View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0134_2D_low_12 (Length: 452)
Name: NF0134_2D_low_12
Description: NF0134_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0134_2D_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 252 - 441
Target Start/End: Original strand, 9073068 - 9073257
Alignment:
| Q |
252 |
cttggtggttagggttgcagcaagtcttgcacttagagattctgtgaaacatgaagctactcgttgcatggagtcacctagtggtgttactactctattg |
351 |
Q |
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| T |
9073068 |
cttggtggttagggttgcagcaagtcttgcacttagagattctgtgaaacatgaagctactcgttgcatggagtcacctagtggtgttactactctattg |
9073167 |
T |
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| Q |
352 |
agctggtgtaggtaccttcttgctagcatgtattcaccttttgccactgcttcagcacatgctagaagcaagtgcactagttgatgtcca |
441 |
Q |
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| T |
9073168 |
agctggtgtaggtaccttcttgctagcatgtattcaccttttgccactgcttcagcacatgctagaagcaagtgcactaattgaagtcca |
9073257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 17 - 193
Target Start/End: Original strand, 9072833 - 9073009
Alignment:
| Q |
17 |
attggtagccttgaaggatatcaaggtcgatgacatggacacgctcttccgcctcaaacgcctcgaaaatggcttggttagcggtaaagtgtgcgaattt |
116 |
Q |
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| T |
9072833 |
attggtagccttgaaggatatcaaggtcgatgacatggacacgctcttcagcctcaaacgcctcgaaaatggcttggttagcggtaaagtgtgcgaattt |
9072932 |
T |
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| Q |
117 |
gatgtaagggcaagcttggtagacaatttggtatatcttgaggacttccatagggtttgatgggaaggtagataaac |
193 |
Q |
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| T |
9072933 |
gatgtaagggcaagcttggtagacaatttggtatatcttgaggacttccatagggtttgatgggaaggtagataaac |
9073009 |
T |
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