View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0134_2D_low_17 (Length: 366)
Name: NF0134_2D_low_17
Description: NF0134_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0134_2D_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 28129801 - 28130151
Alignment:
| Q |
1 |
tgtttctcttgtccatgaaagtaagcttgaatttggagatccatacaggaaacatcaaatgatatgtaggtaggttcttctggctactgtacattacatt |
100 |
Q |
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| T |
28129801 |
tgtttctcttgtccatgaaagtaagcttgattttggagatccatacaggaaacatcaaatgatatgtaggtaggttcttctggctactgtacattacatt |
28129900 |
T |
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| Q |
101 |
ttctggaactga-tttcggcattttgtcagcagaaagatgcttatgatcaaacttttgtacaggtatcaccagaaggcaccgccaaattggacagcactt |
199 |
Q |
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| T |
28129901 |
ttctggaactgactttcggcattttgtcagcagaaagatgcttatgatcaaacttttgtacaggtatcaccagaaggcaccgccaaattggacagcactt |
28130000 |
T |
|
| Q |
200 |
tctattgcaatcctattctttgtgatttttctattaatcggttacattttatatggtgctgggaattatattgtcaaagtagaggatgatttccacgaaa |
299 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28130001 |
tctactgcaatcctattctttgtgattcttctattaatcggttacattttatatggtgctgggaattatattgtcaaagtagaggatgatttccacgaaa |
28130100 |
T |
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| Q |
300 |
tgcaggagctaaaagttcgagcagaggcagacgatgttgctaagtcacagg |
350 |
Q |
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| T |
28130101 |
tgcaggagctaaaagttcgagcagaggcagccgatgttgctaagtcacagg |
28130151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 44821804 - 44821454
Alignment:
| Q |
1 |
tgtttctcttgtccatgaaagtaagcttgaatttggagatccatacaggaaacatcaaatgatatgtaggtaggttcttctggctactgtacattacatt |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44821804 |
tgtttctcttgtccatgaaagtaagcttgattttggagatccatacaggaaacatcaaatgatatgtaggtaggttcttctggctactgtacattacatt |
44821705 |
T |
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| Q |
101 |
ttctggaactga-tttcggcattttgtcagcagaaagatgcttatgatcaaacttttgtacaggtatcaccagaaggcaccgccaaattggacagcactt |
199 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44821704 |
ttctggaactgactttcggcattttgtcagcagaaagatgcttatgatcaaacttttgtacaggtatcaccagaaggcaccgccaaattggacagcactt |
44821605 |
T |
|
| Q |
200 |
tctattgcaatcctattctttgtgatttttctattaatcggttacattttatatggtgctgggaattatattgtcaaagtagaggatgatttccacgaaa |
299 |
Q |
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|||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
44821604 |
tctactgcaatcctattctttgtgattcttcttttaatcggttacattttatatggtgctgggaatcatattgtcaaagtagaggatgatttccacgaaa |
44821505 |
T |
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| Q |
300 |
tgcaggagctaaaagttcgagcagaggcagacgatgttgctaagtcacagg |
350 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
44821504 |
tgcaggagctaaaagttcgagcagaggcagccgatgttgccaagtcacagg |
44821454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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