaatccacttacaatgataaggtattttaatagtttgag |
817 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
39894836 |
tattattctcaacatttaattatatattgcaataaatttaaccggtttttactttatatatgaatccacttacaatgataaggtattttgatagtttgag |
39894737 |
T |
|
| Q |
818 |
gggaaaaatgcaagagttaaagtgatgagaagaatatgaattaaggtaaatatattatggaaattgcttctttgcacgacacaattacatgcacgagaac |
917 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
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|
| T |
39894736 |
gggaaaaatgcaagagttaaagtgatgagaagaatatgaa-taaggtaaatatattatggaaaatgcttctttgcacgacacaattacatgcacaagaac |
39894638 |
T |
|
| Q |
918 |
gcactacacacgcataacctttggatgaatgatgttcaacacaactttaattctctctcctcccatgtatt-gtatgccatccgtcgattcgaatctcgt |
1016 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
39894637 |
gcacgacacacgcataacctttggatgaatgatgttcaacacaactttaattctctctcctcccatgtattacaatgccatccgtcgattcgaatctcgt |
39894538 |
T |
|
| Q |
1017 |
gcgttgtcgtgggtgattgagtcgtgctaaatagcactgcacatatattatatatcataatacgttcattgatattgnnnnnnncccttttaattgttgt |
1116 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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|
| T |
39894537 |
gcgttgtcatgggtgattgagtcgtgctaaatagcactgctcatatattatatatcataatacgttcattgatattgtttttttcccctttaattgttgt |
39894438 |
T |
|
| Q |
1117 |
aagaagaagtgaattac----tttttctctctcttataaataaaaatcagcaaggttgtacatgatcacaaacatttgtttgtgaatttcacaaacctcg |
1212 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39894437 |
aagaaggagtgaattactttttttttctctctcttataaataaaaatcagcaaggttgtacatgatcacaaacatttgtttgtgaatttcacaaacctcg |
39894338 |
T |
|
| Q |
1213 |
tgtttgtgtacgcactttttgttgttggtaaaaacaaggaataactttacttatgtttttgatgaaaatcagacgagtcaaatctatgactaaac-aaaa |
1311 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||| ||||| |||| |
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| T |
39894337 |
tgtttgtgtgcgcactttttgttgttggtgaaaacaaggaatagctttatttatgtttttgatgaaaatcagacgagtcaaatctttgattaaacaaaaa |
39894238 |
T |
|
| Q |
1312 |
ataataatttgtgatttattcatgatgt |
1339 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
39894237 |
ataataatttgtgatttattcatgatgt |
39894210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 25 - 242
Target Start/End: Complemental strand, 39895529 - 39895312
Alignment:
| Q |
25 |
ttgtgaactagcaacttttttggaggaagaagatgaagaagaacggtgattatgatggtggcgccgaccttgttttgcagccaatagaagaagcctttca |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
39895529 |
ttgtgaactagcaacttttttggaggaagaagatgaagaagaacggtggttatgatggtggcgccgaccttgttttgctgccaatagaagaagcctttca |
39895430 |
T |
|
| Q |
125 |
ttcaagcataaaggacatacaccaacaactacttgtttagggtggaaattgcaacatggtttttcatccctatatccattcctattcatgtttgttaata |
224 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39895429 |
ttcaagcataaagggcatacaccaacaactacttgtttagggtggaaattgcaacatggtttttcatccctatatccattcctattcatgtttgttaata |
39895330 |
T |
|
| Q |
225 |
aaggtttttggtacacta |
242 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
39895329 |
aaggtttttggtacacta |
39895312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 118; Significance: 1e-59; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 876 - 1056
Target Start/End: Original strand, 26715208 - 26715388
Alignment:
| Q |
876 |
ggaaattgcttctttgcacgacacaattacatgcacgagaacgcactacacacgcataacctttggatgaatgatgttcaacacaactttaattctctct |
975 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||| || ||| ||||||||||||| |
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|
| T |
26715208 |
ggaaattgcttcttcacacgacacaattacatgcacgagaacgcacgacacacgcataacccttggat-aatgatgtgcagcactgttttaattctctct |
26715306 |
T |
|
| Q |
976 |
cctcccatgtattgtatgccatccgtcgattcgaatctcgtgcgttgtcgtgggtga-ttgagtcgtgctaaatagcactgc |
1056 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||| |
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|
| T |
26715307 |
cctcccatgtattgtatgccattcgtcgattcgaatctcgtgtgttgtcgtgggtcatttgagtcgtgctaaatagcactgc |
26715388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000009
Query Start/End: Original strand, 876 - 1062
Target Start/End: Original strand, 3450060 - 3450245
Alignment:
| Q |
876 |
ggaaattgcttctttgcacgacacaattacatgcacgagaacgcactacacacgcataacctttggatgaatgatgttcaacacaactttaattctctct |
975 |
Q |
| |
|
||||||||||| || ||||||||| | |||| ||||| ||||||| |||| |||||| |||||||||| |||| || || |||| ||||||||| |
|
|
| T |
3450060 |
ggaaattgcttgttggcacgacaccaatacaaacacgaaaacgcacgacactaatataacccttggatgaataatgtgcagcattgcttttattctctct |
3450159 |
T |
|
| Q |
976 |
cctcccatgtattgtatgccatccgtcgattcgaatctcgtgcgttgtcgtgggtgattgagtcgtgctaaatagcactgcacatat |
1062 |
Q |
| |
|
|| |||||||| ||||||| |||||| ||||| || ||||| |||||| | || ||||| |||||||||||||||| || ||||| |
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|
| T |
3450160 |
cc-cccatgtagtgtatgctatccgttgattccaacgtcgtgtgttgtcatcagtcattgaatcgtgctaaatagcacagctcatat |
3450245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 931 - 1045
Target Start/End: Complemental strand, 40891789 - 40891675
Alignment:
| Q |
931 |
ataacctttggatgaatgatgttcaacacaactttaattctctctcctcccatgtattgtatgccatccgtcgattcgaatctcgtgcgttgtcgtgggt |
1030 |
Q |
| |
|
|||||| ||||||||| |||| ||||| |||| |||||||| || |||||||||||||||| |||||| |||| || |||| |||||||||||| |
|
|
| T |
40891789 |
ataacccttggatgaagaatgtgcaacattgcttttattctctccccccccatgtattgtatgctatccgttgatttcaacgtcgtttgttgtcgtgggt |
40891690 |
T |
|
| Q |
1031 |
gattgagtcgtgcta |
1045 |
Q |
| |
|
||||| || ||||| |
|
|
| T |
40891689 |
tattgaatcctgcta |
40891675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 110; Significance: 9e-55; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 9e-55
Query Start/End: Original strand, 876 - 1064
Target Start/End: Complemental strand, 9522394 - 9522206
Alignment:
| Q |
876 |
ggaaattgcttctttgcacgacacaattacatgcacgagaacgcactacacacgcataacctttggatgaatgatgttcaacacaactttaattctctct |
975 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||| | |||||| | |||||| || ||| |||||||||||||| |
|
|
| T |
9522394 |
ggaaattgcttcttcacacgacacaattacatgcacgagaacgcacgacacgcgcataaaccttggatta-tgatgtgcagcactgctttaattctctct |
9522296 |
T |
|
| Q |
976 |
cctcccatgtattgtatgccatccgtcgattcgaatctcgtgcgttgtcgtgggtga-ttgagtcgtgctaaatagcactgcacatatat |
1064 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||| |||||||||||| | |||||||||||||||||||||||| ||||||| |
|
|
| T |
9522295 |
cctcccatgtattgtatgccatccgacgatttgaatctcgtgtgttgtcgtgggtcatttgagtcgtgctaaatagcactgctcatatat |
9522206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 982 - 1056
Target Start/End: Original strand, 10505591 - 10505665
Alignment:
| Q |
982 |
atgtattgtatgccatccgtcgattcgaatctcgtgcgttgtcgtgggtgattgagtcgtgctaaatagcactgc |
1056 |
Q |
| |
|
||||||||||||| |||| | ||||| || | ||| |||||||| ||| |||||||||||| |||||||||||| |
|
|
| T |
10505591 |
atgtattgtatgctatccattgattccaacatggtgtgttgtcgttggtcattgagtcgtgccaaatagcactgc |
10505665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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